MOFA2
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MOFA2.
Multi-Omics Factor Analysis v2
Bioconductor version: 3.12
The MOFA2 package contains a collection of tools for running and analysing MOFA models.
Author: Ricard Argelaguet [aut] 
, Damien Arnol [aut] , Danila Bredikhin [aut] , Britta Velten [aut, cre]
Maintainer: Britta Velten <britta.velten at gmail.com>
Citation (from within R, enter
citation("MOFA2")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MOFA2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOFA2")| Downstream analysis: Overview | HTML | R Script |
| MOFA2: How to train a model in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Bayesian, DimensionReduction, Software, Visualization |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0) |
| Imports | rhdf5, dplyr, tidyr, reshape2, pheatmap, ggplot2, methods, GGally, RColorBrewer, cowplot, ggrepel, reticulate, HDF5Array, grDevices, stats, magrittr, forcats, utils, corrplot, DelayedArray, Rtsne, uwot, basilisk |
| System Requirements | Python (>=3), numpy, pandas, h5py, scipy, argparse, sklearn, mofapy2 |
| URL | https://biofam.github.io/MOFA2/index.html |
| Bug Reports | https://github.com/bioFAM/MOFA2 |
See More
| Suggests | knitr, testthat, Seurat, ggpubr, foreach, psych, MultiAssayExperiment, SummarizedExperiment, SingleCellExperiment, ggrastr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MOFA2_1.0.1.tar.gz |
| Windows Binary | MOFA2_1.0.1.zip |
| macOS 10.13 (High Sierra) | MOFA2_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MOFA2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOFA2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/MOFA2/ |
| Package Short Url | https://bioconductor.org/packages/MOFA2/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |