Package: adme16cod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Rn.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 3902516a40a503302ef732143b2394b9
NeedsCompilation: no
Title: Codelink ADME Rat 16-Assay Bioarray annotation data (chip
adme16cod)
Description: Codelink ADME Rat 16-Assay Bioarray annotation data (chip
adme16cod) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus,
adme16cod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Rattus norvegicus
manufacturer: Codelink
source.ver: src/contrib/adme16cod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ag.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3),
org.At.tair.db (>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e5913da38fe4487202306cacd885840d
NeedsCompilation: no
Title: Affymetrix Arabidopsis Genome Array annotation data (chip ag)
Description: Affymetrix Arabidopsis Genome Array annotation data (chip
ag) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Arabidopsis_thaliana, ag
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
manufacturer: Affymetrix
source.ver: src/contrib/ag.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: agcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 5dd14bc6a6d2729f5e7b170105c78e48
NeedsCompilation: no
Title: agcdf
Description: A package containing an environment representing the
AG.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ag,
Arabidopsis_thaliana
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/agcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: agprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 08f7527d4c8a30d8b2f86016a53f075a
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ag
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
AG\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ag,
Arabidopsis_thaliana
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/agprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: AHCytoBands
Version: 0.99.0
Depends: R (>= 3.2.2), methods
License: Artistic-2.0
MD5sum: 87b801fe5699cae422a661711272c0a2
NeedsCompilation: no
Title: CytoBands for AnnotationHub
Description: Supplies AnnotationHub with CytoBand information from
UCSC. There is a track for each major organism. Giemsa-stained
bands are commonly used to decorate chromosomal overviews in
visualizations of genomic data.
biocViews: DataImport
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
source.ver: src/contrib/AHCytoBands_0.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: AHEnsDbs
Version: 1.0.18
Depends: R (>= 3.4), methods, ensembldb (>= 1.99.10)
Imports: AnnotationHubData (>= 1.5.24)
Suggests: BiocStyle, knitr, AnnotationHub (>= 2.7.13)
License: Artistic-2.0
MD5sum: 7b7129ff0220db25bbdbdb114d9b94b3
NeedsCompilation: no
Title: EnsDbs for AnnotationHub
Description: Supplies AnnotationHub with EnsDb Ensembl-based annotation
databases for all species. EnsDb SQLite databases are generated
separately from Ensembl MySQL databases using functions from
the ensembldb package employing the Ensembl Perl API.
biocViews: DataImport, Sequencing, Coverage, AnnotationHubSoftware
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
VignetteBuilder: knitr
source.ver: src/contrib/AHEnsDbs_1.0.18.tar.gz
vignettes: vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.html
vignetteTitles: Provide EnsDb databases for AnnotationHub
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.R
dependencyCount: 121
Package: alternativeSplicingEvents.hg19
Version: 1.0.1
Imports: AnnotationHub
Suggests: data.frame, dplyr, GenomicRanges, S4Vectors
License: MIT + file LICENSE
MD5sum: 3e694353233e7d5d3abd22bfb5887513
NeedsCompilation: no
Title: Alternative splicing event annotation for Human (hg19)
Description: Data frame containing alternative splicing events. The
splicing events were compiled from the annotation files used by
the alternative splicing quantification tools MISO, VAST-TOOLS,
SUPPA and rMATS.
Author: Nuno Agostinho
Maintainer: Nuno Agostinho <nunodanielagostinho@gmail.com>
URL: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19
BugReports:
https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19/issues
source.ver: src/contrib/alternativeSplicingEvents.hg19_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
dependencyCount: 77
Package: alternativeSplicingEvents.hg38
Version: 1.0.1
Imports: AnnotationHub
Suggests: dplyr, GenomicRanges, S4Vectors
License: MIT + file LICENSE
MD5sum: 9ce2e10cfe00ec4451670e1fd18d2e37
NeedsCompilation: no
Title: Alternative splicing event annotation for Human (hg38)
Description: Data frame containing alternative splicing events. The
splicing events were compiled from the annotation files used by
the alternative splicing quantification tools MISO, VAST-TOOLS,
SUPPA and rMATS.
Author: Nuno Agostinho
Maintainer: Nuno Agostinho <nunodanielagostinho@gmail.com>
URL: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38
BugReports:
https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38/issues
source.ver: src/contrib/alternativeSplicingEvents.hg38_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
dependencyCount: 77
Package: anopheles.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 3ae348a1b17be4a4eeaafa957048f325
NeedsCompilation: no
Title: Base Level Annotation databases for anopheles
Description: Base annotation databases for anopheles, intended ONLY to
be used by AnnotationDbi to produce regular annotation
packages.
biocViews: db0, AnnotationData, Anopheles_gambiae
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Anopheles gambiae
source.ver: src/contrib/anopheles.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: arabidopsis.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 47c5c616a99e905075aad47f9c336933
NeedsCompilation: no
Title: Base Level Annotation databases for arabidopsis
Description: Base annotation databases for arabidopsis, intended ONLY
to be used by AnnotationDbi to produce regular annotation
packages.
biocViews: db0, AnnotationData, Arabidopsis_thaliana
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver: src/contrib/arabidopsis.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ath1121501.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3),
org.At.tair.db (>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ff9977848321463b27a379ed31fffbc3
NeedsCompilation: no
Title: Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip
ath1121501)
Description: Affymetrix Arabidopsis ATH1 Genome Array annotation data
(chip ath1121501) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Arabidopsis_thaliana, ath1121501
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
manufacturer: Affymetrix
source.ver: src/contrib/ath1121501.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ath1121501cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 8b63798143219b7c1c2666a91a1a2440
NeedsCompilation: no
Title: ath1121501cdf
Description: A package containing an environment representing the
ATH1-121501.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ath1121501,
Arabidopsis_thaliana
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ath1121501cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: XhybCasneuf
dependencyCount: 28
Package: ath1121501probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: eeeae5e6550bb472ba3419d71bbd7dfb
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ath1121501
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
ATH1-121501\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ath1121501,
Arabidopsis_thaliana
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ath1121501probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: barley1cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 16a2ca83f550518756d9fa3273672157
NeedsCompilation: no
Title: barley1cdf
Description: A package containing an environment representing the
Barley1.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, barley1,
Hordeum_vulgare
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/barley1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: barley1probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 80595d8ecf83ba83ea84a722a24ab474
NeedsCompilation: no
Title: Probe sequence data for microarrays of type barley1
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Barley1\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, barley1,
Hordeum_vulgare
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/barley1probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: bovine.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Bt.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 0006dd79279fa1bf69a275e0586f2197
NeedsCompilation: no
Title: Affymetrix bovine annotation data (chip bovine)
Description: Affymetrix bovine annotation data (chip bovine) assembled
using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Bos_taurus, bovine
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
manufacturer: Affymetrix
source.ver: src/contrib/bovine.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: bovine.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 16e4e0479901044d2b2b2fc60335f3a0
NeedsCompilation: no
Title: Base Level Annotation databases for bovine
Description: Base annotation databases for bovine, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Bos_taurus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/bovine.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: bovinecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: e155fc7d5f84ee420d9b250a639af305
NeedsCompilation: no
Title: bovinecdf
Description: A package containing an environment representing the
Bovine.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, bovine, Bos_taurus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/bovinecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: bovineprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 9f9e25fc8c7a76acf541745b7c09748b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type bovine
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Bovine\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, bovine, Bos_taurus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/bovineprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: BSgenome.Alyrata.JGI.v1
Version: 1.0.1
Depends: BSgenome (>= 1.58.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 64878499c633de66ccf4c5abc32c0aeb
NeedsCompilation: no
Title: Arabidopsis lyrata full genome (JGI version V1.0)
Description: Arabidopsis lyrata 8x Release [project ID 4002920] as
provided by JGI ( snapshot from March 24, 2011) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, Alyrata
Author: Jian-Feng Mao and Ya-Long Guo, with acknowledgement to Detlef
Weigel
Maintainer: Jian-Feng Mao <jianfeng.mao@gmail.com>
organism: Arabidopsis lyrata
source.ver: src/contrib/BSgenome.Alyrata.JGI.v1_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Amellifera.BeeBase.assembly4
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 77495ee5eba48fe52902c9cc4f9ba7cc
NeedsCompilation: no
Title: Full genome sequences for Apis mellifera (BeeBase assembly4)
Description: iFull genome sequences for Apis mellifera (Honey Bee) as
provided by BeeBase (assembly4, Feb. 2008) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Apis mellifera
source.ver:
src/contrib/BSgenome.Amellifera.BeeBase.assembly4_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Amellifera.NCBI.AmelHAv3.1
Version: 1.5.0
Depends: R (>= 4.0.0), BSgenome (>= 1.58.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: b119087dfe54805c90cb6bf901e8237e
NeedsCompilation: no
Title: Full genome sequences for Apis mellifera (Amel_HAv3.1)
Description: Full genome sequences for Apis mellifera as provided by
NCBI (assembly Amel_HAv3.1, assembly accession GCF_003254395.2)
and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Apis mellifera
source.ver:
src/contrib/BSgenome.Amellifera.NCBI.AmelHAv3.1_1.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Amellifera.UCSC.apiMel2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 436ddf54868906e7d1135369d41a2ffe
NeedsCompilation: no
Title: Full genome sequences for Apis mellifera (UCSC version apiMel2)
Description: Full genome sequences for Apis mellifera (Honey Bee) as
provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Apis mellifera
source.ver: src/contrib/BSgenome.Amellifera.UCSC.apiMel2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Amellifera.UCSC.apiMel2.masked
importsMe: BSgenome.Amellifera.UCSC.apiMel2.masked
dependencyCount: 41
Package: BSgenome.Amellifera.UCSC.apiMel2.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Amellifera.UCSC.apiMel2
Imports: BSgenome, BSgenome.Amellifera.UCSC.apiMel2
License: Artistic-2.0
MD5sum: e7a7ff8cfce8e239b22116855456f23d
NeedsCompilation: no
Title: Full masked genome sequences for Apis mellifera (UCSC version
apiMel2)
Description: Full genome sequences for Apis mellifera (Honey Bee) as
provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Amellifera.UCSC.apiMel2, except that each of them has
the 3 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), and (3) the mask of repeats from RepeatMasker (RM mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Apis mellifera
source.ver:
src/contrib/BSgenome.Amellifera.UCSC.apiMel2.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Aofficinalis.NCBI.V1
Version: 1.0.0
Depends: BSgenome (>= 1.42.0)
Imports: BSgenome
License: GPL-3
MD5sum: 3f8fd13e74eee63895a5ef528004b60b
NeedsCompilation: no
Title: Asparagus officinalis (Garden asparagus) full genome (NCBI
version Aspof.V1)
Description: Full genome sequences for Asparagus officinalis (Garden
asparagus) as provided by NCBI (Aspof.V1, Feb. 2017) and stored
in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Asparagus_officinalis
Author: Jose V. Die <jose.die@uco.es>
Maintainer: Jose V. Die <jose.die@uco.es>
organism: Asparagus officinalis
source.ver: src/contrib/BSgenome.Aofficinalis.NCBI.V1_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Athaliana.TAIR.04232008
Version: 1.3.1000
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 6b8a31a228dbcf4468974f5ec1d98467
NeedsCompilation: no
Title: Full genome sequences for Arabidopsis thaliana (TAIR version
from April 23, 2008)
Description: Full genome sequences for Arabidopsis thaliana as provided
by TAIR (snapshot from April 23, 2008) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Arabidopsis_thaliana
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver:
src/contrib/BSgenome.Athaliana.TAIR.04232008_1.3.1000.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Athaliana.TAIR.TAIR9
Version: 1.3.1000
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 8c6709a5f544616d59f4d39aac5787a7
NeedsCompilation: no
Title: Full genome sequences for Arabidopsis thaliana (TAIR9)
Description: Full genome sequences for Arabidopsis thaliana as provided
by TAIR (TAIR9 Genome Release) and stored in Biostrings
objects. Note that TAIR10 is an "annotation release" based on
the same genome assembly as TAIR9.
biocViews: AnnotationData, Genetics, BSgenome, Arabidopsis_thaliana
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver: src/contrib/BSgenome.Athaliana.TAIR.TAIR9_1.3.1000.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: trena
dependencyCount: 41
Package: BSgenome.Btaurus.UCSC.bosTau3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: fe6c4d5853f91c3db3e716ddbc773580
NeedsCompilation: no
Title: Full genome sequences for Bos taurus (UCSC version bosTau3)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Btaurus.UCSC.bosTau3.masked
importsMe: BSgenome.Btaurus.UCSC.bosTau3.masked
dependencyCount: 41
Package: BSgenome.Btaurus.UCSC.bosTau3.masked
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Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau3
Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau3
License: Artistic-2.0
MD5sum: 50f7da5907cbe0d08183dc7161a8ca56
NeedsCompilation: no
Title: Full masked genome sequences for Bos taurus (UCSC version
bosTau3)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver:
src/contrib/BSgenome.Btaurus.UCSC.bosTau3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Btaurus.UCSC.bosTau4
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 162cd253c719e347df5748ebb407a191
NeedsCompilation: no
Title: Full genome sequences for Bos taurus (UCSC version bosTau4)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau4_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Btaurus.UCSC.bosTau4.masked
importsMe: BSgenome.Btaurus.UCSC.bosTau4.masked
dependencyCount: 41
Package: BSgenome.Btaurus.UCSC.bosTau4.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau4
Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau4
License: Artistic-2.0
MD5sum: 7c5294349c7061adfb3948bc5659afeb
NeedsCompilation: no
Title: Full masked genome sequences for Bos taurus (UCSC version
bosTau4)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Btaurus.UCSC.bosTau4,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver:
src/contrib/BSgenome.Btaurus.UCSC.bosTau4.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Btaurus.UCSC.bosTau6
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b22391e0678fc3743daa4b77ecc55f66
NeedsCompilation: no
Title: Full genome sequences for Bos taurus (UCSC version bosTau6)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau6_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Btaurus.UCSC.bosTau6.masked
importsMe: BSgenome.Btaurus.UCSC.bosTau6.masked
dependencyCount: 41
Package: BSgenome.Btaurus.UCSC.bosTau6.masked
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Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau6
Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau6
License: Artistic-2.0
MD5sum: a176de6b1b91854d47e783b8249dbf58
NeedsCompilation: no
Title: Full masked genome sequences for Bos taurus (UCSC version
bosTau6)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Btaurus.UCSC.bosTau6,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver:
src/contrib/BSgenome.Btaurus.UCSC.bosTau6.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: CNVRanger
dependencyCount: 42
Package: BSgenome.Btaurus.UCSC.bosTau8
Version: 1.4.2
Depends: BSgenome (>= 1.35.20)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 61ababa7b2b5360fceeb06f0bf49b208
NeedsCompilation: no
Title: Full genome sequences for Bos taurus (UCSC version bosTau8)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau8_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Btaurus.UCSC.bosTau9
Version: 1.4.2
Depends: BSgenome (>= 1.55.1)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 9b3343725d85c093999413d91218079d
NeedsCompilation: no
Title: Full genome sequences for Bos taurus (UCSC version bosTau9)
Description: Full genome sequences for Bos taurus (Cow) as provided by
UCSC (bosTau9, Apr. 2018) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau9_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Carietinum.NCBI.v1
Version: 1.0.0
Depends: BSgenome (>= 1.42.0)
Imports: BSgenome
License: GPL-3
MD5sum: eef018ecce6d32852aa18ac39cf377c6
NeedsCompilation: no
Title: Cicer arietinum (Chickpea) full genome (NCBI version ASM33114v1)
Description: Full genome sequences for Cicer arietinum (Chickpea) as
provided by NCBI (ASM33114v1, Jan. 2013) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Cicer_arietinum
Author: Jose V. Die <jose.die@uco.es>
Maintainer: Jose V. Die <jose.die@uco.es>
organism: Cicer arietinum
source.ver: src/contrib/BSgenome.Carietinum.NCBI.v1_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Celegans.UCSC.ce10
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 98a8ca836d6db23e46674552669d7942
NeedsCompilation: no
Title: Full genome sequences for Caenorhabditis elegans (UCSC version
ce10)
Description: Full genome sequences for Caenorhabditis elegans (Worm) as
provided by UCSC (ce10, Oct. 2010) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/BSgenome.Celegans.UCSC.ce10_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ChIPpeakAnno, triplex
dependencyCount: 41
Package: BSgenome.Celegans.UCSC.ce11
Version: 1.4.2
Depends: BSgenome (>= 1.36.0)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b80e24149a0c6ed323d0c9a6d112ef52
NeedsCompilation: no
Title: Full genome sequences for Caenorhabditis elegans (UCSC version
ce11)
Description: Full genome sequences for Caenorhabditis elegans (Worm) as
provided by UCSC (ce11, Feb. 2013) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/BSgenome.Celegans.UCSC.ce11_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomicFeatures, periodicDNA
dependencyCount: 41
Package: BSgenome.Celegans.UCSC.ce2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b2bf7eec2b07685cf9dcdf42840db208
NeedsCompilation: no
Title: Full genome sequences for Caenorhabditis elegans (UCSC version
ce2)
Description: Full genome sequences for Caenorhabditis elegans (Worm) as
provided by UCSC (ce2, Mar. 2004) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/BSgenome.Celegans.UCSC.ce2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: REDseq
suggestsMe: Biostrings, BSgenome, GenomeInfoDb, IRanges
dependencyCount: 41
Package: BSgenome.Celegans.UCSC.ce6
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: TxDb.Celegans.UCSC.ce6.ensGene
License: Artistic-2.0
MD5sum: cb86ff861d8f660c2abd8fc1907d84a6
NeedsCompilation: no
Title: Full genome sequences for Caenorhabditis elegans (UCSC version
ce6)
Description: Full genome sequences for Caenorhabditis elegans (Worm) as
provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/BSgenome.Celegans.UCSC.ce6_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Cfamiliaris.UCSC.canFam2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b98f5289ed5d362cd815db9352598634
NeedsCompilation: no
Title: Full genome sequences for Canis lupus familiaris (UCSC version
canFam2)
Description: Full genome sequences for Canis lupus familiaris (Dog) as
provided by UCSC (canFam2, May 2005) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis lupus familiaris
source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Cfamiliaris.UCSC.canFam2.masked
importsMe: BSgenome.Cfamiliaris.UCSC.canFam2.masked
dependencyCount: 41
Package: BSgenome.Cfamiliaris.UCSC.canFam2.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Cfamiliaris.UCSC.canFam2
Imports: BSgenome, BSgenome.Cfamiliaris.UCSC.canFam2
License: Artistic-2.0
MD5sum: 6f921533bb83f83f43b8d227b00a48cb
NeedsCompilation: no
Title: Full masked genome sequences for Canis lupus familiaris (UCSC
version canFam2)
Description: Full genome sequences for Canis lupus familiaris (Dog) as
provided by UCSC (canFam2, May 2005) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis lupus familiaris
source.ver:
src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Cfamiliaris.UCSC.canFam3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: efcdc531042be86f99a734cd69c0688c
NeedsCompilation: no
Title: Full genome sequences for Canis lupus familiaris (UCSC version
canFam3)
Description: Full genome sequences for Canis lupus familiaris (Dog) as
provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis lupus familiaris
source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Cfamiliaris.UCSC.canFam3.masked
importsMe: BSgenome.Cfamiliaris.UCSC.canFam3.masked
dependencyCount: 41
Package: BSgenome.Cfamiliaris.UCSC.canFam3.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Cfamiliaris.UCSC.canFam3
Imports: BSgenome, BSgenome.Cfamiliaris.UCSC.canFam3
License: Artistic-2.0
MD5sum: 8e2246f51fc967dc2ed748cf967a7649
NeedsCompilation: no
Title: Full masked genome sequences for Canis lupus familiaris (UCSC
version canFam3)
Description: Full genome sequences for Canis lupus familiaris (Dog) as
provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Cfamiliaris.UCSC.canFam3, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis lupus familiaris
source.ver:
src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Cjacchus.UCSC.calJac3
Version: 1.4.2
Depends: BSgenome (>= 1.50.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 41f927aa0d6ffbdaa6ad93c9135409e6
NeedsCompilation: no
Title: Full genome sequences for Callithrix jacchus (UCSC version
calJac3)
Description: Full genome sequences for Callithrix jacchus (Marmoset) as
provided by UCSC (calJac3, Mar. 2009) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Callithrix_jacchus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Callithrix jacchus
source.ver: src/contrib/BSgenome.Cjacchus.UCSC.calJac3_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Creinhardtii.JGI.v5.6
Version: 1.5.0
Depends: R (>= 3.5.0), BSgenome (>= 1.58.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 2bd1be53d19249ac14ad7f39dc00af0e
NeedsCompilation: no
Title: Full genome sequences for Chlamydomonas reinhardtii (v5.6)
Description: Full genome sequences for Chlamydomonas reinhardtii (v5.6)
as provided by JGI and stored in Biostrings objects. The data
in this package is public. See
'citation("BSgenome.Creinhardtii.JGI.v5.6")' for how to cite in
publications.
biocViews: AnnotationData, Genetics, BSgenome,
Chlamydomonas_reinhardtii
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Chlamydomonas reinhardtii
source.ver: src/contrib/BSgenome.Creinhardtii.JGI.v5.6_1.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Dmelanogaster.UCSC.dm2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: ebc88df5595fc7aad588b8f3f7de4784
NeedsCompilation: no
Title: Full genome sequences for Drosophila melanogaster (UCSC version
dm2)
Description: Full genome sequences for Drosophila melanogaster (Fly) as
provided by UCSC (dm2, Apr. 2004) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Dmelanogaster.UCSC.dm2.masked
importsMe: BSgenome.Dmelanogaster.UCSC.dm2.masked
dependencyCount: 41
Package: BSgenome.Dmelanogaster.UCSC.dm2.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Dmelanogaster.UCSC.dm2
Imports: BSgenome, BSgenome.Dmelanogaster.UCSC.dm2
License: Artistic-2.0
MD5sum: ae7ca3053e97a0d6bd20bc2b9635ecce
NeedsCompilation: no
Title: Full masked genome sequences for Drosophila melanogaster (UCSC
version dm2)
Description: Full genome sequences for Drosophila melanogaster (Fly) as
provided by UCSC (dm2, Apr. 2004) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Dmelanogaster.UCSC.dm2, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver:
src/contrib/BSgenome.Dmelanogaster.UCSC.dm2.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Dmelanogaster.UCSC.dm3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: TxDb.Dmelanogaster.UCSC.dm3.ensGene
License: Artistic-2.0
MD5sum: b7ceebf7bfee766596f602f9e808d069
NeedsCompilation: no
Title: Full genome sequences for Drosophila melanogaster (UCSC version
dm3)
Description: Full genome sequences for Drosophila melanogaster (Fly) as
provided by UCSC (dm3, Apr. 2006) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Dmelanogaster.UCSC.dm3.masked
importsMe: BSgenome.Dmelanogaster.UCSC.dm3.masked
suggestsMe: Biostrings, GenomicAlignments, GenomicFeatures, gmapR,
PWMEnrich
dependencyCount: 41
Package: BSgenome.Dmelanogaster.UCSC.dm3.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Dmelanogaster.UCSC.dm3
Imports: BSgenome, BSgenome.Dmelanogaster.UCSC.dm3
License: Artistic-2.0
MD5sum: 592e7ec451d126b2d314ab6c75d86830
NeedsCompilation: no
Title: Full masked genome sequences for Drosophila melanogaster (UCSC
version dm3)
Description: Full genome sequences for Drosophila melanogaster (Fly) as
provided by UCSC (dm3, Apr. 2006) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver:
src/contrib/BSgenome.Dmelanogaster.UCSC.dm3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Dmelanogaster.UCSC.dm6
Version: 1.4.1
Depends: BSgenome (>= 1.35.10)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: f9d6e406b7893a17c08edd4521c2802f
NeedsCompilation: no
Title: Full genome sequences for Drosophila melanogaster (UCSC version
dm6)
Description: Full genome sequences for Drosophila melanogaster (Fly) as
provided by UCSC (dm6, Aug. 2014) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm6_1.4.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: periodicDNA
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer10
Version: 1.4.2
Depends: BSgenome (>= 1.36.0)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b8dbcc8a338a021ed35656b27b3dd4c0
NeedsCompilation: no
Title: Full genome sequences for Danio rerio (UCSC version danRer10)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer10_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: CNEr, periodicDNA, ribosomeProfilingQC
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer11
Version: 1.4.2
Depends: BSgenome (>= 1.55.1)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: cd586da56ca88ccebb85804f992ba204
NeedsCompilation: no
Title: Full genome sequences for Danio rerio (UCSC version danRer11)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer11, May 2017) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer11_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer5
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: b1fee4bcc0d9cebb2bbdec5cb851f00d
NeedsCompilation: no
Title: Full genome sequences for Danio rerio (UCSC version danRer5)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer5_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Drerio.UCSC.danRer5.masked
importsMe: BSgenome.Drerio.UCSC.danRer5.masked
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer5.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer5
Imports: BSgenome, BSgenome.Drerio.UCSC.danRer5
License: Artistic-2.0
MD5sum: 8f0623bcbe1743754a56c55599b535f3
NeedsCompilation: no
Title: Full masked genome sequences for Danio rerio (UCSC version
danRer5)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Drerio.UCSC.danRer5, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver:
src/contrib/BSgenome.Drerio.UCSC.danRer5.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Drerio.UCSC.danRer6
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 537d37d29d97ae0c31d77decc67b25b0
NeedsCompilation: no
Title: Full genome sequences for Danio rerio (UCSC version danRer6)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer6_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Drerio.UCSC.danRer6.masked
importsMe: BSgenome.Drerio.UCSC.danRer6.masked
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer6.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer6
Imports: BSgenome, BSgenome.Drerio.UCSC.danRer6
License: Artistic-2.0
MD5sum: 71c9b05c27b8d2e05735e6494a8f17ba
NeedsCompilation: no
Title: Full masked genome sequences for Danio rerio (UCSC version
danRer6)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Drerio.UCSC.danRer6, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver:
src/contrib/BSgenome.Drerio.UCSC.danRer6.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Drerio.UCSC.danRer7
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 766b407a46f20d69a143eab0809eb10a
NeedsCompilation: no
Title: Full genome sequences for Danio rerio (UCSC version danRer7)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Drerio.UCSC.danRer7.masked
importsMe: cleanUpdTSeq, BSgenome.Drerio.UCSC.danRer7.masked
suggestsMe: CAGEr, ChIPpeakAnno, heatmaps, motifbreakR, seqPattern
dependencyCount: 41
Package: BSgenome.Drerio.UCSC.danRer7.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer7
Imports: BSgenome, BSgenome.Drerio.UCSC.danRer7
License: Artistic-2.0
MD5sum: 5d68af24477d006ed22e7342ff97ac16
NeedsCompilation: no
Title: Full masked genome sequences for Danio rerio (UCSC version
danRer7)
Description: Full genome sequences for Danio rerio (Zebrafish) as
provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Drerio.UCSC.danRer7, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver:
src/contrib/BSgenome.Drerio.UCSC.danRer7.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Dvirilis.Ensembl.dvircaf1
Version: 1.4.3
Depends: BSgenome (>= 1.54.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 6a6a6dc7b2d68a741c85525045a67890
NeedsCompilation: no
Title: Full genome sequences for Drosophila virilis (assembly
dvir_caf1)
Description: Full genome sequences for Drosophila virilis (assembly
dvir_caf1, GenBank assembly accession GCA_000005245.1) as
provided by Ensembl and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Drosophila_virilis
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila virilis
source.ver: src/contrib/BSgenome.Dvirilis.Ensembl.dvircaf1_1.4.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ecoli.NCBI.20080805
Version: 1.3.1000
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: c653e9cbee3faeb6fd5759b7575f234d
NeedsCompilation: no
Title: Escherichia coli full genomes
Description: Escherichia coli full genomes for several strains as
provided by NCBI on 2008/08/05 and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Escherichia_coli
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Escherichia coli
source.ver: src/contrib/BSgenome.Ecoli.NCBI.20080805_1.3.1000.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: Basic4Cseq
suggestsMe: ChIPpeakAnno, diffHic, dpeak, ramwas
dependencyCount: 41
Package: BSgenome.Gaculeatus.UCSC.gasAcu1
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 412aa0570d9c556861b7bb9a5bbc2007
NeedsCompilation: no
Title: Full genome sequences for Gasterosteus aculeatus (UCSC version
gasAcu1)
Description: Full genome sequences for Gasterosteus aculeatus
(Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and
stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Gasterosteus_aculeatus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gasterosteus aculeatus
source.ver: src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Gaculeatus.UCSC.gasAcu1.masked
importsMe: BSgenome.Gaculeatus.UCSC.gasAcu1.masked
dependencyCount: 41
Package: BSgenome.Gaculeatus.UCSC.gasAcu1.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Gaculeatus.UCSC.gasAcu1
Imports: BSgenome, BSgenome.Gaculeatus.UCSC.gasAcu1
License: Artistic-2.0
MD5sum: 9d9b9e70f4f4624ee4a2b09a59d44510
NeedsCompilation: no
Title: Full masked genome sequences for Gasterosteus aculeatus (UCSC
version gasAcu1)
Description: Full genome sequences for Gasterosteus aculeatus
(Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and
stored in Biostrings objects. The sequences are the same as in
BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Gasterosteus_aculeatus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gasterosteus aculeatus
source.ver:
src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Ggallus.UCSC.galGal3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: a463e5ccfc8c6d2c62a6ade0da65dbc4
NeedsCompilation: no
Title: Full genome sequences for Gallus gallus (UCSC version galGal3)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal3, May 2006) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Ggallus.UCSC.galGal3.masked
importsMe: BSgenome.Ggallus.UCSC.galGal3.masked
suggestsMe: CNEr
dependencyCount: 41
Package: BSgenome.Ggallus.UCSC.galGal3.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Ggallus.UCSC.galGal3
Imports: BSgenome, BSgenome.Ggallus.UCSC.galGal3
License: Artistic-2.0
MD5sum: b3224e3a2b15de379c068e61cedfefa6
NeedsCompilation: no
Title: Full masked genome sequences for Gallus gallus (UCSC version
galGal3)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal3, May 2006) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Ggallus.UCSC.galGal3, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver:
src/contrib/BSgenome.Ggallus.UCSC.galGal3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Ggallus.UCSC.galGal4
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: c2cb4bfc39db93c060e78d8d12542c11
NeedsCompilation: no
Title: Full genome sequences for Gallus gallus (UCSC version galGal4)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal4_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Ggallus.UCSC.galGal4.masked
importsMe: BSgenome.Ggallus.UCSC.galGal4.masked
dependencyCount: 41
Package: BSgenome.Ggallus.UCSC.galGal4.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Ggallus.UCSC.galGal4
Imports: BSgenome, BSgenome.Ggallus.UCSC.galGal4
License: Artistic-2.0
MD5sum: 0166121ebd8d0b6a4d24d67e175cfe81
NeedsCompilation: no
Title: Full masked genome sequences for Gallus gallus (UCSC version
galGal4)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Ggallus.UCSC.galGal4, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver:
src/contrib/BSgenome.Ggallus.UCSC.galGal4.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Ggallus.UCSC.galGal5
Version: 1.4.2
Depends: BSgenome (>= 1.40.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 93b42354404edd848b21ea6781ca135c
NeedsCompilation: no
Title: Full genome sequences for Gallus gallus (UCSC version galGal5)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal5, Dec. 2015) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal5_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ggallus.UCSC.galGal6
Version: 1.4.2
Depends: BSgenome (>= 1.55.1)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 25ef08a5430fb337dbf752ca3378ea3e
NeedsCompilation: no
Title: Full genome sequences for Gallus gallus (UCSC version galGal6)
Description: Full genome sequences for Gallus gallus (Chicken) as
provided by UCSC (galGal6, Mar. 2018) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal6_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Hsapiens.1000genomes.hs37d5
Version: 0.99.1
Depends: BSgenome (>= 1.34.0)
License: Artistic-2.0
MD5sum: 164e1692d38fefa499c2c8ac5fc22793
NeedsCompilation: no
Title: 1000genomes Reference Genome Sequence (hs37d5)
Description: 1000genomes Phase2 Reference Genome Sequence (hs37d5),
based on NCBI GRCh37.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
organism: Homo sapiens
source.ver:
src/contrib/BSgenome.Hsapiens.1000genomes.hs37d5_0.99.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: SomaticSignatures, SparseSignatures, VariantFiltering,
ICAMS
dependencyCount: 41
Package: BSgenome.Hsapiens.NCBI.GRCh38
Version: 1.3.1000
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 733d324b34d34d7da8c4bf38459f4fae
NeedsCompilation: no
Title: Full genome sequences for Homo sapiens (GRCh38)
Description: Full genome sequences for Homo sapiens (Human) as provided
by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/BSgenome.Hsapiens.NCBI.GRCh38_1.3.1000.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: alpine, bambu, BSgenome, ensembldb, GenomeInfoDb, h5vc,
scmeth, SNPlocs.Hsapiens.dbSNP141.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP141.GRCh38, NanoporeRNASeq
dependencyCount: 41
Package: BSgenome.Hsapiens.UCSC.hg17
Version: 1.3.1000
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: cbea3029c3d3125a88e6c061c3d3abde
NeedsCompilation: no
Title: Full genome sequences for Homo sapiens (UCSC version hg17)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg17, May 2004) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg17_1.3.1000.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Hsapiens.UCSC.hg17.masked
importsMe: BSgenome.Hsapiens.UCSC.hg17.masked
dependencyCount: 41
Package: BSgenome.Hsapiens.UCSC.hg17.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Hsapiens.UCSC.hg17
Imports: BSgenome, BSgenome.Hsapiens.UCSC.hg17
License: Artistic-2.0
MD5sum: ff6ee5196f234c5a2a3bcdd052c3c08e
NeedsCompilation: no
Title: Full masked genome sequences for Homo sapiens (UCSC version
hg17)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg17, May 2004) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Hsapiens.UCSC.hg17,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full genome sequences for Homo sapiens (UCSC version hg18)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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License: Artistic-2.0
MD5sum: e6a31e3cba34ce5e0eb6f76d2c19870c
NeedsCompilation: no
Title: Full masked genome sequences for Homo sapiens (UCSC version
hg18)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg18, Mar. 2006) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Hsapiens.UCSC.hg18,
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the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full genome sequences for Homo sapiens (UCSC version hg19, based
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Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full masked genome sequences for Homo sapiens (UCSC version
hg19, based on GRCh37.p13)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Hsapiens.UCSC.hg19, except that each of them has the 4
following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full genome sequences for Homo sapiens (UCSC version hg38, based
on GRCh38.p12)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg38, based on GRCh38.p12) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full masked genome sequences for Homo sapiens (UCSC version
hg38, based on GRCh38.p12)
Description: Full genome sequences for Homo sapiens (Human) as provided
by UCSC (hg38, based on GRCh38.p12) and stored in Biostrings
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mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
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Title: Full genome sequences for Monodelphis domestica (UCSC version
monDom5)
Description: Full genome sequences for Monodelphis domestica (Opossum)
as provided by UCSC (monDom5, Oct. 2006) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Monodelphis_domestica
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Monodelphis domestica
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dependencyCount: 41
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Title: Full genome sequences for Macaca fascicularis
(Macaca_fascicularis_5.0)
Description: Full genome sequences for Macaca fascicularis (long-tailed
macaque) as provided by NCBI (Macaca_fascicularis_5.0,
2013-06-12) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_fascicularis
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca fascicularis
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dependencyCount: 41
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License: Artistic-2.0
MD5sum: c33e71746ce551bcbcd22be1979aee63
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Title: Full genome sequences for Mustela putorius furo (UCSC version
musFur1)
Description: Full genome sequences for Mustela putorius furo (Ferret)
as provided by UCSC (musFur1, Apr. 2011) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Mustela_furo
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mustela putorius furo
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dependencyCount: 41
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Title: Full genome sequences for Macaca mulatta (UCSC version rheMac10)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac10, Feb. 2019) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
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hasLICENSE: FALSE
dependencyCount: 41
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MD5sum: 90c43e127e76dfd7cea90de9e1af9a50
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Title: Full genome sequences for Macaca mulatta (UCSC version rheMac2)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
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dependencyCount: 41
Package: BSgenome.Mmulatta.UCSC.rheMac2.masked
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License: Artistic-2.0
MD5sum: 7602d86b68df7e4c8d336fede4090a62
NeedsCompilation: no
Title: Full masked genome sequences for Macaca mulatta (UCSC version
rheMac2)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Mmulatta.UCSC.rheMac2, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default. NOTE: In
most assemblies available at UCSC, Tandem Repeats Finder
repeats were filtered to retain only the repeats with period <=
12. However, the filtering was omitted for this assembly, so
the TRF masks contain all Tandem Repeats Finder results.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
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dependencyCount: 42
Package: BSgenome.Mmulatta.UCSC.rheMac3
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License: Artistic-2.0
MD5sum: dfa1ecb9d0bb7a5d9fa628092fb1c354
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Title: Full genome sequences for Macaca mulatta (UCSC version rheMac3)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
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dependencyCount: 41
Package: BSgenome.Mmulatta.UCSC.rheMac3.masked
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License: Artistic-2.0
MD5sum: 94f8714865655d3144e14f6fc5c24e76
NeedsCompilation: no
Title: Full masked genome sequences for Macaca mulatta (UCSC version
rheMac3)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Mmulatta.UCSC.rheMac3, except that each of them has
the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
source.ver:
src/contrib/BSgenome.Mmulatta.UCSC.rheMac3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Mmulatta.UCSC.rheMac8
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Imports: BSgenome
License: Artistic-2.0
MD5sum: e9ad1f70f652c62554e2c5af7638c015
NeedsCompilation: no
Title: Full genome sequences for Macaca mulatta (UCSC version rheMac8)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
provided by UCSC (rheMac8, Nov. 2015) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac8_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Mmusculus.UCSC.mm10
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Imports: BSgenome
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License: Artistic-2.0
MD5sum: 929f8bd0ea9ad416ecc0c2c002500414
NeedsCompilation: no
Title: Full genome sequences for Mus musculus (UCSC version mm10)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm10, Dec. 2011) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm10_1.4.0.tar.gz
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hasNEWS: FALSE
hasINSTALL: FALSE
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periodicDNA, scmeth, SCOPE, ActiveDriverWGS, ICAMS, MicroSEC
dependencyCount: 41
Package: BSgenome.Mmusculus.UCSC.mm10.masked
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License: Artistic-2.0
MD5sum: c6a5365fa1a0d2a5ecb63752960eb3d7
NeedsCompilation: no
Title: Full masked genome sequences for Mus musculus (UCSC version
mm10)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm10, Dec. 2011) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Mmusculus.UCSC.mm10,
except that each of them has the 2 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), and (2) the mask of
intra-contig ambiguities (AMB mask).
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver:
src/contrib/BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tar.gz
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hasNEWS: FALSE
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hasLICENSE: FALSE
suggestsMe: podkat, r3Cseq
dependencyCount: 42
Package: BSgenome.Mmusculus.UCSC.mm8
Version: 1.4.0
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Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: f6aa91cdce2607f30a34f6dd0d678aff
NeedsCompilation: no
Title: Full genome sequences for Mus musculus (UCSC version mm8)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm8_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Mmusculus.UCSC.mm8.masked
importsMe: BSgenome.Mmusculus.UCSC.mm8.masked
dependencyCount: 41
Package: BSgenome.Mmusculus.UCSC.mm8.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Mmusculus.UCSC.mm8
Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm8
License: Artistic-2.0
MD5sum: 5809f925e0fe7c4b73b78a90c9a36fdd
NeedsCompilation: no
Title: Full masked genome sequences for Mus musculus (UCSC version mm8)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Mmusculus.UCSC.mm8,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver:
src/contrib/BSgenome.Mmusculus.UCSC.mm8.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: rTRM
dependencyCount: 42
Package: BSgenome.Mmusculus.UCSC.mm9
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: TxDb.Mmusculus.UCSC.mm9.knownGene
License: Artistic-2.0
MD5sum: 5a30ba2b4481a17e8e6979eb69eabf78
NeedsCompilation: no
Title: Full genome sequences for Mus musculus (UCSC version mm9)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm9_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Mmusculus.UCSC.mm9.masked
importsMe: musicatk, SPLINTER, BSgenome.Mmusculus.UCSC.mm9.masked
suggestsMe: circRNAprofiler, compEpiTools, MEDME, methrix, MMDiff2,
CAGEWorkflow, ActiveDriverWGS
dependencyCount: 41
Package: BSgenome.Mmusculus.UCSC.mm9.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Mmusculus.UCSC.mm9
Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm9
License: Artistic-2.0
MD5sum: a5dadab14e55cdfc39649ede7a8483d5
NeedsCompilation: no
Title: Full masked genome sequences for Mus musculus (UCSC version mm9)
Description: Full genome sequences for Mus musculus (Mouse) as provided
by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Mmusculus.UCSC.mm9,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver:
src/contrib/BSgenome.Mmusculus.UCSC.mm9.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: r3Cseq
dependencyCount: 42
Package: BSgenome.Osativa.MSU.MSU7
Version: 0.99.2
Depends: BSgenome (>= 1.58.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 80648058756a2f74aa5a246d38ecf576
NeedsCompilation: no
Title: Oryza sativa full genome (MSU7)
Description: Oryza sativa full genome as provided by MSU (MSU7 Genome
Release) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Oryza_sativa
Author: Wen Yao <ywhzau@gmail.com>
Maintainer: Wen Yao <ywhzau@gmail.com>
organism: Oryza sativa
source.ver: src/contrib/BSgenome.Osativa.MSU.MSU7_0.99.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ppaniscus.UCSC.panPan1
Version: 1.4.3
Depends: BSgenome (>= 1.56.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 186adb59264d468d17c0f6374e2eb1f6
NeedsCompilation: no
Title: Full genome sequences for Pan paniscus (UCSC version panPan1)
Description: Full genome sequences for Pan paniscus (Bonobo) as
provided by UCSC (panPan1, May 2012) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_paniscus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan paniscus
source.ver: src/contrib/BSgenome.Ppaniscus.UCSC.panPan1_1.4.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ppaniscus.UCSC.panPan2
Version: 1.4.3
Depends: BSgenome (>= 1.56.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 74973376a6377d6820d6cd7fb3655a19
NeedsCompilation: no
Title: Full genome sequences for Pan paniscus (UCSC version panPan2)
Description: Full genome sequences for Pan paniscus (Bonobo) as
provided by UCSC (panPan2, Dec. 2015) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_paniscus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan paniscus
source.ver: src/contrib/BSgenome.Ppaniscus.UCSC.panPan2_1.4.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ptroglodytes.UCSC.panTro2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 780200c315779ac75fcf0bdeb9a2eb8c
NeedsCompilation: no
Title: Full genome sequences for Pan troglodytes (UCSC version panTro2)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Ptroglodytes.UCSC.panTro2.masked
importsMe: BSgenome.Ptroglodytes.UCSC.panTro2.masked
dependencyCount: 41
Package: BSgenome.Ptroglodytes.UCSC.panTro2.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro2
Imports: BSgenome, BSgenome.Ptroglodytes.UCSC.panTro2
License: Artistic-2.0
MD5sum: e6d069be23712b483b4e4c71554594cf
NeedsCompilation: no
Title: Full masked genome sequences for Pan troglodytes (UCSC version
panTro2)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Ptroglodytes.UCSC.panTro2, except that each of them
has the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver:
src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Ptroglodytes.UCSC.panTro3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 4677c75befd60742f3fc2a54c7f60666
NeedsCompilation: no
Title: Full genome sequences for Pan troglodytes (UCSC version panTro3)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Ptroglodytes.UCSC.panTro3.masked
importsMe: BSgenome.Ptroglodytes.UCSC.panTro3.masked
dependencyCount: 41
Package: BSgenome.Ptroglodytes.UCSC.panTro3.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro3
Imports: BSgenome, BSgenome.Ptroglodytes.UCSC.panTro3
License: Artistic-2.0
MD5sum: 89e96b3796d3b8e8793146597506e3f5
NeedsCompilation: no
Title: Full masked genome sequences for Pan troglodytes (UCSC version
panTro3)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them
has the 4 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
mask), (3) the mask of repeats from RepeatMasker (RM mask), and
(4) the mask of repeats from Tandem Repeats Finder (TRF mask).
Only the AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver:
src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Ptroglodytes.UCSC.panTro5
Version: 1.4.2
Depends: BSgenome (>= 1.40.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 5b88573dd9c3ef838699b65934f8abe3
NeedsCompilation: no
Title: Full genome sequences for Pan troglodytes (UCSC version panTro5)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro5, May 2016) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro5_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Ptroglodytes.UCSC.panTro6
Version: 1.4.2
Depends: BSgenome (>= 1.48.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 1df05d985374e9edc1dd7c3df5118338
NeedsCompilation: no
Title: Full genome sequences for Pan troglodytes (UCSC version panTro6)
Description: Full genome sequences for Pan troglodytes (Chimp) as
provided by UCSC (panTro6, Jan. 2018) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro6_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Rnorvegicus.UCSC.rn4
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: TxDb.Rnorvegicus.UCSC.rn4.ensGene
License: Artistic-2.0
MD5sum: 3afe6729237781445d99ec38228ee1a8
NeedsCompilation: no
Title: Full genome sequences for Rattus norvegicus (UCSC version rn4)
Description: Full genome sequences for Rattus norvegicus (Rat) as
provided by UCSC (rn4, Nov. 2004) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn4_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Rnorvegicus.UCSC.rn4.masked
importsMe: BSgenome.Rnorvegicus.UCSC.rn4.masked
dependencyCount: 41
Package: BSgenome.Rnorvegicus.UCSC.rn4.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Rnorvegicus.UCSC.rn4
Imports: BSgenome, BSgenome.Rnorvegicus.UCSC.rn4
License: Artistic-2.0
MD5sum: 7e2ea7df588b6b10515e07ea3868c568
NeedsCompilation: no
Title: Full masked genome sequences for Rattus norvegicus (UCSC version
rn4)
Description: Full genome sequences for Rattus norvegicus (Rat) as
provided by UCSC (rn4, Nov. 2004) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Rnorvegicus.UCSC.rn4, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver:
src/contrib/BSgenome.Rnorvegicus.UCSC.rn4.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Rnorvegicus.UCSC.rn5
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
Suggests: TxDb.Rnorvegicus.UCSC.rn5.refGene
License: Artistic-2.0
MD5sum: 723b1f3ced395ef638b2d68053b05c86
NeedsCompilation: no
Title: Full genome sequences for Rattus norvegicus (UCSC version rn5)
Description: Full genome sequences for Rattus norvegicus (Rat) as
provided by UCSC (rn5, Mar. 2012) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn5_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Rnorvegicus.UCSC.rn5.masked
importsMe: BSgenome.Rnorvegicus.UCSC.rn5.masked
suggestsMe: BSgenome
dependencyCount: 41
Package: BSgenome.Rnorvegicus.UCSC.rn5.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.8), BSgenome.Rnorvegicus.UCSC.rn5
Imports: BSgenome, BSgenome.Rnorvegicus.UCSC.rn5
License: Artistic-2.0
MD5sum: 663233774b79012cb2cc08224ac275ed
NeedsCompilation: no
Title: Full masked genome sequences for Rattus norvegicus (UCSC version
rn5)
Description: Full genome sequences for Rattus norvegicus (Rat) as
provided by UCSC (rn5, Mar. 2012) and stored in Biostrings
objects. The sequences are the same as in
BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the
4 following masks on top: (1) the mask of assembly gaps (AGAPS
mask), (2) the mask of intra-contig ambiguities (AMB mask), (3)
the mask of repeats from RepeatMasker (RM mask), and (4) the
mask of repeats from Tandem Repeats Finder (TRF mask). Only the
AGAPS and AMB masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver:
src/contrib/BSgenome.Rnorvegicus.UCSC.rn5.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: r3Cseq
dependencyCount: 42
Package: BSgenome.Rnorvegicus.UCSC.rn6
Version: 1.4.1
Depends: BSgenome (>= 1.35.12)
Imports: BSgenome
Suggests: GenomicFeatures
License: Artistic-2.0
MD5sum: 60d3fb201e0b1475912aaf681927096d
NeedsCompilation: no
Title: Full genome sequences for Rattus norvegicus (UCSC version rn6)
Description: Full genome sequences for Rattus norvegicus (Rat) as
provided by UCSC (rn6, Jul. 2014) and stored in Biostrings
objects.
biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn6_1.4.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: msgbsR
dependencyCount: 41
Package: BSgenome.Scerevisiae.UCSC.sacCer1
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: ad4c29c16a9635088bf13872b4a02ed4
NeedsCompilation: no
Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version
sacCer1)
Description: Saccharomyces cerevisiae (Yeast) full genome as provided
by UCSC (sacCer1, Oct. 2003) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer1_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: BSgenome, multicrispr
dependencyCount: 41
Package: BSgenome.Scerevisiae.UCSC.sacCer2
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: f1025b4d0fa7891dc46301550163753e
NeedsCompilation: no
Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version
sacCer2)
Description: Saccharomyces cerevisiae (Yeast) full genome as provided
by UCSC (sacCer2, June 2008) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer2_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomeInfoDb, GenomicRanges, R453Plus1Toolbox,
crispRdesignR
dependencyCount: 41
Package: BSgenome.Scerevisiae.UCSC.sacCer3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 7f2d8bba69c3dcebf426d9b19a6bed30
NeedsCompilation: no
Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version
sacCer3)
Description: Saccharomyces cerevisiae (Yeast) full genome as provided
by UCSC (sacCer3, April 2011) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: generegulation
suggestsMe: DNAshapeR, EpiTxDb, gmapR, periodicDNA, trena,
tRNAscanImport
dependencyCount: 41
Package: BSgenome.Sscrofa.UCSC.susScr11
Version: 1.4.2
Depends: BSgenome (>= 1.48.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: db22832229e31e1a629d107df522dff9
NeedsCompilation: no
Title: Full genome sequences for Sus scrofa (UCSC version susScr11)
Description: Full genome sequences for Sus scrofa (Pig) as provided by
UCSC (susScr11, Feb. 2017) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver: src/contrib/BSgenome.Sscrofa.UCSC.susScr11_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Sscrofa.UCSC.susScr3
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 0457ca52a81c9d7ceadad5830169e6cf
NeedsCompilation: no
Title: Full genome sequences for Sus scrofa (UCSC version susScr3)
Description: Full genome sequences for Sus scrofa (Pig) as provided by
UCSC (susScr3, Aug. 2011) and stored in Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver: src/contrib/BSgenome.Sscrofa.UCSC.susScr3_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Sscrofa.UCSC.susScr3.masked
importsMe: BSgenome.Sscrofa.UCSC.susScr3.masked
dependencyCount: 41
Package: BSgenome.Sscrofa.UCSC.susScr3.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.11), BSgenome.Sscrofa.UCSC.susScr3
Imports: BSgenome, BSgenome.Sscrofa.UCSC.susScr3
License: Artistic-2.0
MD5sum: fd240651d22d169fd1e27a2b66e40dd7
NeedsCompilation: no
Title: Full masked genome sequences for Sus scrofa (UCSC version
susScr3)
Description: Full genome sequences for Sus scrofa (Pig) as provided by
UCSC (susScr3, Aug. 2011) and stored in Biostrings objects. The
sequences are the same as in BSgenome.Sscrofa.UCSC.susScr3,
except that each of them has the 4 following masks on top: (1)
the mask of assembly gaps (AGAPS mask), (2) the mask of
intra-contig ambiguities (AMB mask), (3) the mask of repeats
from RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver:
src/contrib/BSgenome.Sscrofa.UCSC.susScr3.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Tgondii.ToxoDB.7.0
Version: 0.99.1
Depends: BSgenome (>= 1.58.0)
Imports: BSgenome
License: GPL 3
MD5sum: f67644d1a897fe2ff4139832d4ceaf80
NeedsCompilation: no
Title: Toxoplasma gondii ME49 (ToxoDB-7.0)
Description: Toxoplasma gondii ME49 genome Release 7.0 available at
http://www.toxodb.org
biocViews: AnnotationData, Genetics, Toxoplasma_gondii
Author: Matthew Croken <matthew.croken@phd.einstein.yu.edu>, Olivier
Lucas <olucas.usf@gmail.com>
Maintainer: Matthew Croken <matthew.croken@phd.einstein.yu.edu>
organism: Toxoplasma gondii
source.ver: src/contrib/BSgenome.Tgondii.ToxoDB.7.0_0.99.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Tguttata.UCSC.taeGut1
Version: 1.4.0
Depends: BSgenome (>= 1.33.5)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 9753d9568d2a866a627673a518a1dd8a
NeedsCompilation: no
Title: Full genome sequences for Taeniopygia guttata (UCSC version
taeGut1)
Description: Full genome sequences for Taeniopygia guttata (Zebra
finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Taeniopygia guttata
source.ver: src/contrib/BSgenome.Tguttata.UCSC.taeGut1_1.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: BSgenome.Tguttata.UCSC.taeGut1.masked
importsMe: BSgenome.Tguttata.UCSC.taeGut1.masked
dependencyCount: 41
Package: BSgenome.Tguttata.UCSC.taeGut1.masked
Version: 1.3.99
Depends: BSgenome (>= 1.31.11), BSgenome.Tguttata.UCSC.taeGut1
Imports: BSgenome, BSgenome.Tguttata.UCSC.taeGut1
License: Artistic-2.0
MD5sum: 63684abb5b330bb54ff89fe78f2e6444
NeedsCompilation: no
Title: Full masked genome sequences for Taeniopygia guttata (UCSC
version taeGut1)
Description: Full genome sequences for Taeniopygia guttata (Zebra
finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in
Biostrings objects. The sequences are the same as in
BSgenome.Tguttata.UCSC.taeGut1, except that each of them has
the 2 following masks on top: (1) the mask of assembly gaps
(AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB
mask). Both masks are "active" by default.
biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Taeniopygia guttata
source.ver:
src/contrib/BSgenome.Tguttata.UCSC.taeGut1.masked_1.3.99.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 42
Package: BSgenome.Tguttata.UCSC.taeGut2
Version: 1.4.2
Depends: BSgenome (>= 1.36.0)
Imports: BSgenome
License: Artistic-2.0
MD5sum: 1d39678fb060e643f7e9c4ec25e828c0
NeedsCompilation: no
Title: Full genome sequences for Taeniopygia guttata (UCSC version
taeGut2)
Description: Full genome sequences for Taeniopygia guttata (Zebra
finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in
Biostrings objects.
biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Taeniopygia guttata
source.ver: src/contrib/BSgenome.Tguttata.UCSC.taeGut2_1.4.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Vvinifera.URGI.IGGP12Xv0
Version: 0.1
Depends: BSgenome (>= 1.38.0)
Imports: BSgenome
License: CC0
MD5sum: 3f791de6d699325a97080cd98be86d89
NeedsCompilation: no
Title: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (IGGP version 12Xv0)
Description: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (derived from Pinot Noir and close to
homozygosity after 6-9 rounds of selfing) as assembled by the
IGGP (version 12Xv0) and available at the URGI (INRA)
biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera
Author: Timothee Flutre [cre,aut]
Maintainer: Timothee Flutre <timothee.flutre@supagro.inra.fr>
organism: Vitis vinifera vinifera
source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv0_0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Vvinifera.URGI.IGGP12Xv2
Version: 0.1
Depends: BSgenome (>= 1.38.0)
Imports: BSgenome
License: CC0
MD5sum: 95472e574ab46327c19e241c381b26a2
NeedsCompilation: no
Title: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (IGGP version 12Xv2)
Description: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (derived from Pinot Noir and close to
homozygosity after 6-9 rounds of selfing) as assembled by the
IGGP (version 12Xv2) and available at the URGI (INRA)
biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera
Author: Timothee Flutre [cre,aut]
Maintainer: Timothee Flutre <timothee.flutre@supagro.inra.fr>
organism: Vitis vinifera vinifera
source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv2_0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: BSgenome.Vvinifera.URGI.IGGP8X
Version: 0.1
Depends: BSgenome (>= 1.38.0)
Imports: BSgenome
License: CC0
MD5sum: fccaf60e5c9352b9c454f7a8ecac2a20
NeedsCompilation: no
Title: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (IGGP version 8X)
Description: Full reference nuclear genome sequences for Vitis vinifera
subsp. vinifera PN40024 (derived from Pinot Noir and close to
homozygosity after 6-9 rounds of selfing) as assembled by the
IGGP (version 8X) and available at the URGI (INRA). More
details in Jaillon et al (Nature, 2007).
biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera
Author: Timothee Flutre [cre,aut]
Maintainer: Timothee Flutre <timothee.flutre@supagro.inra.fr>
organism: Vitis vinifera vinifera
source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: bsubtiliscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 7d7893d28c601206805819ae0e49b31b
NeedsCompilation: no
Title: bsubtiliscdf
Description: A package containing an environment representing the
Bsubtilis.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, bsubtilis,
Bacillus_subtilis
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/bsubtiliscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: bsubtilisprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 83568fcea2122350b7ce982e79b7ec53
NeedsCompilation: no
Title: Probe sequence data for microarrays of type bsubtilis
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Bsubtilis\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, bsubtilis,
Bacillus_subtilis
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/bsubtilisprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: canine.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Cf.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 313097118354c68b3b6fb348eb55720e
NeedsCompilation: no
Title: Affymetrix canine annotation data (chip canine)
Description: Affymetrix canine annotation data (chip canine) assembled
using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Canis_familiaris,
canine
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis familiaris
manufacturer: Affymetrix
source.ver: src/contrib/canine.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: canine.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: a69dc49a32df9cb75590793766feaee7
NeedsCompilation: no
Title: Base Level Annotation databases for canine
Description: Base annotation databases for canine, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Canis_familiaris
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis familiaris
source.ver: src/contrib/canine.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: canine2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Cf.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 5c393ea8e91c4d3eb08137bc2f301ca7
NeedsCompilation: no
Title: Affymetrix canine2 annotation data (chip canine2)
Description: Affymetrix canine2 annotation data (chip canine2)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Canis_familiaris,
canine2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis familiaris
manufacturer: Affymetrix
source.ver: src/contrib/canine2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: canine2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 78740cde98c75e6680470564a4df74c3
NeedsCompilation: no
Title: canine2cdf
Description: A package containing an environment representing the
Canine_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, canine2,
Canis_familiaris
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/canine2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: canine2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7de0f4ea616e8662dc2eaa9ab78d1f13
NeedsCompilation: no
Title: Probe sequence data for microarrays of type canine2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Canine\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, canine2,
Canis_familiaris
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/canine2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: caninecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 656f845cc66890015a4e13c5304ec262
NeedsCompilation: no
Title: caninecdf
Description: A package containing an environment representing the
Canine.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, canine,
Canis_familiaris
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/caninecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: canineprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: e5467bc9b7e54c5adce6b409ba7df767
NeedsCompilation: no
Title: Probe sequence data for microarrays of type canine
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Canine\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, canine,
Canis_familiaris
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/canineprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: celegans.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Ce.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: fb4631ee29a20c20d5766aed4c04cac1
NeedsCompilation: no
Title: Affymetrix celegans annotation data (chip celegans)
Description: Affymetrix celegans annotation data (chip celegans)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Caenorhabditis_elegans, celegans
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
manufacturer: Affymetrix
source.ver: src/contrib/celegans.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: celeganscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 1098cd99bfc5000bf9858e4a3acaf452
NeedsCompilation: no
Title: celeganscdf
Description: A package containing an environment representing the
Celegans.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, celegans,
Caenorhabditis_elegans
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/celeganscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: celegansprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7454bba10ff2dd7c03bfe0f9d450f148
NeedsCompilation: no
Title: Probe sequence data for microarrays of type celegans
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
C\_elegans\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, celegans,
Caenorhabditis_elegans
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/celegansprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ChemmineDrugs
Version: 1.0.2
Depends: R (>= 2.10.0), ChemmineR
Imports: BiocGenerics,RSQLite
Suggests: BiocStyle,knitcitations,knitr
License: Artistic-2.0
MD5sum: 2a3646e5173e93080fb5b49564f5d545
NeedsCompilation: no
Title: DrugBank data set
Description: An annotation package for use with ChemmineR. This package
includes data from DrugBank. DUD data can be downloaded using
the "DUD()" function in ChemmineR.
biocViews: AnnotationData, CustomDBSchema
Author: Kevin Horan
Maintainer: Kevin Horan <khoran@cs.ucr.edu>
VignetteBuilder: knitr
source.ver: src/contrib/ChemmineDrugs_1.0.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ChemmineR
dependencyCount: 70
Package: chicken.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Gg.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e093b861c4688cf10e53a3124ee8bfc0
NeedsCompilation: no
Title: Affymetrix chicken annotation data (chip chicken)
Description: Affymetrix chicken annotation data (chip chicken)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Gallus_gallus,
chicken
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
manufacturer: Affymetrix
source.ver: src/contrib/chicken.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: chicken.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 8132dfe942ac72f6cd9a1cbe816c5bee
NeedsCompilation: no
Title: Base Level Annotation databases for chicken
Description: Base annotation databases for chicken, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Gallus_gallus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/chicken.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: chickencdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: ab0097b4b7b6c4d94360feb84ab69972
NeedsCompilation: no
Title: chickencdf
Description: A package containing an environment representing the
Chicken.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, chicken, Gallus_gallus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/chickencdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: chickenprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: b33599081ce1ba768ff7992e143c01d0
NeedsCompilation: no
Title: Probe sequence data for microarrays of type chicken
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Chicken\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, chicken,
Gallus_gallus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/chickenprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: chimp.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: d153e325f53252f2cd421098889c036a
NeedsCompilation: no
Title: Base Level Annotation databases for chimp
Description: Base annotation databases for chimp, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Pan_troglodytes
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/chimp.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: citruscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 4af821a0c1ae1adf42b7dc5ce7458593
NeedsCompilation: no
Title: citruscdf
Description: A package containing an environment representing the
Citrus.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, citrus, Citrus_sp
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/citruscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: citrusprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 259b114f96d5307c447d000bd27a7d15
NeedsCompilation: no
Title: Probe sequence data for microarrays of type citrus
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Citrus\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, citrus, Citrus_sp
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/citrusprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: clariomdhumanprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 3f390b06a44187e10e4e8a60af16375b
NeedsCompilation: no
Title: Affymetrix clariomdhuman annotation data (chip
clariomdhumanprobeset)
Description: Affymetrix clariomdhuman annotation data (chip
clariomdhumanprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
clariomdhumanprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/clariomdhumanprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: clariomdhumantranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a460203ad96a4ada92b495ac0811cbe3
NeedsCompilation: no
Title: Affymetrix clariomdhuman annotation data (chip
clariomdhumantranscriptcluster)
Description: Affymetrix clariomdhuman annotation data (chip
clariomdhumantranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
clariomdhumantranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/clariomdhumantranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: clariomshumanhttranscriptcluster.db
Version: 8.7.0
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License: Artistic-2.0
MD5sum: fce4e730f50b068d8f91319754f8024f
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Title: Affymetrix clariomshumanht annotation data (chip
clariomshumanhttranscriptcluster)
Description: Affymetrix clariomshumanht annotation data (chip
clariomshumanhttranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
clariomshumanhttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver:
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dependencyCount: 29
Package: clariomshumantranscriptcluster.db
Version: 8.7.0
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License: Artistic-2.0
MD5sum: 0b92969a4bb4a2d8e972602f68c7ad1b
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Title: Affymetrix clariomshuman annotation data (chip
clariomshumantranscriptcluster)
Description: Affymetrix clariomshuman annotation data (chip
clariomshumantranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
clariomshumantranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/clariomshumantranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 29
Package: clariomsmousehttranscriptcluster.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ba6fdb1816669b4ffb2707a0fe89ef59
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Title: Affymetrix clariomsmouseht annotation data (chip
clariomsmousehttranscriptcluster)
Description: Affymetrix clariomsmouseht annotation data (chip
clariomsmousehttranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
clariomsmousehttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver:
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hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: clariomsmousetranscriptcluster.db
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License: Artistic-2.0
MD5sum: a70687be504281a4ec08c0535da4121f
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Title: Affymetrix clariomsmouse annotation data (chip
clariomsmousetranscriptcluster)
Description: Affymetrix clariomsmouse annotation data (chip
clariomsmousetranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
clariomsmousetranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/clariomsmousetranscriptcluster.db_8.7.0.tar.gz
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hasNEWS: FALSE
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dependencyCount: 29
Package: clariomsrathttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
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Imports: methods, AnnotationDbi
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License: Artistic-2.0
MD5sum: 50399fde7380b015da941f36362a3f78
NeedsCompilation: no
Title: Affymetrix clariomsratht annotation data (chip
clariomsrathttranscriptcluster)
Description: Affymetrix clariomsratht annotation data (chip
clariomsrathttranscriptcluster) assembled using data from
public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
clariomsrathttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/clariomsrathttranscriptcluster.db_8.7.0.tar.gz
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hasNEWS: FALSE
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dependencyCount: 29
Package: clariomsrattranscriptcluster.db
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License: Artistic-2.0
MD5sum: 34d0c761a038f5f28f6b5db4b7e575a7
NeedsCompilation: no
Title: Affymetrix clariomsrat annotation data (chip
clariomsrattranscriptcluster)
Description: Affymetrix clariomsrat annotation data (chip
clariomsrattranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
clariomsrattranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/clariomsrattranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 29
Package: cMAP
Version: 1.15.1
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License: LGPL
MD5sum: dbf8df4d4540151936884e1c5d747bcf
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Title: A data package containing annotation data for cMAP
Description: Annotation data file for cMAP assembled using data from
public data repositories
Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James
W. MacDonald
Maintainer: Biocore Data Team <biocannotation@lists.fhcrc.org>
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hasNEWS: FALSE
hasINSTALL: FALSE
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dependsOnMe: pathRender
dependencyCount: 0
Package: cottoncdf
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License: LGPL
MD5sum: b9d2a4b43235c6e531b78cca006e84b2
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Title: cottoncdf
Description: A package containing an environment representing the
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biocViews: AnnotationData, AffymetrixChip, cdf, cotton,
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Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/cottoncdf_2.18.0.tar.gz
hasREADME: FALSE
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dependencyCount: 28
Package: cottonprobe
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Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 032fa94876685820d94526fd56dd0b65
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Title: Probe sequence data for microarrays of type cotton
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Cotton\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, cotton,
Gossypium_hirsutum, Gossypium_raimondii, Gossypium_arboretum,
Gossypium_barbadense
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/cottonprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
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dependencyCount: 28
Package: cyp450cdf
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Imports: AnnotationDbi
License: LGPL
MD5sum: 7923c4d24b7b654d0f59d52ed2258eb9
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Title: cyp450cdf
Description: A package containing an environment representing the
CYP450.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, cyp450, Homo_sapiens
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Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/cyp450cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 28
Package: DO.db
Version: 2.9
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.9.7)
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License: Artistic-2.0
MD5sum: 63dda6d46d2fe40c52a2e79260a7fb9d
NeedsCompilation: no
Title: A set of annotation maps describing the entire Disease Ontology
Description: A set of annotation maps describing the entire Disease
Ontology assembled using data from DO
biocViews: AnnotationData, FunctionalAnnotation
Author: Jiang Li
Maintainer: Jiang Li <riverlee2008@gmail.com>
source.ver: src/contrib/DO.db_2.9.tar.gz
vignettes: vignettes/DO.db/inst/doc/DO.db.pdf
vignetteTitles: DO.db Overview
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/DO.db/inst/doc/DO.db.R
importsMe: DOSE
suggestsMe: gwascat, simplifyEnrichment
dependencyCount: 28
Package: drosgenome1.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Dm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 44bc6356bc04226cba8cb2f3544c4688
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Title: Affymetrix Drosophila Genome Array annotation data (chip
drosgenome1)
Description: Affymetrix Drosophila Genome Array annotation data (chip
drosgenome1) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Drosophila_melanogaster, drosgenome1
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Drosophila melanogaster
manufacturer: Affymetrix
source.ver: src/contrib/drosgenome1.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: tigre
dependencyCount: 29
Package: drosgenome1cdf
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Imports: AnnotationDbi
License: LGPL
MD5sum: e12983f2148c10ef1faa50f810b6eee3
NeedsCompilation: no
Title: drosgenome1cdf
Description: A package containing an environment representing the
DrosGenome1.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, drosgenome1,
Drosophila_melanogaster
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/drosgenome1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: drosgenome1probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 1f12abdfeee65e8a6554f57507d86fb3
NeedsCompilation: no
Title: Probe sequence data for microarrays of type drosgenome1
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
DrosGenome1\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, drosgenome1,
Drosophila_melanogaster
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/drosgenome1probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: drosophila2.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Dm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 04a372eff398f79691216ed9fcc34bc8
NeedsCompilation: no
Title: Affymetrix Drosophila Genome 2.0 Array annotation data (chip
drosophila2)
Description: Affymetrix Drosophila Genome 2.0 Array annotation data
(chip drosophila2) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Drosophila_melanogaster, drosophila2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
manufacturer: Affymetrix
source.ver: src/contrib/drosophila2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: drosophila2cdf
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Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 3323e723c133ff2b6188e22bebf3e20a
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Title: drosophila2cdf
Description: A package containing an environment representing the
Drosophila_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, drosophila2,
Drosophila_melanogaster
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/drosophila2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: drosophila2probe
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Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: ba0251902ea0a5f0db61105bdcdc3530
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Title: Probe sequence data for microarrays of type drosophila2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Drosophila\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, drosophila2,
Drosophila_melanogaster
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/drosophila2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: Biostrings, XVector
dependencyCount: 28
Package: ecoli2.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3),
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1fe0877a59b63453df6667944818e66b
NeedsCompilation: no
Title: Affymetrix E. coli Genome 2.0 Array annotation data (chip
ecoli2)
Description: Affymetrix E. coli Genome 2.0 Array annotation data (chip
ecoli2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Escherichia_coli,
ecoli2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Escherichia coli
manufacturer: Affymetrix
source.ver: src/contrib/ecoli2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ecoli2cdf
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Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: b5cd1f05322ce494132ff649de9806c6
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Title: ecoli2cdf
Description: A package containing an environment representing the
E_coli_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, ecoli2,
Escherichia_coli
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ecoli2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecoli2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 061fcb782ee9da3aa5108881677a4531
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Title: Probe sequence data for microarrays of type ecoli2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
E\_coli\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ecoli2,
Escherichia_coli
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/ecoli2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecoliasv2cdf
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Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: d7771ca1648b26a6af5bfb7582c6c778
NeedsCompilation: no
Title: ecoliasv2cdf
Description: A package containing an environment representing the
Ecoli_ASv2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ecoliasv2,
Escherichia_coli
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/ecoliasv2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecoliasv2probe
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Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: b3e4332266184576279c3a478f286dc9
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ecoliasv2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
E\_coli\_Asv2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ecoliasv2,
Escherichia_coli
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/ecoliasv2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecolicdf
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Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 4e664c1ac41a8ab68ef22f8a889b916c
NeedsCompilation: no
Title: ecolicdf
Description: A package containing an environment representing the
Ecoli.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ecoli, Escherichia_coli
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ecolicdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: ecoliLeucine
suggestsMe: ecolitk
dependencyCount: 28
Package: ecoliK12.db0
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: dddc6e78b6cf92c925c11ed3b9b26693
NeedsCompilation: no
Title: Base Level Annotation databases for E coli K12 Strain
Description: Base annotation databases for E coli K12 Strain, intended
ONLY to be used by AnnotationDbi to produce regular annotation
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biocViews: db0, AnnotationData, Escherichia_coli
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
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organism: Escherichia coli
source.ver: src/contrib/ecoliK12.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecoliprobe
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Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
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MD5sum: 09586f9907bdbc43ba5ea4ce07c1f756
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ecoli
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
E\_coli\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ecoli,
Escherichia_coli
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/ecoliprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ecoliSakai.db0
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License: Artistic-2.0
MD5sum: d4534e53d3407bd063dd77ec57c7a9d6
NeedsCompilation: no
Title: Base Level Annotation databases for E coli Sakai Strain
Description: Base annotation databases for E coli Sakai Strain,
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annotation packages.
biocViews: db0, AnnotationData, Escherichia_coli
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
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organism: Escherichia coli
source.ver: src/contrib/ecoliSakai.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ENCODExplorerData
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Depends: R (>= 3.6),
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License: Artistic-2.0
MD5sum: c6d9b491548529db0739b79c98adacd7
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Title: A compilation of ENCODE metadata
Description: This package allows user to quickly access ENCODE project
files metadata and give access to helper functions to query the
ENCODE rest api, download ENCODE datasets and save the database
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biocViews: AnnotationHub, Homo_sapiens, Mus_musculus, CustomDBSchema
Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre],
Arnaud Droit [aut]
Maintainer: Eric Fournier <Fournier.Eric.2@crchudequebec.ulaval.ca>
VignetteBuilder: knitr
BugReports: https://github.com/ArnaudDroitLab/ENCODExplorerData/issues
source.ver: src/contrib/ENCODExplorerData_0.99.5.tar.gz
vignettes: vignettes/ENCODExplorerData/inst/doc/DataUpdate.html
vignetteTitles: Introduction to ENCODExplorerData
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ENCODExplorer
dependencyCount: 6
Package: EnsDb.Hsapiens.v75
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License: Artistic-2.0
MD5sum: 6c896475252903972bfc6c0eb0d8f334
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Title: Ensembl based annotation package
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biocViews: AnnotationData, EnsDb, Homo_sapiens
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source.ver: src/contrib/EnsDb.Hsapiens.v75_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ldblock, MetaboSignal, uncoverappLib
suggestsMe: AnnotationDbi, BiocOncoTK, biovizBase, ChIPpeakAnno, ggbio,
TFutils, TVTB, TxRegInfra
dependencyCount: 93
Package: EnsDb.Hsapiens.v79
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 16b5629805c07649b2aa501d34fcc588
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Homo_sapiens
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Homo_sapiens
source.ver: src/contrib/EnsDb.Hsapiens.v79_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ChIPpeakAnno, recount
dependencyCount: 93
Package: EnsDb.Hsapiens.v86
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 0c9e52512ff6dbbbdb754c4d41149939
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Homo_sapiens
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Homo_sapiens
source.ver: src/contrib/EnsDb.Hsapiens.v86_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: consensusDE, metagene, uncoverappLib
suggestsMe: BUSpaRse, ensembldb, weitrix, wiggleplotr
dependencyCount: 93
Package: EnsDb.Mmusculus.v75
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 081bf6f90ff77031b634b4fe32e00be8
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Mus_musculus
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Mus_musculus
source.ver: src/contrib/EnsDb.Mmusculus.v75_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 93
Package: EnsDb.Mmusculus.v79
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 28bbab743b0d2d550dbfa0bcd3274fad
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Mus_musculus
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Mus_musculus
source.ver: src/contrib/EnsDb.Mmusculus.v79_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: epivizrData
dependencyCount: 93
Package: EnsDb.Rnorvegicus.v75
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 40ff53b41aa6fad0d5bd15f9c6f3bad8
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Rattus_norvegicus
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Rattus_norvegicus
source.ver: src/contrib/EnsDb.Rnorvegicus.v75_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 93
Package: EnsDb.Rnorvegicus.v79
Version: 2.99.0
Depends: ensembldb
License: Artistic-2.0
MD5sum: 7d305bd0d1a073bd8c60063ae210a7a9
NeedsCompilation: no
Title: Ensembl based annotation package
Description: Exposes an annotation databases generated from Ensembl.
biocViews: AnnotationData, EnsDb, Rattus_norvegicus
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
organism: Rattus_norvegicus
source.ver: src/contrib/EnsDb.Rnorvegicus.v79_2.99.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 93
Package: EpiTxDb.Hs.hg38
Version: 0.99.7
Depends: R (>= 4.0), AnnotationHub, EpiTxDb
Suggests: BiocStyle, knitr, rmarkdown, testthat, Modstrings,
rtracklayer
License: Artistic-2.0
MD5sum: e30af95f285788a9777a8207a8ef73a9
NeedsCompilation: no
Title: Annotation package for EpiTxDb objects
Description: Exposes an annotation databases generated from several
sources by exposing these as EpiTxDb object. Generated for Homo
sapiens/hg38.
biocViews: AnnotationHub, AnnotationData, Organism, Homo_sapiens
Author: Felix G.M. Ernst [aut, cre]
(<https://orcid.org/0000-0001-5064-0928>)
Maintainer: Felix G.M. Ernst <felix.gm.ernst@outlook.com>
URL: https://github.com/FelixErnst/EpiTxDb.Hs.hg38
organism: Homo sapiens
VignetteBuilder: knitr
BugReports: https://github.com/FelixErnst/EpiTxDb.Hs.hg38/issues
source.ver: src/contrib/EpiTxDb.Hs.hg38_0.99.7.tar.gz
vignettes: vignettes/EpiTxDb.Hs.hg38/inst/doc/EpiTxDb.Hs.hg38.html
vignetteTitles: EpiTxDb.Hs.hg38
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/EpiTxDb.Hs.hg38/inst/doc/EpiTxDb.Hs.hg38.R
suggestsMe: EpiTxDb
dependencyCount: 130
Package: EpiTxDb.Mm.mm10
Version: 0.99.6
Depends: R (>= 4.0), AnnotationHub, EpiTxDb
Suggests: BiocStyle, knitr, rmarkdown, testthat
License: Artistic-2.0
MD5sum: 518e4967f7f038e3cbf2865b74dc4f1b
NeedsCompilation: no
Title: Annotation package for EpiTxDb objects
Description: Exposes an annotation databases generated from several
sources by exposing these as EpiTxDb object. Generated for Mus
musculus/mm10.
biocViews: AnnotationHub, AnnotationData, Organism, Mus_musculus
Author: Felix G.M. Ernst [aut, cre]
(<https://orcid.org/0000-0001-5064-0928>)
Maintainer: Felix G.M. Ernst <felix.gm.ernst@outlook.com>
URL: https://github.com/FelixErnst/EpiTxDb.Mm.mm10
organism: Homo sapiens
VignetteBuilder: knitr
BugReports: https://github.com/FelixErnst/EpiTxDb.Mm.mm10/issues
source.ver: src/contrib/EpiTxDb.Mm.mm10_0.99.6.tar.gz
vignettes: vignettes/EpiTxDb.Mm.mm10/inst/doc/EpiTxDb.Mm.mm10.html
vignetteTitles: EpiTxDb.Mm.mm10
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/EpiTxDb.Mm.mm10/inst/doc/EpiTxDb.Mm.mm10.R
dependencyCount: 130
Package: EpiTxDb.Sc.sacCer3
Version: 0.99.3
Depends: R (>= 4.0), AnnotationHub, EpiTxDb
Suggests: BiocStyle, knitr, rmarkdown, testthat
License: Artistic-2.0
MD5sum: 2a258608ab94330eac1e5ba2d2712506
NeedsCompilation: no
Title: Annotation package for EpiTxDb objects
Description: Exposes an annotation databases generated from several
sources by exposing these as EpiTxDb object. Generated for
Saccharomyces cerevisiae/sacCer3.
biocViews: AnnotationHub, AnnotationData, Organism,
Saccharomyces_cerevisiae
Author: Felix G.M. Ernst [aut, cre]
(<https://orcid.org/0000-0001-5064-0928>)
Maintainer: Felix G.M. Ernst <felix.gm.ernst@outlook.com>
URL: https://github.com/FelixErnst/EpiTxDb.Sc.sacCer3
organism: Saccharomyces cerevisiae
VignetteBuilder: knitr
BugReports: https://github.com/FelixErnst/EpiTxDb.Sc.sacCer3/issues
source.ver: src/contrib/EpiTxDb.Sc.sacCer3_0.99.3.tar.gz
vignettes:
vignettes/EpiTxDb.Sc.sacCer3/inst/doc/EpiTxDb.Sc.sacCer3.html
vignetteTitles: EpiTxDb.Sc.sacCer3
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/EpiTxDb.Sc.sacCer3/inst/doc/EpiTxDb.Sc.sacCer3.R
dependencyCount: 130
Package: EuPathDB
Version: 1.0.1
Depends: R (>= 3.5), Biobase, GenomicRanges, GenomeInfoDbData,
AnnotationHub (>= 2.13.8),
Imports: AnnotationHubData, Biostrings, BiocManager, utils
Suggests: dplyr, knitr, BiocStyle, rmarkdown, jsonlite
License: Artistic-2.0
MD5sum: 1451c3ab6c224d9a4cfbdf27dc5c2680
NeedsCompilation: no
Title: Provides access to pathogen annotation resources available on
EuPathDB databases
Description: Brings together annotation resources from the various
EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and
makes them available in R using the AnnotationHub framework.
biocViews: AnnotationData, AnnotationHub, DataImport, EuPathDB
Author: Keith Hughitt [aut, cre]
Maintainer: Keith Hughitt <keith.hughitt@gmail.com>
URL: https://github.com/khughitt/EuPathDB
VignetteBuilder: knitr
BugReports: https://github.com/khughitt/EuPathDB/issues
source.ver: src/contrib/EuPathDB_1.0.1.tar.gz
vignettes: vignettes/EuPathDB/inst/doc/EuPathDB.html
vignetteTitles: Accessing EuPathDB Resources using AnnotationHub
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/EuPathDB/inst/doc/EuPathDB.R
dependencyCount: 118
Package: FDb.FANTOM4.promoters.hg19
Version: 1.0.0
Depends: GenomicFeatures (>= 1.7.22), Biostrings
Imports: GenomicFeatures, AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
License: Artistic-2.0
MD5sum: 99a610eb895470e3d945acc5cfb3ebe6
NeedsCompilation: no
Title: Annotation package for FANTOM4 promoters identified from THP-1
cells
Description: FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs
quantified
biocViews: AnnotationData, Homo_sapiens
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
source.ver: src/contrib/FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: FDb.InfiniumMethylation.hg18
Version: 2.2.0
Depends: R (>= 2.10), GenomicFeatures (>= 1.7.22),
TxDb.Hsapiens.UCSC.hg18.knownGene, org.Hs.eg.db
Imports: GenomicFeatures, AnnotationDbi, Biostrings
License: Artistic-2.0
MD5sum: 95ceab50d0a7c3d417cee12fbe3defb3
NeedsCompilation: no
Title: Annotation package for Illumina Infinium DNA methylation probes
Description: Compiled HumanMethylation27 and HumanMethylation450
annotations
biocViews: AnnotationData, DNAMethylation, Homo_sapiens
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
source.ver: src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: methylumi
dependencyCount: 91
Package: FDb.InfiniumMethylation.hg19
Version: 2.2.0
Depends: R (>= 2.10), GenomicFeatures (>= 1.7.22),
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
Imports: GenomicFeatures, AnnotationDbi, Biostrings
Suggests: FDb.UCSC.snp135common.hg19
License: Artistic-2.0
MD5sum: b8b1abc599b9556b9fe9c6e824cb2697
NeedsCompilation: no
Title: Annotation package for Illumina Infinium DNA methylation probes
Description: Compiled HumanMethylation27 and HumanMethylation450
annotations
biocViews: AnnotationData, DNAMethylation, Homo_sapiens
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
source.ver: src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: methylumi
suggestsMe: BiocOncoTK, methyAnalysis, omicsPrint
dependencyCount: 91
Package: FDb.UCSC.snp135common.hg19
Version: 1.0.0
Depends: GenomicFeatures (>= 1.7.22)
Imports: GenomicFeatures, AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20111119
License: Artistic-2.0
MD5sum: 0cdca5fa595bb69464016ceb97635f78
NeedsCompilation: no
Title: UCSC common SNPs track for dbSNP build 135
Description: makeFeatureDbFromUCSC cannot cope with this track, hence a
package
biocViews: AnnotationData, Homo_sapiens
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
source.ver: src/contrib/FDb.UCSC.snp135common.hg19_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: FDb.InfiniumMethylation.hg19
dependencyCount: 89
Package: FDb.UCSC.snp137common.hg19
Version: 1.0.0
Depends: GenomicFeatures (>= 1.7.22)
Imports: GenomicFeatures, AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19
License: Artistic-2.0
MD5sum: dac83f2d2f9ea9f033e50beac5c44838
NeedsCompilation: no
Title: UCSC common SNPs track for dbSNP build 137
Description: makeFeatureDbFromUCSC cannot cope with this track, hence a
package
biocViews: AnnotationData, Homo_sapiens
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
source.ver: src/contrib/FDb.UCSC.snp137common.hg19_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: FDb.UCSC.tRNAs
Version: 1.0.1
Depends: GenomicFeatures (>= 1.9.39)
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 77bfdadd4d9f995a72b001e4e41792fa
NeedsCompilation: no
Title: Annotation package for FeatureDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as FeatureDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: Marc Carlson
Maintainer: Biocore Data Team <bioconductor@r-project.org>
organism: Homo sapiens
source.ver: src/contrib/FDb.UCSC.tRNAs_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomicFeatures, OrganismDbi
dependencyCount: 89
Package: fitCons.UCSC.hg19
Version: 3.7.1
Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
License: Artistic-2.0
MD5sum: 53d954890ec9b91084664a10161ce391
NeedsCompilation: no
Title: UCSC fitCons fitness consequences scores for hg19
Description: Store UCSC fitCons fitness consequences scores version
1.01 for the human genome (hg19).
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/fitCons.UCSC.hg19_3.7.1.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: fly.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 532b337611ef6cb9d6ca9cd6bc1c5a8d
NeedsCompilation: no
Title: Base Level Annotation databases for fly
Description: Base annotation databases for fly, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Drosophila_melanogaster
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver: src/contrib/fly.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: geneplast.data
Version: 0.99.2
Depends: R (>= 4.0)
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 5fc5272191d3468b1e3c140cb9416eee
NeedsCompilation: no
Title: Input data for the geneplast package via AnnotationHub
Description: The package geneplast.data provides an interface for
obtaining input data used in the analyses pipelines from
geneplast package. Objects containing species, phylogenetic
trees, and orthology information of eukaryotes from different
orthologous databases are provided.
biocViews: AnnotationData, AnnotationHub
Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo
Dalmolin [aut], Mauro Castro [aut]
Maintainer: Leonardo Campos <leofields@gmail.com>
VignetteBuilder: knitr
source.ver: src/contrib/geneplast.data_0.99.2.tar.gz
vignettes: vignettes/geneplast.data/inst/doc/geneplastdata.html
vignetteTitles: Supporting data for geneplast evolutionary analyses
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/geneplast.data/inst/doc/geneplastdata.R
dependencyCount: 0
Package: geneplast.data.string.v91
Version: 0.99.6
Depends: R (>= 3.5)
License: Artistic-2.0
MD5sum: 86433f8489d9228c5ed73e2b75a55398
NeedsCompilation: no
Title: Input data for the geneplast package
Description: The package geneplast.data.string.v91 contains input data
used in the analysis pipelines available in the geneplast
package.
biocViews: AnnotationData, FunctionalAnnotation
Author: Sheyla Trefflich, Rodrigo Damolin, Mauro Castro.
Maintainer: Sheyla Trefflich <sheylatrefflich@gmail.com>, Mauro Castro
<mauro.a.castro@gmail.com>
source.ver: src/contrib/geneplast.data.string.v91_0.99.6.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: geneplast
dependencyCount: 0
Package: GenomeInfoDbData
Version: 1.2.4
Depends: R (>= 3.5.0)
License: Artistic-2.0
MD5sum: b5374ca4c7ab353baea9dc2f39a96ebf
NeedsCompilation: no
Title: Species and taxonomy ID look up tables used by GenomeInfoDb
Description: Files for mapping between NCBI taxonomy ID and species.
Used by functions in the GenomeInfoDb package.
biocViews: AnnotationData, Organism
Author: Bioconductor Core Team
Maintainer: Bioconductor Maintainer <maintainer@bioconductor.org>
source.ver: src/contrib/GenomeInfoDbData_1.2.4.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: EuPathDB
importsMe: countsimQC, GenomeInfoDb, multiHiCcompare, Ularcirc
suggestsMe: AnnotationHubData
dependencyCount: 0
Package: genomewidesnp5Crlmm
Version: 1.0.6
Imports: utils
License: Artistic-2.0
MD5sum: cc24140cd17758b8e09f4fe6c931526a
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for fast genotyping Affymetrix
GenomeWideSnp_5 arrays using the 'crlmm' package. Annotation
build is hg19.
Author: Benilton S Carvalho
Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf
<rscharpf@jhsph.edu>
source.ver: src/contrib/genomewidesnp5Crlmm_1.0.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: oligoClasses
dependencyCount: 1
Package: genomewidesnp6Crlmm
Version: 1.0.7
Imports: utils
License: Artistic-2.0
MD5sum: 13dd5aef3d814524896f2f3013beb78b
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for fast genotyping Affymetrix
GenomeWideSnp_6 arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Benilton S Carvalho
Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf
<rscharpf@jhsph.edu>
source.ver: src/contrib/genomewidesnp6Crlmm_1.0.7.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: crlmm, oligoClasses
dependencyCount: 1
Package: GenomicState
Version: 0.99.9
Depends: AnnotationHub
Imports: GenomicFeatures, GenomeInfoDb, rtracklayer, bumphunter,
derfinder, AnnotationDbi, IRanges, org.Hs.eg.db, utils, methods
Suggests: knitr, rmarkdown, BiocStyle, knitcitations, sessioninfo,
testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData,
RefManageR, GenomicRanges
License: Artistic-2.0
MD5sum: 43d1a02c4653471bb9dd291ff0c10c9f
NeedsCompilation: no
Title: Build and access GenomicState objects for use with derfinder
tools from sources like Gencode
Description: This package contains functions for building GenomicState
objects from different annotation sources such as Gencode. It
also provides access to these files at JHPCE.
biocViews: Homo_sapiens, TxDb, AnnotationHub, AnnotationData
Author: Leonardo Collado-Torres [aut, cre]
(<https://orcid.org/0000-0003-2140-308X>)
Maintainer: Leonardo Collado-Torres <lcolladotor@gmail.com>
URL: https://github.com/LieberInstitute/GenomicState
VignetteBuilder: knitr
BugReports: https://github.com/LieberInstitute/GenomicState/issues
source.ver: src/contrib/GenomicState_0.99.9.tar.gz
vignettes: vignettes/GenomicState/inst/doc/GenomicState.html
vignetteTitles: Introduction to GenomicState
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/GenomicState/inst/doc/GenomicState.R
importsMe: brainflowprobes, recountWorkflow
suggestsMe: dasper
dependencyCount: 164
Package: GGHumanMethCancerPanelv1.db
Version: 1.4.1
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.9), org.Hs.eg.db
(>= 2.4.5)
Imports: methods, AnnotationDbi, AnnotationForge
Suggests: annotate
License: Artistic-2.0
MD5sum: e8f4a37182b175fb33dd54f8093e6f52
NeedsCompilation: no
Title: Illumina Golden Gate Human Methylation Cancer Panel Version 1
annotation data (chip GGHumanMethCancerPanelv1)
Description: Illumina Golden Gate Human Methylation Cancer Panel
Version 1 annotation data (chip GGHumanMethCancerPanelv1)
assembled using data from public repositories
biocViews: AnnotationData, IlluminaChip, Homo_sapiens,
GGHumanMethCancerPanelv1
Author: Sean Davis <sdavis2@mail.nih.gov>
Maintainer: Sean Davis <sdavis2@mail.nih.gov>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/GGHumanMethCancerPanelv1.db_1.4.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 33
Package: GO.db
Version: 3.12.1
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI
License: Artistic-2.0
MD5sum: 4d6bbf437da862bb8ce3b3737eb12d23
NeedsCompilation: no
Title: A set of annotation maps describing the entire Gene Ontology
Description: A set of annotation maps describing the entire Gene
Ontology assembled using data from GO
biocViews: AnnotationData, FunctionalAnnotation
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/GO.db_3.12.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: annaffy, ExpressionView, geneXtendeR, goProfiles, GOSim,
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Mus.musculus, Rattus.norvegicus, davidTiling, RnaSeqGeneEdgeRQL
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Title: Codelink UniSet Human I Bioarray (~10 000 human genes)
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Package: hapmap370k
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Title: Affymetrix Human Genome Focus Array annotation data (chip
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biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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Title: hgfocuscdf
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biocViews: AnnotationData, AffymetrixChip, cdf, hgfocus, Homo_sapiens
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Title: Probe sequence data for microarrays of type hgfocus
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biocViews: AnnotationData, AffymetrixChip, probe, hgfocus, Homo_sapiens
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Title: Affymetrix Human Genome U133 Set annotation data (chip hgu133a)
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biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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Title: Affymetrix Human Genome U133A 2.0 Array annotation data (chip
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Description: Affymetrix Human Genome U133A 2.0 Array annotation data
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biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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biocViews: AnnotationData, AffymetrixChip, cdf, hgu133a2, Homo_sapiens
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biocViews: AnnotationData, AffymetrixChip, hgu133a2, Homo_sapiens, FRMA
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Title: Probe sequence data for microarrays of type hgu133a2
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biocViews: AnnotationData, AffymetrixChip, probe, hgu133a2,
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Title: Probe sequence data for microarrays of type hgu133a
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biocViews: AnnotationData, AffymetrixChip, cdf, hgu133atag,
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Title: Probe sequence data for microarrays of type hgu133atag
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AnnotationForge version 1.11.21. The probe sequence data was
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biocViews: AnnotationData, AffymetrixChip, probe, hgu133atag,
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Title: Affymetrix Human Genome U133 Set annotation data (chip hgu133b)
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biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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Title: Probe sequence data for microarrays of type hgu133b
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Title: Affymetrix Human Genome U133 Plus 2.0 Array annotation data
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Description: Affymetrix Human Genome U133 Plus 2.0 Array annotation
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biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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Maintainer: Bioconductor Package Maintainer
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dependencyCount: 29
Package: hgu133plus2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 284fef2f0b777d7b53451538ddd53de3
NeedsCompilation: no
Title: hgu133plus2cdf
Description: A package containing an environment representing the
HG-U133_Plus_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu133plus2,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu133plus2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ELBOW, frmaTools, prebs, qcmetrics, PREDAsampledata
dependencyCount: 28
Package: hgu133plus2frmavecs
Version: 1.5.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: a4781cbcccc1ee17dfd16259f1c7bebc
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type hgu133plus2
Description: This package was created by frmaTools version 1.19.3 and
hgu133ahsentrezgcdf version 19.0.0.
biocViews: AnnotationData, AffymetrixChip, hgu133plus2, Homo_sapiens,
FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
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Maintainer: Matthew N. McCall <mccallm@gmail.com>
source.ver: src/contrib/hgu133plus2frmavecs_1.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: DeSousa2013
dependencyCount: 0
Package: hgu133plus2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7a244787a0269bc72732ac3d830f34dd
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu133plus2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U133\_Plus\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu133plus2,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu133plus2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ELBOW, frmaTools, prebs
dependencyCount: 28
Package: hgu219.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a4a0fd2ac170a75d8b17618615fcd7a0
NeedsCompilation: no
Title: Affymetrix Human Genome 219 Plate annotation data (chip hgu219)
Description: Affymetrix Human Genome 219 Plate annotation data (chip
hgu219) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu219
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu219.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgu219cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 157a4280a9de960902260ab18f678949
NeedsCompilation: no
Title: hgu219cdf
Description: A package containing an environment representing the
HG-U219.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu219, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu219cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu219probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: c5bb2f7b2e0f8fa89e6a30befaee6497
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu219
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U219\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu219, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu219probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e509dd32292601d81af8aa61ec782ca7
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95a)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: GSVAdata
dependencyCount: 29
Package: hgu95acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: afc999d77b1532154d45911ad15a5897
NeedsCompilation: no
Title: hgu95acdf
Description: A package containing an environment representing the
HG_U95A.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95a, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: altcdfenvs
dependencyCount: 28
Package: hgu95aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 67d94ecdc1889acc19dafd19d26700a2
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG\_U95A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95a, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95av2
Version: 2.2.0
Depends: R (>= 2.4.0)
License: The Artistic License, Version 2.0
MD5sum: b92585c0f43e91bd1abd234b9465a6a7
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)
Description: Affymetrix Human Genome U95 Set annotation data (hgu95av2)
assembled using data from public data repositories
biocViews: AnnotationData, Homo_sapiens, AffymetrixChip, hgu95av2
Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James
W. MacDonald
Maintainer: Biocore Data Team <biocannotation@lists.fhcrc.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95av2_2.2.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: AffyExpress, tkWidgets, estrogen
dependencyCount: 0
Package: hgu95av2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a0ee1ba7f115a1504ca89619a0bc56dd
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95av2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hgu95av2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95av2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: a4Base, a4Classif, a4Preproc, affycoretools, annaffy,
annotate, AnnotationDbi, AnnotationForge, BiocCaseStudies,
biocGraph, BioNet, Category, categoryCompare, ChromHeatMap,
clipper, eisa, EnrichmentBrowser, esetVis, ExpressionView,
genefilter, geneplotter, GenomicRanges, GOstats, graphite,
GSAR, GSEABase, GSEAlm, GSRI, Heatplus, idiogram,
interactiveDisplay, macat, mdgsa, MLInterfaces, npGSEA,
pathRender, ReportingTools, RGalaxy, SNAGEE,
SummarizedExperiment, topGO, SNAGEEdata, metaMA, SourceSet
dependencyCount: 29
Package: hgu95av2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 026bae2f76433593f75ca6c79bc9a9d0
NeedsCompilation: no
Title: hgu95av2cdf
Description: A package containing an environment representing the
HG_U95Av2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95av2, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95av2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: affyContam, AffyExpress, bgx, BiocCaseStudies, Biostrings,
gcrma, maskBAD, mimager, vsn, affydata, estrogen, RobLoxBioC
dependencyCount: 28
Package: hgu95av2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: d3efb56f7e7a264b633fac787a5a2b95
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95av2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG\_U95Av2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95av2,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95av2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: BiocCaseStudies, Biostrings, BSgenome, gcrma,
GenomicRanges, maskBAD
dependencyCount: 28
Package: hgu95b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c532e54fd7087f1b1cce0c1e61ae1c16
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95b)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95b) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgu95bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: e6e56b7a107bb2df25b3c25a8191385d
NeedsCompilation: no
Title: hgu95bcdf
Description: A package containing an environment representing the
HG_U95B.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95b, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 60dcb57fd402dc24d53ef9390c893cfc
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U95B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95b, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95c.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 273595199acfafe4c50182916c9893ca
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95c)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95c) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95c
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95c.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgu95ccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 976151eac05c320aec7a24397a6b5806
NeedsCompilation: no
Title: hgu95ccdf
Description: A package containing an environment representing the
HG_U95C.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95c, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95ccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95cprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 3fe935a52c70105dc7a214174c946455
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95c
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U95C\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95c, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95cprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95d.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e56da8022bb88c1cd495ea516eae6613
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95d)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95d) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95d
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95d.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgu95dcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 36e11ff001b1bec3f34ba7c93132ad6f
NeedsCompilation: no
Title: hgu95dcdf
Description: A package containing an environment representing the
HG_U95D.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95d, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95dcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95dprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 165ce5029f49fc515b9ee0e6a6a29cb5
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95d
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U95D\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95d, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95dprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95e.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 18bbf38f91172616a7f78e63e85630e5
NeedsCompilation: no
Title: Affymetrix Human Genome U95 Set annotation data (chip hgu95e)
Description: Affymetrix Human Genome U95 Set annotation data (chip
hgu95e) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95e
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hgu95e.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgu95ecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: fa27cfff62a38fc51640d797bd628105
NeedsCompilation: no
Title: hgu95ecdf
Description: A package containing an environment representing the
HG_U95E.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hgu95e, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95ecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hgu95eprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 9e5407ab80c5bbb4065484be0b9c6191
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hgu95e
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HG-U95E\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hgu95e, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hgu95eprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hguatlas13k.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ab9ffe1a1de44c0f938129f193e7fb63
NeedsCompilation: no
Title: Clontech BD Atlas Long Oligos Human 13K annotation data (chip
hguatlas13k)
Description: Clontech BD Atlas Long Oligos Human 13K annotation data
(chip hguatlas13k) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, ClontechChip, Homo_sapiens,
hguatlas13k
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Clontech
source.ver: src/contrib/hguatlas13k.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgubeta7.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1b8b065f95d2089985f59f22dcabc824
NeedsCompilation: no
Title: Unknown annotation data (chip hgubeta7)
Description: Unknown annotation data (chip hgubeta7) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, CustomArray, Homo_sapiens
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Unknown
source.ver: src/contrib/hgubeta7.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hguDKFZ31.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: fa3ba493cebdac4253dea8fe5d58452b
NeedsCompilation: no
Title: Unknown annotation data (chip hguDKFZ31)
Description: Unknown annotation data (chip hguDKFZ31) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, CustomArray, Homo_sapiens
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Unknown
source.ver: src/contrib/hguDKFZ31.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgug4100a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: b7856928278a77d71f963410ea4f2376
NeedsCompilation: no
Title: Agilent Human 1 cDNA Microarray Kit annotation data (chip
hgug4100a)
Description: Agilent Human 1 cDNA Microarray Kit annotation data (chip
hgug4100a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4100a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/hgug4100a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgug4101a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e4731217efbffd05d3ee7eec68ce0aa0
NeedsCompilation: no
Title: Agilent Human 2 cDNA Microarry Kit annotation data (chip
hgug4101a)
Description: Agilent Human 2 cDNA Microarry Kit annotation data (chip
hgug4101a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4101a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/hgug4101a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgug4110b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a9edcdbc121f22d4dec335a64598ff0e
NeedsCompilation: no
Title: Agilent Human 1A (V2) annotation data (chip hgug4110b)
Description: Agilent Human 1A (V2) annotation data (chip hgug4110b)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4110b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/hgug4110b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgug4111a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a5f2c3b463915fa1ab0ca21e6b0f5840
NeedsCompilation: no
Title: Agilent Human 1B annotation data (chip hgug4111a)
Description: Agilent Human 1B annotation data (chip hgug4111a)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4111a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/hgug4111a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hgug4112a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 67ecf8c887e2ebe1941cc51d0f5fb468
NeedsCompilation: no
Title: Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
Description: Agilent "Human Genome, Whole" annotation data (chip
hgug4112a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4112a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/hgug4112a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: RmiR.Hs.miRNA, RmiR.hsa
dependencyCount: 29
Package: hgug4845a.db
Version: 0.0.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.17.27),
org.Hs.eg.db (>= 2.7.1)
Imports: methods, AnnotationDbi
Suggests: annotate
License: Artistic-2.0
MD5sum: 46133d7bcb6d8c24c026304e8ddd150d
NeedsCompilation: no
Title: agilent AMADID 026652 annotation data (chip hgug4845a)
Description: agilent AMADID 026652 annotation data (chip hgug4845a)
assembled using data from public repositories
biocViews: AnnotationData, agilentChip, Homo_sapiens, hgug4845a
Author: Ralph Scherer
Maintainer: Ralph Scherer <scherer.ralph@mh-hannover.de>
organism: Homo sapiens
manufacturer: agilent
source.ver: src/contrib/hgug4845a.db_0.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hguqiagenv3.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 91ebb82e773ff799befdb8921b38e90e
NeedsCompilation: no
Title: Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3)
Description: Qiagen Qiagen V3.0 oligo set annotation data (chip
hguqiagenv3) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, QiagenChip, Homo_sapiens,
hguqiagenv3
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Qiagen
source.ver: src/contrib/hguqiagenv3.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hi16cod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Hs.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: abdc77937e8d37fa5468691376ceb6a5
NeedsCompilation: no
Title: Codelink Human Inflammation 16 Bioarray annotation data (chip
hi16cod)
Description: Codelink Human Inflammation 16 Bioarray annotation data
(chip hi16cod) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, hi16cod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Homo sapiens
manufacturer: Codelink
source.ver: src/contrib/hi16cod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hivprtplus2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 143d9c2f5f328786bae7bb8dc4daf261
NeedsCompilation: no
Title: hivprtplus2cdf
Description: A package containing an environment representing the HIV
PRTPlus 2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hivprtplus2,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hivprtplus2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hom.At.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: f2554df43910ac8661c40bf10c46ff50
NeedsCompilation: no
Title: Homology information for Arabidopsis thaliana from Inparanoid
Description: Homology information for Arabidopsis thaliana from
Inparanoid assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Arabidopsis_thaliana
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
PackageStatus: Deprecated
source.ver: src/contrib/hom.At.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hom.Ce.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 0581c36654a322a507f4212de74a8790
NeedsCompilation: no
Title: Homology information for Caenorhabditis elegans from Inparanoid
Description: Homology information for Caenorhabditis elegans from
Inparanoid assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Caenorhabditis_elegans
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis_elegans
PackageStatus: Deprecated
source.ver: src/contrib/hom.Ce.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hom.Dm.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: b5523acc4327a3f2d39404b03212dcca
NeedsCompilation: no
Title: Homology information for Drosophila melanogaster from Inparanoid
Description: Homology information for Drosophila melanogaster from
Inparanoid assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Drosophila_melanogaster
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
PackageStatus: Deprecated
source.ver: src/contrib/hom.Dm.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: RpsiXML
dependencyCount: 28
Package: hom.Dr.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 55eba7f2657bdd300453cdeba7d89d63
NeedsCompilation: no
Title: Homology information for Danio rerio from Inparanoid
Description: Homology information for Danio rerio from Inparanoid
assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Danio_rerio
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
PackageStatus: Deprecated
source.ver: src/contrib/hom.Dr.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hom.Hs.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: fdd8bb7d50bd44801cb9b6d193bf5800
NeedsCompilation: no
Title: Homology information for Homo Sapiens from Inparanoid
Description: Homology information for Homo Sapiens from Inparanoid
assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Homo_sapiens
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
PackageStatus: Deprecated
source.ver: src/contrib/hom.Hs.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotate, AnnotationDbi, AnnotationForge, AnnotationFuncs
dependencyCount: 28
Package: hom.Mm.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: b76d9c5b16bfc8fae4327761071b3542
NeedsCompilation: no
Title: Homology information for Mus musculus from Inparanoid
Description: Homology information for Mus musculus from Inparanoid
assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Mus_musculus
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
PackageStatus: Deprecated
source.ver: src/contrib/hom.Mm.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: RpsiXML
dependencyCount: 28
Package: hom.Rn.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 4f339877f81157d54aa30edd1882c187
NeedsCompilation: no
Title: Homology information for Rattus norvegicus from Inparanoid
Description: Homology information for Rattus norvegicus from Inparanoid
assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Rattus_norvegicus
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
PackageStatus: Deprecated
source.ver: src/contrib/hom.Rn.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: RpsiXML
dependencyCount: 28
Package: hom.Sc.inp.db
Version: 3.1.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 2f2279715ca2125e88e342dca2c68b31
NeedsCompilation: no
Title: Homology information for Saccharomyces cerevisiae from
Inparanoid
Description: Homology information for Saccharomyces cerevisiae from
Inparanoid assembled using data from public repositories
biocViews: InparanoidDb, AnnotationData, Saccharomyces_cerevisiae
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
PackageStatus: Deprecated
source.ver: src/contrib/hom.Sc.inp.db_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Homo.sapiens
Version: 1.3.1
Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 653b60cfcdaefd171729115cd629b585
NeedsCompilation: no
Title: Annotation package for the Homo.sapiens object
Description: Contains the Homo.sapiens object to access data from
several related annotation packages.
biocViews: AnnotationData, Genetics, OrganismDb, Homo_sapiens
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/Homo.sapiens_1.3.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: chimera, compartmap, erma, GGtools, gpart, gQTLstats,
GSReg, mCSEA, yriMulti, annotation, liftOver
importsMe: appreci8R, biscuiteer, uncoverappLib
suggestsMe: AnnotationForge, deco, epivizrChart, GenomicFiles, ggbio,
GOfuncR, gQTLBase, methylumi, NanoMethViz, OrganismDbi,
RTCGAToolbox, scTensor, geuvStore2
dependencyCount: 96
Package: hpAnnot
Version: 1.0.1
Depends: R (>= 3.5)
Suggests: BiocStyle, knitr, rmarkdown
License: GPL-2
MD5sum: 7a1254a1d184b1a065f5f24d266cebdc
NeedsCompilation: no
Title: Anotation package for Hipathia package
Description: Package containing example and annotation data for
Hipathia package. Hipathia is a method for the computation of
signal transduction along signaling pathways from
transcriptomic data. The method is based on an iterative
algorithm which is able to compute the signal intensity passing
through the nodes of a network by taking into account the level
of expression of each gene and the intensity of the signal
arriving to it. It also provides a new approach to functional
analysis allowing to compute the signal arriving to the
functions annotated to each pathway. Hipathia depends on this
package to be functional.
biocViews: FunctionalAnnotation, PackageType, CustomDBSchema
Author: Marta R. Hidalgo [aut, cre], José Carbonell-Caballero [ctb],
Francisco Salavert [ctb], Alicia Amadoz [ctb], Çankut Cubuk
[ctb], Joaquin Dopazo [ctb]
Maintainer: Marta R. Hidalgo <marta.hidalgo@outlook.es>
VignetteBuilder: knitr
source.ver: src/contrib/hpAnnot_1.0.1.tar.gz
vignettes: vignettes/hpAnnot/inst/doc/hpAnnot-vignette.pdf
vignetteTitles: hpAnnot
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/hpAnnot/inst/doc/hpAnnot-vignette.R
dependencyCount: 0
Package: hs25kresogen.db
Version: 2.5.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.13.19),
org.Hs.eg.db (>= 2.5.0)
Imports: methods, AnnotationDbi
Suggests: annotate
License: Artistic-2.0
MD5sum: a3800d072ce0e5f6f5d8299538b99cca
NeedsCompilation: no
Title: RNG_MRC Human Pangenomic 25k Set annotation data (chip
hs25kresogen)
Description: RNG_MRC Human Pangenomic 25k Set annotation data (chip
hs25kresogen) assembled using data from public repositories
biocViews: AnnotationData, RNG_MRCChip, Homo_sapiens, hs25kresogen
Author: AltraBio
Maintainer: Simon de Bernard <simon.debernard@altrabio.com>
organism: Homo sapiens
manufacturer: RNG_MRC
source.ver: src/contrib/hs25kresogen.db_2.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: Hs6UG171.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7aaf8a2441941f70247275c93735ed3b
NeedsCompilation: no
Title: A package containing metadata for Hs6UG171 arrays
Description: A package containing metadata for Hs6UG171 arrays
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens, Hs6UG171
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: CUSTOM
source.ver: src/contrib/Hs6UG171.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: HsAgilentDesign026652.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: dcd2c748bf9d7c002611cd5cf2ff38c0
NeedsCompilation: no
Title: Agilent Chips that use Agilent design number 026652 annotation
data (chip HsAgilentDesign026652)
Description: Agilent Chips that use Agilent design number 026652
annotation data (chip HsAgilentDesign026652) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens,
HsAgilentDesign026652
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Agilent
source.ver: src/contrib/HsAgilentDesign026652.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: Hspec
Version: 0.99.1
Depends: R (>= 2.10), utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 0ade3e3147c8f0086e9be2312cccdfeb
NeedsCompilation: no
Title: Hspec
Description: A package containing an environment representing the
HGU133Plus2_Hs_Hspec.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, Hspec, Homo_sapiens
Author: Sara Erika Bellomo , Claudio Isella, Enzo Medico
Maintainer: Bellomo S.E. <saraerika.bellomo@ircc.it>
source.ver: src/contrib/Hspec_0.99.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hspeccdf
Version: 0.99.1
Depends: R (>= 2.10), utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 89f81adf91094710558ce6aec79fc7fd
NeedsCompilation: no
Title: hspeccdf
Description: A package containing an environment representing the
HGU133Plus2_Hs_Hspec.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, Hspec, Homo_sapiens
Author: Sara Erika Bellomo , Claudio Isella, Enzo Medico
Maintainer: Bellomo S.E. <saraerika.bellomo@ircc.it>
source.ver: src/contrib/hspeccdf_0.99.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hta20probeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: d2123b0ecd324626b06a920f947a114e
NeedsCompilation: no
Title: Affymetrix hta20 annotation data (chip hta20probeset)
Description: Affymetrix hta20 annotation data (chip hta20probeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hta20probeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hta20probeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hta20transcriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c7cdfe80bf2f7aa86fa3caff6da0c34c
NeedsCompilation: no
Title: Affymetrix hta20 annotation data (chip hta20transcriptcluster)
Description: Affymetrix hta20 annotation data (chip
hta20transcriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hta20transcriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hta20transcriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hthgu133a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: df8c18dcb8d0adfb6f7a9306cbe9b162
NeedsCompilation: no
Title: Affymetrix HT Human Genome U133 Array Plate Set annotation data
(chip hthgu133a)
Description: Affymetrix HT Human Genome U133 Array Plate Set annotation
data (chip hthgu133a) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hthgu133a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hthgu133a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hthgu133acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: b92e543867f1f0c08bfa9299e123d608
NeedsCompilation: no
Title: hthgu133acdf
Description: A package containing an environment representing the
HT_HG-U133A.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133a, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hthgu133afrmavecs
Version: 1.3.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: be3f3d67a94dca3b080c184fba5ff6d8
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type hthgu133a
Description: This package was created by frmaTools version 1.19.3 and
hgu133ahsentrezgcdf version 19.0.0.
biocViews: AnnotationData, AffymetrixChip, hthgu133a, Homo_sapiens,
FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
<rafa@jhu.edu>
Maintainer: Matthew N. McCall <mccallm@gmail.com>
source.ver: src/contrib/hthgu133afrmavecs_1.3.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: hthgu133aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: cdc17ea670719f055ee75bea1415c754
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hthgu133a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_HG-U133A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hthgu133a,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hthgu133b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a6dfceb47a306ec5365d8376dbb036c7
NeedsCompilation: no
Title: Affymetrix HT Human Genome U133 Array Plate Set annotation data
(chip hthgu133b)
Description: Affymetrix HT Human Genome U133 Array Plate Set annotation
data (chip hthgu133b) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hthgu133b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hthgu133b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hthgu133bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 935ae53fb168d9c7890d71020ef4c366
NeedsCompilation: no
Title: hthgu133bcdf
Description: A package containing an environment representing the
HT_HG-U133B.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133b, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hthgu133bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 8a2e306638a81fdec3b10a014c04c6b9
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hthgu133b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_HG-U133B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hthgu133b,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hthgu133pluspmcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 56d15101d59decac7811caa15b349a9c
NeedsCompilation: no
Title: hthgu133pluspmcdf
Description: A package containing an environment representing the
HT_HG-U133_Plus_PM.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133pluspm,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133pluspmcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hthgu133pluspmprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 74713e822a689007892d0eb92dbd456b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hthgu133pluspm
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_HG-U133\_Plus\_PM\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hthgu133pluspm,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hthgu133pluspmprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: aef7a3c3af7d2624ee6fc6f2d22472e2
NeedsCompilation: no
Title: htmg430acdf
Description: A package containing an environment representing the
HT_MG-430A.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, htmg430a, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: e50cc49b8887b6ef8ee1152ec12d5010
NeedsCompilation: no
Title: Probe sequence data for microarrays of type htmg430a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_MG-430A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, htmg430a,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 53cc1408504a5f07b5655aa46b969157
NeedsCompilation: no
Title: htmg430bcdf
Description: A package containing an environment representing the
HT_MG-430B.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, htmg430b, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: f0e3eb56925d786762dee0c2dc82b530
NeedsCompilation: no
Title: Probe sequence data for microarrays of type htmg430b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_MG-430B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, htmg430b,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430pmcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 016a54b47adbbed7db989787646a0084
NeedsCompilation: no
Title: htmg430pmcdf
Description: A package containing an environment representing the
HT_MG-430_PM.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, htmg430pm, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430pmcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htmg430pmprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: f0e053fcc0ca4b5f8c539fc0a3fcb076
NeedsCompilation: no
Title: Probe sequence data for microarrays of type htmg430pm
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_MG-430\_PM\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, htmg430pm,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htmg430pmprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htrat230pmcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: c6683d16e8aacccd326f7a7eebb79b98
NeedsCompilation: no
Title: htrat230pmcdf
Description: A package containing an environment representing the
HT_Rat230_PM.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, htrat230pm,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htrat230pmcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htrat230pmprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: e4deeca2dc406367ac4a347e370267cf
NeedsCompilation: no
Title: Probe sequence data for microarrays of type htrat230pm
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_Rat230\_PM\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, htrat230pm,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htrat230pmprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htratfocuscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 04b4952f7d8b607a7eb0f779c08c57dc
NeedsCompilation: no
Title: htratfocuscdf
Description: A package containing an environment representing the
HT_Rat-Focus.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, htratfocus,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htratfocuscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: htratfocusprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 26a0963d8aff314a4a1f2c47e9147a8a
NeedsCompilation: no
Title: Probe sequence data for microarrays of type htratfocus
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HT\_Rat-Focus\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, htratfocus,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/htratfocusprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksuba.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: eef6de6790e904d0b63a3ec8faba2962
NeedsCompilation: no
Title: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksuba)
Description: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksuba) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hu35ksuba
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hu35ksuba.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hu35ksubacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: c8b82c4755eb62818ca0dbf22de5d25e
NeedsCompilation: no
Title: hu35ksubacdf
Description: A package containing an environment representing the
Hu35KsubA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksuba, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubaprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 49bd19ec3b6404211f2e410e473fa644
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hu35ksuba
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Hu35KsubA\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hu35ksuba,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubaprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubb.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: b49fc7bda2b0879d1be1ac0061a7ea98
NeedsCompilation: no
Title: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubb)
Description: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubb) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hu35ksubb
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hu35ksubb.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hu35ksubbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: d873b6c521e926b331f799baf10a4e13
NeedsCompilation: no
Title: hu35ksubbcdf
Description: A package containing an environment representing the
Hu35KsubB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubb, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubbprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 0a63051d0faf38a56f17d5865cbed9b1
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hu35ksubb
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Hu35KsubB\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubb,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubbprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubc.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: f3c215dc2ddbab7ddcdbf015495f87b3
NeedsCompilation: no
Title: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubc)
Description: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubc) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hu35ksubc
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hu35ksubc.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hu35ksubccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: de96e69680c5f8747c99d170272d7c3c
NeedsCompilation: no
Title: hu35ksubccdf
Description: A package containing an environment representing the
Hu35KsubC.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubc, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubcprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: b10453ea061b09172192bd21baa9083d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hu35ksubc
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Hu35KsubC\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubc,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubcprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubd.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 9b8f09012d27c7b41e0d20321d83a625
NeedsCompilation: no
Title: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubd)
Description: Affymetrix Human Genome HU35K Set annotation data (chip
hu35ksubd) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hu35ksubd
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hu35ksubd.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hu35ksubdcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 6f6423426969f306fb0d5171e75b5380
NeedsCompilation: no
Title: hu35ksubdcdf
Description: A package containing an environment representing the
Hu35KsubD.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubd, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu35ksubdcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu35ksubdprobe
Version: 2.18.0
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License: LGPL
MD5sum: 430a9b8ccd646d8cb06e6c1d750eec23
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hu35ksubd
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Hu35KsubD\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubd,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/hu35ksubdprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu6800.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7783c1539639aec9d3d736e38b4f028c
NeedsCompilation: no
Title: Affymetrix HuGeneFL Genome Array annotation data (chip hu6800)
Description: Affymetrix HuGeneFL Genome Array annotation data (chip
hu6800) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu6800
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hu6800.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: adSplit, biosigner, cola, geneplotter, GlobalAncova,
globaltest, idiogram, MLInterfaces, pcot2, SAGx
dependencyCount: 29
Package: hu6800cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: fa2b2ab8f3aba517c63ad2e65873d2f0
NeedsCompilation: no
Title: hu6800cdf
Description: A package containing an environment representing the
Hu6800.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu6800, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu6800cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu6800probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7a2383bd870cbc0628c210174e911250
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hu6800
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Hu6800\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hu6800, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/hu6800probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu6800subacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9e8ec301e066e400564976cd9750297e
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Title: hu6800subacdf
Description: A package containing an environment representing the
Hu6800subA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu6800suba,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu6800subacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu6800subbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 529aad5e4e73594c8cb66274d7e4adc5
NeedsCompilation: no
Title: hu6800subbcdf
Description: A package containing an environment representing the
Hu6800subB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subb,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu6800subbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
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Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 020fe3a6bdf44efbde15432b968433e8
NeedsCompilation: no
Title: hu6800subccdf
Description: A package containing an environment representing the
Hu6800subC.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subc,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hu6800subccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hu6800subdcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 7966c21babb23e18cca4faafc8720f0a
NeedsCompilation: no
Title: hu6800subdcdf
Description: A package containing an environment representing the
Hu6800subD.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subd,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/hu6800subdcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: huex.1.0.st.v2frmavecs
Version: 1.1.0
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License: GPL (>= 2)
MD5sum: 982935d07b526ff555790e309fe4147e
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type huex.1.0.st.v2
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biocViews: AnnotationData, AffymetrixChip, huex.1.0.st.v2,
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source.ver: src/contrib/huex.1.0.st.v2frmavecs_1.1.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: huex10stprobeset.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 52cf39820872de4ac5529aa1192328b5
NeedsCompilation: no
Title: Affymetrix huex10 annotation data (chip huex10stprobeset)
Description: Affymetrix huex10 annotation data (chip huex10stprobeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
huex10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/huex10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: huex10sttranscriptcluster.db
Version: 8.7.0
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7fb762002b5792c64ccafbd7bacf92a4
NeedsCompilation: no
Title: Affymetrix huex10 annotation data (chip
huex10sttranscriptcluster)
Description: Affymetrix huex10 annotation data (chip
huex10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
huex10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/huex10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: HuExExonProbesetLocation
Version: 1.15.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17)
License: LGPL
MD5sum: 11bf1b88d9e90711b4064497f611da4f
NeedsCompilation: no
Title: Probe sequence data for microarrays of type HuEx
Description: This package was automatically created by package
AnnotationForge version 1.7.17. The exon-level probeset genome
location was retrieved from Netaffx using AffyCompatible.
biocViews: AnnotationData, AffymetrixChip, probe, HuEx, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Raffaele A. Calogero <raffaele.calogero@unito.it>
source.ver: src/contrib/HuExExonProbesetLocation_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: HuExExonProbesetLocationHg18
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Depends: R (>= 1.6), AnnotationDbi (>= 1.8.0)
License: LGPL
MD5sum: bb00b7f5e4db2b04dca5951aa6bd073e
NeedsCompilation: no
Title: Exon-level probeset chromosome location for microarrays of type
HuEx
Description: This package was automatically created by package
AnnotationDbi version 1.8.0. The exon-level probeset genome
location was retrieved from Netaffx using AffyCompatible. The
exon-level probeset genome location was retrieved from Netaffx
using AffyCompatible. Genome release hg18.
biocViews: AnnotationData, AffymetrixChip, HuEx, Homo_sapiens
Author: Raffaele A. Calogero
Maintainer: Raffaele A. Calogero <raffaele.calogero@unito.it>
source.ver: src/contrib/HuExExonProbesetLocationHg18_0.0.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: HuExExonProbesetLocationHg19
Version: 0.0.3
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.8)
License: LGPL
MD5sum: 1a3843c95c82dc71a043d902961ba33a
NeedsCompilation: no
Title: Exon-level probeset chromosome location for microarrays of type
HuEx
Description: This package was automatically created by package
AnnotationDbi version 1.11.8. The exon-level probeset genome
location was retrieved from Netaffx using AffyCompatible. The
exon-level probeset genome location was retrieved from Netaffx
using AffyCompatible. Genome release hg19.
biocViews: AnnotationData, AffymetrixChip, HuEx, Homo_sapiens
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Maintainer: Raffaele A. Calogero <raffaele.calogero@unito.it>
source.ver: src/contrib/HuExExonProbesetLocationHg19_0.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hugene.1.0.st.v1frmavecs
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Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: 711a69e6fa6dd3737a90615222416dfc
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type
hugene.1.0.st.v1frmavecs
Description: This package was created by frmaTools version 1.13.0.
biocViews: AnnotationData, AffymetrixChip, hugene.1.0.st.v1,
Homo_sapiens, FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
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Maintainer: Matthew N. McCall <mmccall@jhsph.edu>
source.ver: src/contrib/hugene.1.0.st.v1frmavecs_1.1.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: hugene10stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 8c138a26b4aa0391edd69ef6abed3247
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Title: Affymetrix hugene10 annotation data (chip hugene10stprobeset)
Description: Affymetrix hugene10 annotation data (chip
hugene10stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene10sttranscriptcluster.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: d38c7a0fb26410d420e72c6aacf622ad
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Title: Affymetrix hugene10 annotation data (chip
hugene10sttranscriptcluster)
Description: Affymetrix hugene10 annotation data (chip
hugene10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: maEndToEnd
suggestsMe: ArrayTools
dependencyCount: 29
Package: hugene10stv1cdf
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Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: f1fb1c7076ac40b9e709f18e645d6181
NeedsCompilation: no
Title: hugene10stv1cdf
Description: A package containing an environment representing the
HuGene-1_0-st-v1.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, hugene10stv1,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/hugene10stv1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hugene10stv1probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 6ed3c17dd026acf008658a5994044c62
NeedsCompilation: no
Title: Probe sequence data for microarrays of type hugene10stv1
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
HuGene-1\_0-st-v1\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, hugene10stv1,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/hugene10stv1probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: hugene11stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 315c1dff0ba5240c6c5432d0dcc11eb1
NeedsCompilation: no
Title: Affymetrix hugene11 annotation data (chip hugene11stprobeset)
Description: Affymetrix hugene11 annotation data (chip
hugene11stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene11stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene11stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene11sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 0d366281eac2cba4b1fcfbe48596975a
NeedsCompilation: no
Title: Affymetrix hugene11 annotation data (chip
hugene11sttranscriptcluster)
Description: Affymetrix hugene11 annotation data (chip
hugene11sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene11sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene11sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene20stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 17e599fe0f885f17de29a6174324054d
NeedsCompilation: no
Title: Affymetrix hugene20 annotation data (chip hugene20stprobeset)
Description: Affymetrix hugene20 annotation data (chip
hugene20stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene20stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene20stprobeset.db_8.7.0.tar.gz
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hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene20sttranscriptcluster.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 85b23453d8e7c6c92673deaa7a82e51e
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Title: Affymetrix hugene20 annotation data (chip
hugene20sttranscriptcluster)
Description: Affymetrix hugene20 annotation data (chip
hugene20sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
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Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene20sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene21stprobeset.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ad101fb652b87da23d17547268019bb8
NeedsCompilation: no
Title: Affymetrix hugene21 annotation data (chip hugene21stprobeset)
Description: Affymetrix hugene21 annotation data (chip
hugene21stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene21stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene21stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hugene21sttranscriptcluster.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7d4d913f3e48f3eab45e036323d223b5
NeedsCompilation: no
Title: Affymetrix hugene21 annotation data (chip
hugene21sttranscriptcluster)
Description: Affymetrix hugene21 annotation data (chip
hugene21sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
hugene21sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/hugene21sttranscriptcluster.db_8.7.0.tar.gz
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hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: human.db0
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
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License: Artistic-2.0
MD5sum: 55a16882c1592ca92dd71acc9e30a725
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Title: Base Level Annotation databases for human
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biocViews: db0, AnnotationData, Homo_sapiens
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
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organism: Homo sapiens
source.ver: src/contrib/human.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: AnnotationForge
dependencyCount: 28
Package: human1mduov3bCrlmm
Version: 1.0.4
Imports: utils
License: Artistic-2.0
MD5sum: 0ff9f1e8bcc6348d6777bbb982ae0325
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 1M Duo
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human1mduov3bCrlmm_1.0.4.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: human1mv1cCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: b9f638c7b0ede50cb070f1bae85eb4dc
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata fast genotyping Illumina 1M arrays
using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human1mv1cCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: human370quadv3cCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: 33c3ccc3793ed95647418b746a5177f9
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 370kQuad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human370quadv3cCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: human370v1cCrlmm
Version: 1.0.2
Imports: utils
License: Artistic-2.0
MD5sum: 9ec4192f533faee2b14484de02548075
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 370k arrays
using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human370v1cCrlmm_1.0.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: oligoClasses
dependencyCount: 1
Package: human550v3bCrlmm
Version: 1.0.4
Imports: utils
License: Artistic-2.0
MD5sum: 20e6b008fab5e1084354c87ad50d18a8
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 550k arrays
using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human550v3bCrlmm_1.0.4.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: human610quadv1bCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: 609cf09410774e084ee6a3286652bb1a
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 610kQuad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human610quadv1bCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: MinimumDistance, VanillaICE
dependencyCount: 1
Package: human650v3aCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: 4b0de367ccc0f7499dcffe21ef1893c2
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 650k arrays
using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human650v3aCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: human660quadv1aCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: 5fd2d94a462e150c888f13c5c0975c36
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina 660kQuad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/human660quadv1aCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: humanCHRLOC
Version: 2.1.6
Depends: R(>= 2.7.0)
License: The Artistic License, Version 2.0
MD5sum: 113450c0822000c9b4e8a0141cf4b819
NeedsCompilation: no
Title: A data package containing annotation data for humanCHRLOC
Description: Annotation data file for humanCHRLOC assembled using data
from public data repositories
biocViews: FunctionalAnnotation, Homo_sapiens
Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James
W. MacDonald
Maintainer: Biocore Data Team <biocannotation@lists.fhcrc.org>
organism: Homo sapiens
source.ver: src/contrib/humanCHRLOC_2.1.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotate
dependencyCount: 0
Package: humancytosnp12v2p1hCrlmm
Version: 1.0.1
Imports: utils
License: Artistic-2.0
MD5sum: edf80245ddb28afb9fbaa6668187bf3a
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina CytoSNP 12
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/humancytosnp12v2p1hCrlmm_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: humanomni1quadv1bCrlmm
Version: 1.0.3
Imports: utils
License: Artistic-2.0
MD5sum: e81b2603f37d4cda3f28cd69a7296a23
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina Omni1 Quad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/humanomni1quadv1bCrlmm_1.0.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: humanomni25quadv1bCrlmm
Version: 1.0.2
Imports: utils
License: Artistic-2.0
MD5sum: 2ee1fa7bf712d7f81a167079c975d49f
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina Omni2.5 Quad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/humanomni25quadv1bCrlmm_1.0.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: humanomni5quadv1bCrlmm
Version: 1.0.0
Imports: utils
License: Artistic-2.0
MD5sum: 3ac4d6867c3d5590a6308d6edff0912b
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina Omni5 Quad
arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/humanomni5quadv1bCrlmm_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: humanomniexpress12v1bCrlmm
Version: 1.0.1
Imports: utils
License: Artistic-2.0
MD5sum: abdb730fc230db669e588e024ee7624b
NeedsCompilation: no
Title: Metadata for fast genotyping with the 'crlmm' package
Description: Package with metadata for genotyping Illumina Omni Express
12 arrays using the 'crlmm' package.
biocViews: AnnotationData
Author: Rafael A Irizarry
Maintainer: Matthew Ritchie <mritchie@wehi.edu.au>
source.ver: src/contrib/humanomniexpress12v1bCrlmm_1.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 1
Package: HuO22.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ddabf6c01f94c1dfd6ab35b40852828a
NeedsCompilation: no
Title: FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)
Description: FHCRC Genomics Shared Resource HuO22 Annotation Data
(HuO22) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip,
Homo_sapiens, HuO22
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: FHCRC Genomics Shared Resource
source.ver: src/contrib/HuO22.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: hwgcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Hs.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: a46bf1a242853bbab26351a11b18030a
NeedsCompilation: no
Title: Codelink Human Whole Genome Bioarray (~55 000 human genes)
annotation data (chip hwgcod)
Description: Codelink Human Whole Genome Bioarray (~55 000 human genes)
annotation data (chip hwgcod) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, hwgcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Homo sapiens
manufacturer: Codelink
source.ver: src/contrib/hwgcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: IlluminaHumanMethylation27k.db
Version: 1.4.8
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.9), org.Hs.eg.db
(>= 2.4.5)
Imports: methods, AnnotationDbi
Suggests: annotate
License: Artistic-2.0
MD5sum: 70586bda9db01d598723bb439c315367
NeedsCompilation: no
Title: Illumina Illumina Human Methylation 27k annotation data (chip
IlluminaHumanMethylation27k)
Description: Illumina Illumina Human Methylation 27k annotation data
(chip IlluminaHumanMethylation27k) assembled using data from
public repositories
biocViews: AnnotationData, IlluminaChip, Homo_sapiens, DNAMethylation
Author: Sean Davis <sdavis2@mail.nih.gov>
Maintainer: Tim Triche, Jr. <tim.triche@gmail.com>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/IlluminaHumanMethylation27k.db_1.4.8.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: IlluminaHumanMethylation27kanno.ilmn12.hg19
Version: 0.6.0
Depends: R (>= 3.3.0), minfi (>= 1.19.15)
License: Artistic-2.0
MD5sum: 765851336506120467c2e3cc6beef7ed
NeedsCompilation: no
Title: Annotation for Illumina's 27k methylation arrays
Description: An annotation package for Illumina's EPIC methylation
arrays.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens
Author: Jean-Philippe Fortin, Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
source.ver:
src/contrib/IlluminaHumanMethylation27kanno.ilmn12.hg19_0.6.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 130
Package: IlluminaHumanMethylation27kmanifest
Version: 0.4.0
Depends: R (>= 2.13.0), minfi
License: Artistic-2.0
MD5sum: c4cdda637dccf85f193342c7262b02a6
NeedsCompilation: no
Title: Annotation for Illumina's 27k methylation arrays
Description: Manifest for Illumina's 27k array data
biocViews: IlluminaChip, Homo_sapiens, DNAMethylation
Author: Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
source.ver:
src/contrib/IlluminaHumanMethylation27kmanifest_0.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 130
Package: IlluminaHumanMethylation450kanno.ilmn12.hg19
Version: 0.6.0
Depends: R (>= 3.3.0), minfi (>= 1.19.15)
License: Artistic-2.0
MD5sum: 2f569646ca8adc49863224b1cd076a79
NeedsCompilation: no
Title: Annotation for Illumina's 450k methylation arrays
Description: Manifests and annotation for Illumina's 450k array data.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens
Author: Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
source.ver:
src/contrib/IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: conumee, missMethyl, wateRmelon,
FlowSorted.CordBloodCombined.450k, minfiData,
methylationArrayAnalysis
importsMe: EnMCB, funtooNorm, methylCC, methylGSA, DMRcatedata
suggestsMe: bigmelon, DMRcate, MEAL, methylumi, minfi, REMP, RnBeads,
TCGAutils, FlowSorted.Blood.EPIC
dependencyCount: 130
Package: IlluminaHumanMethylation450kmanifest
Version: 0.4.0
Depends: R (>= 2.13.0), minfi
License: Artistic-2.0
MD5sum: 664d1f5a3892974334faa26757269509
NeedsCompilation: no
Title: Annotation for Illumina's 450k methylation arrays
Description: Manifest for Illumina's 450k array data
biocViews: IlluminaChip, Homo_sapiens, DNAMethylation
Author: Kasper Daniel Hansen, Martin Aryee
Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
source.ver:
src/contrib/IlluminaHumanMethylation450kmanifest_0.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: conumee, shinyMethyl, skewr, minfiData,
methylationArrayAnalysis
importsMe: funtooNorm, methylCC, missMethyl
suggestsMe: minfi, RnBeads, FlowSorted.Blood.EPIC,
FlowSorted.CordBloodCombined.450k, MLML2R
dependencyCount: 130
Package: IlluminaHumanMethylation450kprobe
Version: 2.0.6
Depends: R (>= 2.10), AnnotationDbi (>= 1.13.18)
License: LGPL
MD5sum: 84c31861fcbaddbf2a9c500b8d8d767d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type
IlluminaHumanMethylation450k
Description: Probe sequences from Illumina (ftp.illumina.com) for hm450
probes
biocViews: AnnotationData, Illumina, Homo_sapiens
Author: Tim Triche, Jr. <ttriche@usc.edu>
Maintainer: Tim Triche, Jr. <ttriche@usc.edu>
source.ver: src/contrib/IlluminaHumanMethylation450kprobe_2.0.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Version: 0.6.0
Depends: R (>= 3.3.0), minfi (>= 1.19.15)
License: Artistic-2.0
MD5sum: 6a8e2398a0f930aa7828a1412fb21e88
NeedsCompilation: no
Title: Annotation for Illumina's EPIC methylation arrays
Description: An annotation package for Illumina's EPIC methylation
arrays.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens
Author: Kasper Daniel Hansen [cre, aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC
BugReports:
https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues
source.ver:
src/contrib/IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: conumee, minfiDataEPIC
suggestsMe: bigmelon, MEAL, REMP, wateRmelon, FlowSorted.Blood.EPIC,
FlowSorted.CordBloodCombined.450k
dependencyCount: 130
Package: IlluminaHumanMethylationEPICanno.ilm10b3.hg19
Version: 0.6.0
Depends: R (>= 3.3.0), minfi (>= 1.19.15)
License: Artistic-2.0
MD5sum: 2dac8e889486386eaea1bb7ce1beea2e
NeedsCompilation: no
Title: Annotation for Illumina's EPIC methylation arrays
Description: An annotation package for Illumina's EPIC methylation
arrays.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens
Author: Kasper Daniel Hansen [cre, aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC
BugReports:
https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues
source.ver:
src/contrib/IlluminaHumanMethylationEPICanno.ilm10b3.hg19_0.6.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 130
Package: IlluminaHumanMethylationEPICanno.ilm10b4.hg19
Version: 0.6.0
Depends: R (>= 3.3.0), minfi (>= 1.19.15)
License: Artistic-2.0
MD5sum: 2d0c05917bcbf9ba1e354380d4e17a77
NeedsCompilation: no
Title: Annotation for Illumina's EPIC methylation arrays
Description: An annotation package for Illumina's EPIC methylation
arrays.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens
Author: Kasper Daniel Hansen [cre, aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC
BugReports:
https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues
source.ver:
src/contrib/IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: missMethyl, FlowSorted.Blood.EPIC,
FlowSorted.CordBloodCombined.450k
importsMe: methylGSA, DMRcatedata
suggestsMe: DMRcate
dependencyCount: 130
Package: IlluminaHumanMethylationEPICmanifest
Version: 0.3.0
Depends: R (>= 3.2.0), minfi
License: Artistic-2.0
MD5sum: c6b0268de177badfe0b8184002da7e16
NeedsCompilation: no
Title: Manifest for Illumina's EPIC methylation arrays
Description: A manifest package for Illumina's EPIC methylation arrays.
biocViews: IlluminaChip, Homo_sapiens, DNAMethylation
Author: Kasper Daniel Hansen [cre, aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC
BugReports:
https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues
source.ver:
src/contrib/IlluminaHumanMethylationEPICmanifest_0.3.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: conumee, minfiDataEPIC
importsMe: missMethyl
suggestsMe: wateRmelon
dependencyCount: 130
Package: illuminaHumanv1.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 2c362256b7be2861b8bf6e0d1fe46786
NeedsCompilation: no
Title: Illumina HumanWG6v1 annotation data (chip illuminaHumanv1)
Description: Illumina HumanWG6v1 annotation data (chip illuminaHumanv1)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanv1
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanv1.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: GGdata
suggestsMe: attract, GGBase, GGtools, BeadArrayUseCases, cgdv17,
hmyriB36
dependencyCount: 29
Package: illuminaHumanv2.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 006de5f671a9a68fb27a6b6bce39c555
NeedsCompilation: no
Title: Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)
Description: Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanv2
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanv2.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: BeadArrayUseCases
dependencyCount: 29
Package: illuminaHumanv2BeadID.db
Version: 1.8.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.8), org.Hs.eg.db
(>= 2.4.5)
Imports: methods, AnnotationDbi
Suggests: annotate
License: Artistic-2.0
MD5sum: b5a2b2deaa9a9b245a141043e7bc5270
NeedsCompilation: no
Title: Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)
Description: Illumina HumanWGv2 annotation data (chip
illuminaHumanv2BeadID) assembled using data from public
repositories to be used with data summarized from bead-level
data with numeric ArrayAddressIDs as keys. Illumina probes with
a No match or Bad quality score were removed prior to
annotation. See
http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html
and Barbosa-Morais et al (2010) A re-annotation pipeline for
Illumina BeadArrays: improving the interpretation of gene
expression data. Nucleic Acids Research.
biocViews: AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanv2BeadID
Author: Mark Dunning, Matt Ritchie, Nuno Barbosa-Morais
Maintainer: Mark Dunning <mark.dunning@cancer.org.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanv2BeadID.db_1.8.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaHumanv3.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 7d9e7534f0b60f0e3e7473e545ef373d
NeedsCompilation: no
Title: Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)
Description: Illumina HumanHT12v3 annotation data (chip
illuminaHumanv3) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanv3
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanv3.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: beadarray, BeadArrayUseCases, RobLoxBioC
dependencyCount: 29
Package: illuminaHumanv4.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 42d554559ac0106dc71317ffaf466421
NeedsCompilation: no
Title: Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)
Description: Illumina HumanHT12v4 annotation data (chip
illuminaHumanv4) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanv4
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanv4.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: blima, blimaTestingData
dependencyCount: 29
Package: illuminaHumanWGDASLv3.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 32e8e24555c16f6d0148438d4a841ab8
NeedsCompilation: no
Title: Illumina HumanHT12WGDASLv3 annotation data (chip
illuminaHumanWGDASLv3)
Description: Illumina HumanHT12WGDASLv3 annotation data (chip
illuminaHumanWGDASLv3) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanWGDASLv3
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanWGDASLv3.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaHumanWGDASLv4.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Hs.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 4cc1f192de838f2b6c1b148706d354ca
NeedsCompilation: no
Title: Illumina HumanWGDASLv4 annotation data (chip
illuminaHumanWGDASLv4)
Description: Illumina HumanWGDASLv4 annotation data (chip
illuminaHumanWGDASLv4) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
illuminaHumanWGDASLv4
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/illuminaHumanWGDASLv4.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaMousev1.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Mm.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 13818c3b9acabe75550492bbe638fc05
NeedsCompilation: no
Title: Illumina MouseWG6v1 annotation data (chip illuminaMousev1)
Description: Illumina MouseWG6v1 annotation data (chip illuminaMousev1)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus,
illuminaMousev1
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Mus musculus
manufacturer: Illumina
source.ver: src/contrib/illuminaMousev1.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaMousev1p1.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Mm.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: f6a4af01480a6f8d1d2d9b9b64a2b073
NeedsCompilation: no
Title: Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)
Description: Illumina MouseWG6v1p1 annotation data (chip
illuminaMousev1p1) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus,
illuminaMousev1p1
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Mus musculus
manufacturer: Illumina
source.ver: src/contrib/illuminaMousev1p1.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaMousev2.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Mm.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: fba228a71f264f976d8cdb035861974d
NeedsCompilation: no
Title: Illumina MouseWG6v2 annotation data (chip illuminaMousev2)
Description: Illumina MouseWG6v2 annotation data (chip illuminaMousev2)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus,
illuminaMousev2
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Mus musculus
manufacturer: Illumina
source.ver: src/contrib/illuminaMousev2.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: illuminaRatv1.db
Version: 1.26.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20),
org.Rn.eg.db (>= 3.1.2)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 5de2324d7b96c0cdb3301ef269341aa8
NeedsCompilation: no
Title: Illumina Ratv1 annotation data (chip illuminaRatv1)
Description: Illumina Ratv1 annotation data (chip illuminaRatv1)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Rattus_norvegicus,
illuminaRatv1
Author: Mark Dunning, Andy Lynch, Matthew Eldridge
Maintainer: Mark Dunning <mark.dunning@cruk.cam.ac.uk>
organism: Rattus norvegicus
manufacturer: Illumina
source.ver: src/contrib/illuminaRatv1.db_1.26.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: indac.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Dm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: cba72edcf7278033151e0eac077d8ff8
NeedsCompilation: no
Title: INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data
(chip indac)
Description: INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation
data (chip indac) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, INDACChip, Drosophila_melanogaster,
indac
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
manufacturer: INDAC
source.ver: src/contrib/indac.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: JASPAR2018
Version: 1.1.1
Depends: R (>= 3.4.0), methods
Suggests: TFBSTools (>= 1.15.6)
License: GPL-2
MD5sum: d91fce6ea0dc9fa6a3be6ebc05c1af5d
NeedsCompilation: no
Title: Data package for JASPAR 2018
Description: Data package for JASPAR 2018. To search this databases,
please use the package TFBSTools (>= 1.15.6).
biocViews: FunctionalAnnotation
Author: Ge Tan <ge_tan@live.com>
Maintainer: Ge Tan <ge_tan@live.com>
URL: http://jaspar.genereg.net/
source.ver: src/contrib/JASPAR2018_1.1.1.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: enrichTF, esATAC, primirTSS
suggestsMe: pageRank, TFBSTools
dependencyCount: 1
Package: JASPAR2020
Version: 0.99.10
Depends: R (>= 3.6.0), methods
Suggests: knitr, rmarkdown, TFBSTools (>= 1.23.1)
License: GPL-2
MD5sum: bfcaf41ebf0935b8d146afd37719de2d
NeedsCompilation: no
Title: Data package for JASPAR database (version 2020)
Description: Data package for JASPAR2020. To search this databases,
please use the package TFBSTools (>= 1.23.1).
biocViews: AnnotationData, FunctionalAnnotation
Author: Damir Baranasic <damir.baranasic@lms.mrc.ac.uk>
Maintainer: Damir Baranasic <damir.baranasic@lms.mrc.ac.uk>
URL: http://jaspar.genereg.net/
VignetteBuilder: knitr
source.ver: src/contrib/JASPAR2020_0.99.10.tar.gz
vignettes: vignettes/JASPAR2020/inst/doc/JASPAR2020.html
vignetteTitles: JASPAR2020
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/JASPAR2020/inst/doc/JASPAR2020.R
suggestsMe: MethReg
dependencyCount: 1
Package: JazaeriMetaData.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 3a154a74ac2acebe3471b039c9d9a4dc
NeedsCompilation: no
Title: A data package containing annotation data for JazaeriMetaData
Description: A data package containing annotation data for
JazaeriMetaData assembled using data from public repositories
biocViews: ChipDb, AnnotationData, National Cancer InstituteChip,
Homo_sapiens, JazaeriMetaData
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: National Cancer Institute
source.ver: src/contrib/JazaeriMetaData.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: KEGG.db
Version: 3.2.4
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3)
Imports: methods, AnnotationDbi
Suggests: DBI
License: file LICENSE
License_restricts_use: yes
MD5sum: 72fde6d0c81ecc42d853607e83476fd5
NeedsCompilation: no
Title: A set of annotation maps for KEGG
Description: A set of annotation maps for KEGG assembled using data
from KEGG
biocViews: AnnotationData, FunctionalAnnotation
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
PackageStatus: Deprecated
source.ver: src/contrib/KEGG.db_3.2.4.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
dependsOnMe: annaffy, ExpressionView
importsMe: adSplit, ExpressionView, mdgsa, PCpheno
suggestsMe: AnnotationDbi, BiocCaseStudies, CancerMutationAnalysis,
Category, categoryCompare, eisa, GeneAnswers, GenomicRanges,
GlobalAncova, KEGGgraph, MLP, pcot2, PCpheno, phenoTest,
Rsamtools, RTopper, SAGx
dependencyCount: 28
Package: LAPOINTE.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 434b25ad7411201d8be6bb1a0463b387
NeedsCompilation: no
Title: A package containing metadata for LAPOINTE arrays
Description: A package containing metadata for LAPOINTE arrays
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens, LAPOINTE
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: CUSTOM
source.ver: src/contrib/LAPOINTE.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: LowMACAAnnotation
Version: 0.99.3
Depends: R (>= 2.10)
Suggests: knitr, rmarkdown
License: GPL-3
MD5sum: 9e0d3fe7f30fe48aef9c4387eb5bacfa
NeedsCompilation: no
Title: LowMACAAnnotation
Description: A package containing the data to run LowMACA package.
biocViews: FunctionalAnnotation
Author: Stefano de Pretis, Giorgio Melloni
Maintainer: Stefano de Pretis <ste.depo@gmail.com>, Giorgio Melloni
<melloni.giorgio@gmail.com>
VignetteBuilder: knitr
source.ver: src/contrib/LowMACAAnnotation_0.99.3.tar.gz
vignettes: vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.pdf
vignetteTitles: LowMACAAnnotation
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.R
importsMe: LowMACA, PrecisionTrialDrawer
dependencyCount: 0
Package: LRBase.Ath.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 5dd54b7e857acb44155c2af047223786
NeedsCompilation: no
Title: Ligand-Receptor list for Arabidopsis thaliana (Ath, Thale cress,
Taxonomy ID: 3702)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Ath.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Ath.eg.db/inst/doc/LRBase.Ath.eg.db.pdf
vignetteTitles: LRBase.Ath.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Ath.eg.db/inst/doc/LRBase.Ath.eg.db.R
dependencyCount: 29
Package: LRBase.Bta.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 6ebc6665147a6bf3b8b88fca6dc48059
NeedsCompilation: no
Title: Ligand-Receptor list for Bos taurus (Bta, Cow, Taxonomy ID:
9913)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Bta.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Bta.eg.db/inst/doc/LRBase.Bta.eg.db.pdf
vignetteTitles: LRBase.Bta.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Bta.eg.db/inst/doc/LRBase.Bta.eg.db.R
dependencyCount: 29
Package: LRBase.Cel.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: c5b2198780a4d6debe1083791820d959
NeedsCompilation: no
Title: Ligand-Receptor list for Caenorhabditis elegans (Cel, Worm,
Taxonomy ID: 6239)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Cel.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Cel.eg.db/inst/doc/LRBase.Cel.eg.db.pdf
vignetteTitles: LRBase.Cel.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Cel.eg.db/inst/doc/LRBase.Cel.eg.db.R
dependencyCount: 29
Package: LRBase.Dme.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 2669984bb9f587301bd6ae24c172fdfd
NeedsCompilation: no
Title: Ligand-Receptor list for Drosophila melanogaster (Dme, Fruit
fly, Taxonomy ID: 7227)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Dme.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Dme.eg.db/inst/doc/LRBase.Dme.eg.db.pdf
vignetteTitles: LRBase.Dme.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Dme.eg.db/inst/doc/LRBase.Dme.eg.db.R
dependencyCount: 29
Package: LRBase.Dre.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 6f5c8bc53a6c33d388afef881b894695
NeedsCompilation: no
Title: Ligand-Receptor list for Danio rerio (Dre, Zebrafish, Taxonomy
ID: 7955)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Dre.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Dre.eg.db/inst/doc/LRBase.Dre.eg.db.pdf
vignetteTitles: LRBase.Dre.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Dre.eg.db/inst/doc/LRBase.Dre.eg.db.R
dependencyCount: 29
Package: LRBase.Gga.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: b5e8716a0514606190e2cc0627a591e0
NeedsCompilation: no
Title: Ligand-Receptor list for Gallus gallus (Gga, Chicken, Taxonomy
ID: 9031)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Gga.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Gga.eg.db/inst/doc/LRBase.Gga.eg.db.pdf
vignetteTitles: LRBase.Gga.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Gga.eg.db/inst/doc/LRBase.Gga.eg.db.R
dependencyCount: 29
Package: LRBase.Hsa.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 7ce498bd768f7289af9a3ffd74ac0162
NeedsCompilation: no
Title: Ligand-Receptor list for Homo sapiens (Hsa, Human, Taxonomy ID:
9606)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Hsa.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Hsa.eg.db/inst/doc/LRBase.Hsa.eg.db.pdf
vignetteTitles: LRBase.Hsa.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Hsa.eg.db/inst/doc/LRBase.Hsa.eg.db.R
suggestsMe: scTensor
dependencyCount: 29
Package: LRBase.Mmu.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 91845d7309638f8800f0e21e72718dcd
NeedsCompilation: no
Title: Ligand-Receptor list for Mus musculus (Mmu, Mouse, Taxonomy ID:
10090)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Mmu.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Mmu.eg.db/inst/doc/LRBase.Mmu.eg.db.pdf
vignetteTitles: LRBase.Mmu.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Mmu.eg.db/inst/doc/LRBase.Mmu.eg.db.R
suggestsMe: scTensor
dependencyCount: 29
Package: LRBase.Pab.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 1b5c6515198eff0e0eab8ea44b235913
NeedsCompilation: no
Title: Ligand-Receptor list for Pongo abelii (Pab, Orangutan, Taxonomy
ID: 9601)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Pab.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Pab.eg.db/inst/doc/LRBase.Pab.eg.db.pdf
vignetteTitles: LRBase.Pab.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Pab.eg.db/inst/doc/LRBase.Pab.eg.db.R
dependencyCount: 29
Package: LRBase.Rno.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: de721b74e97c2300f4cdb69120d22e47
NeedsCompilation: no
Title: Ligand-Receptor list for Rattus norvegicus (Rno, Rat, Taxonomy
ID: 10116)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Rno.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Rno.eg.db/inst/doc/LRBase.Rno.eg.db.pdf
vignetteTitles: LRBase.Rno.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Rno.eg.db/inst/doc/LRBase.Rno.eg.db.R
dependencyCount: 29
Package: LRBase.Ssc.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 651f0aedce49c864bb805daf0ebedda6
NeedsCompilation: no
Title: Ligand-Receptor list for Sus scrofa (Ssc, Pig, Taxonomy ID:
9823)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Ssc.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Ssc.eg.db/inst/doc/LRBase.Ssc.eg.db.pdf
vignetteTitles: LRBase.Ssc.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Ssc.eg.db/inst/doc/LRBase.Ssc.eg.db.R
dependencyCount: 29
Package: LRBase.Xtr.eg.db
Version: 2.0.0
Depends: R (>= 3.5.0), LRBaseDbi
Imports: RSQLite
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 379a48b7a172d846c63c6f5c4cf2f853
NeedsCompilation: no
Title: Ligand-Receptor list for Xenopus tropicalis (Xtr, Tropical
clawed frog, Taxonomy ID: 8364)
Description: Contains the LRBaseDb object to access data from several
related annotation packages.
biocViews: AnnotationData, FunctionalAnnotation
Author: Koki Tsuyuzaki
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/LRBase.Xtr.eg.db_2.0.0.tar.gz
vignettes: vignettes/LRBase.Xtr.eg.db/inst/doc/LRBase.Xtr.eg.db.pdf
vignetteTitles: LRBase.Xtr.eg.db
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/LRBase.Xtr.eg.db/inst/doc/LRBase.Xtr.eg.db.R
dependencyCount: 29
Package: lumiHumanAll.db
Version: 1.22.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25),
org.Hs.eg.db (>= 2.10.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: ce7e219b50833ceab203f0bbfb11d917
NeedsCompilation: no
Title: Illumina Human Illumina expression annotation data (chip
lumiHumanAll)
Description: Illumina Human Illumina expression annotation data (chip
lumiHumanAll) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens,
lumiHumanAll
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Illumina
source.ver: src/contrib/lumiHumanAll.db_1.22.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: eQTL
importsMe: MineICA
suggestsMe: lumi
dependencyCount: 29
Package: lumiHumanIDMapping
Version: 1.10.1
Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>=
1.13.13)
Imports: methods, AnnotationDbi, DBI
License: The Artistic License, Version 2.0
MD5sum: 007e5aa2f1596cc08d888ba6dce7148a
NeedsCompilation: no
Title: Illumina Identifier mapping for Human
Description: This package includes mappings information between
different types of Illumina IDs of Illumina Human chips and
nuIDs. It also includes mappings of all nuIDs included in
Illumina Human chips to RefSeq IDs with mapping qualities
information.
biocViews: AnnotationData, Homo sapiens
Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin
Maintainer: Gilbert Feng <g-feng@northwestern.edu>
organism: Homo sapiens
source.ver: src/contrib/lumiHumanIDMapping_1.10.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: lumi
dependencyCount: 151
Package: lumiMouseAll.db
Version: 1.22.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25),
org.Mm.eg.db (>= 2.10.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 6f12330377aaddc83bfa9c37477b999e
NeedsCompilation: no
Title: Illumina Mouse Illumina expression annotation data (chip
lumiMouseAll)
Description: Illumina Mouse Illumina expression annotation data (chip
lumiMouseAll) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus,
lumiMouseAll
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Illumina
source.ver: src/contrib/lumiMouseAll.db_1.22.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: lumiMouseIDMapping
Version: 1.10.0
Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>=
1.13.13)
Imports: methods, AnnotationDbi
License: The Artistic License, Version 2.0
MD5sum: 305aba80ebf6ef4c26899302ea9e50e8
NeedsCompilation: no
Title: Illumina Identifier mapping for Mouse
Description: This package includes mappings information between
different types of Illumina IDs of Illumina Mouse chips and
nuIDs. It also includes mappings of all nuIDs included in
Illumina Mouse chips to RefSeq IDs with mapping qualities
information.
biocViews: AnnotationData, Mus musculus
Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin
Maintainer: Gilbert Feng <g-feng@northwestern.edu>
organism: Mus musculus
source.ver: src/contrib/lumiMouseIDMapping_1.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 151
Package: lumiRatAll.db
Version: 1.22.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25),
org.Rn.eg.db (>= 2.10.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 65027624574d5e33f18b0a54a54f4be9
NeedsCompilation: no
Title: Illumina Rat Illumina expression annotation data (chip
lumiRatAll)
Description: Illumina Rat Illumina expression annotation data (chip
lumiRatAll) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, IlluminaChip, Rattus_norvegicus,
lumiRatAll
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Illumina
source.ver: src/contrib/lumiRatAll.db_1.22.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: lumiRatIDMapping
Version: 1.10.0
Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>=
1.13.13)
Imports: methods, AnnotationDbi
License: The Artistic License, Version 2.0
MD5sum: 1122fc25e3fff62678bed36f9d7b5709
NeedsCompilation: no
Title: Illumina Identifier mapping for Rat
Description: This package includes mappings information between
different types of Illumina IDs of Illumina Rat chips and
nuIDs. It also includes mappings of all nuIDs included in
Illumina Rat chips to RefSeq IDs with mapping qualities
information.
biocViews: AnnotationData, Rattus norvegicus
Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin
Maintainer: Gilbert Feng <g-feng@northwestern.edu>
organism: Rattus norvegicus
source.ver: src/contrib/lumiRatIDMapping_1.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 151
Package: LymphoSeqDB
Version: 0.99.2
Depends: R (>= 3.2)
License: Artistic-2.0
MD5sum: 22fc0dc2439ef497982a5ffddda1e418
NeedsCompilation: no
Title: LymphoSeq annotation databases
Description: This package provides annotation databases that support
the package LymphoSeq.
biocViews: AnnotationData, SequenceAnnotation, GenomicSequence
Author: David Coffey <dcoffey@fredhutch.org>
Maintainer: David Coffey <dcoffey@fredhutch.org>
source.ver: src/contrib/LymphoSeqDB_0.99.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: LymphoSeq
dependencyCount: 0
Package: m10kcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Mm.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 04811628e4b37cd6d24e0b2a17d79ab8
NeedsCompilation: no
Title: Codelink UniSet Mouse I Bioarray (~10 000 mouse gene targets)
annotation data (chip m10kcod)
Description: Codelink UniSet Mouse I Bioarray (~10 000 mouse gene
targets) annotation data (chip m10kcod) assembled using data
from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, m10kcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Mus musculus
manufacturer: Codelink
source.ver: src/contrib/m10kcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: m20kcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Mm.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: f2f734fb41e1ae4e949abf09687733bf
NeedsCompilation: no
Title: Codelink UniSet Mouse 20k I Bioarray annotation data (chip
m20kcod)
Description: Codelink UniSet Mouse 20k I Bioarray annotation data (chip
m20kcod) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, m20kcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Mus musculus
manufacturer: Codelink
source.ver: src/contrib/m20kcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MafDb.1Kgenomes.phase1.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: a20471906a41678ce710879e92d2a9dc
NeedsCompilation: no
Title: Minor allele frequency data from 1000 Genomes Phase 1 for GRCh38
Description: Store minor allele frequency data from the Phase 1 of the
1000 Genomes Project for the human genome version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.1Kgenomes.phase1.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.1Kgenomes.phase1.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: ece6b758ca0e1a8a307b5cd5829671f4
NeedsCompilation: no
Title: Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5
Description: Store minor allele frequency data from the Phase 1 of the
1000 Genomes Project for the human genome version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.1Kgenomes.phase1.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomicScores, VariantFiltering
dependencyCount: 109
Package: MafDb.1Kgenomes.phase3.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: ee57d9cb6a1748932407d20b9bffd8a2
NeedsCompilation: no
Title: Minor allele frequency data from 1000 Genomes Phase 3 for GRCh38
Description: Store minor allele frequency data from the Phase 3 of the
1000 Genomes Project for the human genome version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.1Kgenomes.phase3.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: methrix
dependencyCount: 109
Package: MafDb.1Kgenomes.phase3.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: ac3cbbf52eb2026f067a4f42c6654555
NeedsCompilation: no
Title: Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5
Description: Store minor allele frequency data from the Phase 3 of the
1000 Genomes Project for the human genome version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.1Kgenomes.phase3.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: appreci8R
suggestsMe: methrix
dependencyCount: 109
Package: MafDb.ExAC.r1.0.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: 303332c918996d8cb3e7b7c74d694dd1
NeedsCompilation: no
Title: Minor allele frequency data from ExAC release 1.0 for GRCh38
Description: Store minor allele frequency data from the Exome
Aggregation Consortium (ExAC release 1.0) for the human genome
version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.ExAC.r1.0.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.ExAC.r1.0.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: 4d523554a2b0eb296bada9d33a78eefc
NeedsCompilation: no
Title: Minor allele frequency data from ExAC release 1.0 for hs37d5
Description: Store minor allele frequency data from the Exome
Aggregation Consortium (ExAC release 1.0) for the human genome
version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.ExAC.r1.0.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: appreci8R
dependencyCount: 109
Package: MafDb.ExAC.r1.0.nonTCGA.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: cf447f59cc8b1cd7ca395fd3fe6e4730
NeedsCompilation: no
Title: Minor allele frequency data from ExAC release 1.0 subset of
nonTCGA exomes for GRCh38
Description: Store minor allele frequency data from the Exome
Aggregation Consortium (ExAC release 1.0 subset of nonTCGA
exomes) for the human genome version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.ExAC.r1.0.nonTCGA.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.ExAC.r1.0.nonTCGA.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: da3a699e9776b0b769b3bc1e9fb742f0
NeedsCompilation: no
Title: Minor allele frequency data from ExAC release 1.0 subset of
nonTCGA exomes for hs37d5
Description: Store minor allele frequency data from the Exome
Aggregation Consortium (ExAC release 1.0 subset of nonTCGA
exomes) for the human genome version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.ExAC.r1.0.nonTCGA.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.gnomAD.r2.1.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: 0e842b24476aeb834f57f9302a36ea18
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD release 2.1 for GRCh38
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD release 2.1) for the human genome
version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.gnomAD.r2.1.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.gnomAD.r2.1.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: 12221c461930ae1ecfe925943a619d56
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD release 2.1 for hs37d5
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD release 2.1) for the human genome
version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.gnomAD.r2.1.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.gnomAD.r3.0.GRCh38
Version: 3.11.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: 7b97a74e64859efa5f9e086980b57dd1
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD release 3.0 for GRCh38
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD release 3.0) for the human genome
version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.gnomAD.r3.0.GRCh38_3.11.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.gnomADex.r2.1.GRCh38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: a0ab5b74997669fabb8aecfd9ef7f767
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD exomes release 2.1 for
GRCh38
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD exomes release 2.1) for the human
genome version GRCh38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.gnomADex.r2.1.GRCh38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.gnomADex.r2.1.hs37d5
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: 6ca4d742571687a13906d99cea2dbf1f
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD exomes release 2.1 for
hs37d5
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD exomes release 2.1) for the human
genome version hs37d5.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.gnomADex.r2.1.hs37d5_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: appreci8R
dependencyCount: 109
Package: MafDb.TOPMed.freeze5.hg19
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: 7fdb58eb69187ade189689da58ca6266
NeedsCompilation: no
Title: Minor allele frequency data from TOPMed for hg19
Description: Store minor allele frequency data from NHLBI TOPMed for
the human genome version hg19.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.TOPMed.freeze5.hg19_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafDb.TOPMed.freeze5.hg38
Version: 3.10.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: a3355623fde26b83dfd346a32829f073
NeedsCompilation: no
Title: Minor allele frequency data from TOPMed for hg38
Description: Store minor allele frequency data from NHLBI TOPMed for
the human genome version hg38.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafDb.TOPMed.freeze5.hg38_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: MafH5.gnomAD.r3.0.GRCh38
Version: 3.11.0
Depends: R (>= 3.5.0), GenomicScores (>= 1.11.7)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome, rhdf5, HDF5Array
Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
License: Artistic-2.0
MD5sum: b640ae2f8bceff443bfe5f56e20660cd
NeedsCompilation: no
Title: Minor allele frequency data from gnomAD release 3.0 for GRCh38
stored using a HDF5 backend
Description: Store minor allele frequency data from the Genome
Aggregation Database (gnomAD release 3.0) for the human genome
version GRCh38 using a HDF5 backend.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/MafH5.gnomAD.r3.0.GRCh38_3.11.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: maizecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: f9dec9e46688d96daf1e07d4e815afb4
NeedsCompilation: no
Title: maizecdf
Description: A package containing an environment representing the
Maize.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, maize, Zea_mays
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/maizecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: maizeprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: ef7ba47de2346b3552621263399c05d1
NeedsCompilation: no
Title: Probe sequence data for microarrays of type maize
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Maize\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, maize, Zea_mays
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/maizeprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: malaria.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: b20ecf6c0840c690ea595ecc9661df6f
NeedsCompilation: no
Title: Base Level Annotation databases for malaria
Description: Base annotation databases for malaria, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Plasmodium_falciparum
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Plasmodium falciparum
source.ver: src/contrib/malaria.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: medicagocdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 1fbb2e4c070344d18e65f1b3993867db
NeedsCompilation: no
Title: medicagocdf
Description: A package containing an environment representing the
Medicago.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, medicago,
Medicago_trunculata
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/medicagocdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: medicagoprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 83b9887ad2ed26c704b0ca7115e5838d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type medicago
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Medicago\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, medicago,
Medicago_trunculata
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/medicagoprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: MeSH.Aca.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: ee472d6b86f302fadf0e2baa28c6a89e
NeedsCompilation: no
Title: Mapping table for Anolis carolinensis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Anolis carolinensis
source.ver: src/contrib/MeSH.Aca.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
dependencyCount: 29
Package: MeSH.Aga.PEST.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 3d4856fb98a1bce9923ddd51656fdbd2
NeedsCompilation: no
Title: Mapping table for Anopheles gambiae str. PEST Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Anopheles gambiae str. PEST
source.ver: src/contrib/MeSH.Aga.PEST.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ame.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 85ece6da3a403797cdb986fe513c07f5
NeedsCompilation: no
Title: Mapping table for Ailuropoda melanoleuca Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Ailuropoda melanoleuca
source.ver: src/contrib/MeSH.Ame.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Aml.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 7188ab8c0e015fea05c2c4fdb94fed7b
NeedsCompilation: no
Title: Mapping table for Apis mellifera Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Apis mellifera
source.ver: src/contrib/MeSH.Aml.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ana.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: f02a6f8dc250eea64b8caefa5d2400f0
NeedsCompilation: no
Title: Mapping table for Filamentos cyanobacteria Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Filamentos cyanobacteria
source.ver: src/contrib/MeSH.Ana.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ani.FGSC.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 660636fe027dee0945b387929c367cb7
NeedsCompilation: no
Title: Mapping table for Aspergillus nidulans FGSC A4 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Aspergillus nidulans FGSC A4
source.ver: src/contrib/MeSH.Ani.FGSC.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.AOR.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: f88226bc22fb56ccf336e263f6d9d11f
NeedsCompilation: no
Title: A set of annotation maps describing the entire MeSH
Description: A set of AOR (ancestor-offspring relationship) in MeSH.
biocViews: MeSHDb, AnnotationData, FunctionalAnnotation
Author: Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/MeSH.AOR.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
dependencyCount: 29
Package: MeSH.Ath.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: e56231495bb8c3aa1f1852b56131af55
NeedsCompilation: no
Title: Mapping table for Arabidopsis thaliana Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Arabidopsis thaliana
source.ver: src/contrib/MeSH.Ath.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Bfl.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 71f6055442d0a95ba7c26cac8c15fc8f
NeedsCompilation: no
Title: Mapping table for Branchiostoma floridae Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Branchiostoma floridae
source.ver: src/contrib/MeSH.Bfl.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Bsu.168.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 604e20a7e264a62c1deda754de5d039d
NeedsCompilation: no
Title: Mapping table for Bacillus subtilis subsp. spizizenii str. 168
Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Bacillus subtilis subsp. spizizenii str. 168
source.ver: src/contrib/MeSH.Bsu.168.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
dependencyCount: 29
Package: MeSH.Bta.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 30df7b771366f196869eca752591add4
NeedsCompilation: no
Title: Mapping table for Bos taurus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Bos taurus
source.ver: src/contrib/MeSH.Bta.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cal.SC5314.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: efeef91cc95b2195964a2a8fd5017d33
NeedsCompilation: no
Title: Mapping table for Candida albicans SC5314 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Candida albicans SC5314
source.ver: src/contrib/MeSH.Cal.SC5314.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cbr.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 058e97dc930c6369b1f8b1da55bd5e4a
NeedsCompilation: no
Title: Mapping table for Caenorhabditis briggsae Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Caenorhabditis briggsae
source.ver: src/contrib/MeSH.Cbr.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cel.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 241b930a382a676d4d717c768781da52
NeedsCompilation: no
Title: Mapping table for Caenorhabditis elegans Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Caenorhabditis elegans
source.ver: src/contrib/MeSH.Cel.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: meshes
dependencyCount: 29
Package: MeSH.Cfa.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: b0214dcc44512054750fe8da8f909344
NeedsCompilation: no
Title: Mapping table for Canis familiaris Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Canis familiaris
source.ver: src/contrib/MeSH.Cfa.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cin.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 575eb5682b7b1c4da8294e9f4b932b38
NeedsCompilation: no
Title: Mapping table for Ciona intestinalis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Ciona intestinalis
source.ver: src/contrib/MeSH.Cin.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cja.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 570fa935f87ac911ecd99b781132a626
NeedsCompilation: no
Title: Mapping table for Callithrix jacchus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Callithrix jacchus
source.ver: src/contrib/MeSH.Cja.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cpo.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: e16aaf9d549ee0f7798ca2af93c8262c
NeedsCompilation: no
Title: Mapping table for Cavia porcellus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Cavia porcellus
source.ver: src/contrib/MeSH.Cpo.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Cre.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 1b10475db95516eaa7b5d7f77985cc05
NeedsCompilation: no
Title: Mapping table for Caenorhabditis remani Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Caenorhabditis remani
source.ver: src/contrib/MeSH.Cre.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dan.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 6ae6a5cc608c9628627a16084a1021be
NeedsCompilation: no
Title: Mapping table for Drosophila ananassae Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila ananassae
source.ver: src/contrib/MeSH.Dan.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: c8f86e3a083da705c81b1d3d3697ebbd
NeedsCompilation: no
Title: A set of annotation maps describing the entire MeSH
Description: A set of annotation maps describing the entire MeSH
assembled using data from MeSH.
biocViews: MeSHDb, AnnotationData, FunctionalAnnotation
Author: Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/MeSH.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshes, meshr
dependencyCount: 29
Package: MeSH.Dda.3937.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 749a8970bf6a90a3d48b782869e71d47
NeedsCompilation: no
Title: Mapping table for Dickeya dadantii 3937 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Dickeya dadantii 3937
source.ver: src/contrib/MeSH.Dda.3937.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ddi.AX4.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: d8e36215be5112aa3bc62e042bb8b099
NeedsCompilation: no
Title: Mapping table for Dictyostelium discoideum AX4 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Dictyostelium discoideum AX4
source.ver: src/contrib/MeSH.Ddi.AX4.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Der.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: c42aac3df332aeefd977b8053e264f3d
NeedsCompilation: no
Title: Mapping table for Drosophila eracta Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila eracta
source.ver: src/contrib/MeSH.Der.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dgr.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 740c54b6902a28763a19d3bca822891c
NeedsCompilation: no
Title: Mapping table for Drosophila grimshawi Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila grimshawi
source.ver: src/contrib/MeSH.Dgr.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dme.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: a66b9910418d842eb7790047e03d766f
NeedsCompilation: no
Title: Mapping table for Drosophila melanogaster Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila melanogaster
source.ver: src/contrib/MeSH.Dme.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dmo.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 960b457836c85e66fd572d1a140e31a5
NeedsCompilation: no
Title: Mapping table for Drosophila mojavensis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila mojavensis
source.ver: src/contrib/MeSH.Dmo.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dpe.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 2a48d1f6281d5907e322b34b7b0142a4
NeedsCompilation: no
Title: Mapping table for Drosophila persimilis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila persimilis
source.ver: src/contrib/MeSH.Dpe.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dre.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 72639a8b10e6d97d7a8f72a928c63ff6
NeedsCompilation: no
Title: Mapping table for Danio rerio Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Danio rerio
source.ver: src/contrib/MeSH.Dre.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dse.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: c270be3579def61a610064356d87c8ec
NeedsCompilation: no
Title: Mapping table for Drosophila sechellia Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila sechellia
source.ver: src/contrib/MeSH.Dse.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dsi.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 2c1a4195173f6f51477cb0b1115efb18
NeedsCompilation: no
Title: Mapping table for Drosophila simulans Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila simulans
source.ver: src/contrib/MeSH.Dsi.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dvi.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 5c63cdeaefe3b02962f0800d35c0c315
NeedsCompilation: no
Title: Mapping table for Drosophila virllis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila virllis
source.ver: src/contrib/MeSH.Dvi.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Dya.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 0fd225235abbf0deb02dc6c6c14c0119
NeedsCompilation: no
Title: Mapping table for Drosophila yakuba Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Drosophila yakuba
source.ver: src/contrib/MeSH.Dya.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eca.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 414f443fc6a05a25e434f107d3b0a246
NeedsCompilation: no
Title: Mapping table for Equus caballus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Equus caballus
source.ver: src/contrib/MeSH.Eca.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.55989.eg.db
Version: 1.13.1
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: a2f53577bbe64a0fc4a391a1833098df
NeedsCompilation: no
Title: Mapping table for Escherichia coli 55989 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli 55989
PackageStatus: Deprecated
source.ver: src/contrib/MeSH.Eco.55989.eg.db_1.13.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.ED1a.eg.db
Version: 1.13.1
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 0608e53cea96d9806047c6a5d16578ea
NeedsCompilation: no
Title: Mapping table for Escherichia coli ED1a Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli ED1a
PackageStatus: Deprecated
source.ver: src/contrib/MeSH.Eco.ED1a.eg.db_1.13.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.IAI39.eg.db
Version: 1.13.1
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: e576807a1d69d05acd1a4da3d1639e6d
NeedsCompilation: no
Title: Mapping table for Escherichia coli IAI39 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli IAI39
PackageStatus: Deprecated
source.ver: src/contrib/MeSH.Eco.IAI39.eg.db_1.13.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.K12.MG1655.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 44e990da7ad3e8ccecbaaf4802b79c9b
NeedsCompilation: no
Title: Mapping table for Escherichia coli str K-12 substr. MG1655 Gene
ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli str K-12 substr. MG1655
source.ver: src/contrib/MeSH.Eco.K12.MG1655.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.O157.H7.Sakai.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 63d8151318bb5ca890db189103063d59
NeedsCompilation: no
Title: Mapping table for Escherichia coli O157:H7 Sakai Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli O157:H7 Sakai
source.ver: src/contrib/MeSH.Eco.O157.H7.Sakai.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eco.UMN026.eg.db
Version: 1.13.1
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: a15daa5d287b2b68e796d073a768e5fc
NeedsCompilation: no
Title: Mapping table for Escherichia coli UMN026 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Escherichia coli UMN026
PackageStatus: Deprecated
source.ver: src/contrib/MeSH.Eco.UMN026.eg.db_1.13.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Eqc.eg.db
Version: 1.13.1
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: bc19ea0a1601182fb4ac5016d43d560c
NeedsCompilation: no
Title: Mapping table for Equus caballus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Equus caballus
PackageStatus: Deprecated
source.ver: src/contrib/MeSH.Eqc.eg.db_1.13.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Gga.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: b351838654395da18124f62722b1394a
NeedsCompilation: no
Title: Mapping table for Gallus gallus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Gallus gallus
source.ver: src/contrib/MeSH.Gga.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Gma.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: d47c4a48665e665c89597a5d6fdd0651
NeedsCompilation: no
Title: Mapping table for Glycine max Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Glycine max
source.ver: src/contrib/MeSH.Gma.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Hsa.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: ffe80f70aad73418a5a90e4294cc34cd
NeedsCompilation: no
Title: Mapping table for Homo sapiens Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Homo sapiens
source.ver: src/contrib/MeSH.Hsa.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
suggestsMe: meshes
dependencyCount: 29
Package: MeSH.Laf.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: fa069289cf04fce41f5eaaae5b82ece5
NeedsCompilation: no
Title: Mapping table for Loxodonta africana Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Loxodonta africana
source.ver: src/contrib/MeSH.Laf.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Lma.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 9d2d03cd214ef2a4d8a3239c13f86738
NeedsCompilation: no
Title: Mapping table for Leishmania major strain Friedlin Gene ID to
MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Leishmania major strain Friedlin
source.ver: src/contrib/MeSH.Lma.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mdo.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: d27198a6575de06dba9883c1810b4dcb
NeedsCompilation: no
Title: Mapping table for Monodelphis domestica Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Monodelphis domestica
source.ver: src/contrib/MeSH.Mdo.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mes.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: ca0e6b465d84a3c08853350a0e03646b
NeedsCompilation: no
Title: Mapping table for NA Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: NA
source.ver: src/contrib/MeSH.Mes.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mga.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 07f9cbc2e8ea9f5cfe65f1ad8aba8dd8
NeedsCompilation: no
Title: Mapping table for Meleagris gallopavo Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Meleagris gallopavo
source.ver: src/contrib/MeSH.Mga.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Miy.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 70dabb35b4fe523ca1392b1151b7e484
NeedsCompilation: no
Title: Mapping table for Lotus japonicus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Lotus japonicus
source.ver: src/contrib/MeSH.Miy.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mml.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 3569b294cb4006f7cf9c84f1517d6639
NeedsCompilation: no
Title: Mapping table for Macaca mulatta Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Macaca mulatta
source.ver: src/contrib/MeSH.Mml.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mmu.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 3042d6027cd66fac39a9ce934563ac38
NeedsCompilation: no
Title: Mapping table for Mus musculus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Mus musculus
source.ver: src/contrib/MeSH.Mmu.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Mtr.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: a82380b521a9cfcb86f70bef5fe39afc
NeedsCompilation: no
Title: Mapping table for Medicago truncatula Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Medicago truncatula
source.ver: src/contrib/MeSH.Mtr.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Nle.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 38b2c180e3b0737e3d19ec3d5b60d3a5
NeedsCompilation: no
Title: Mapping table for Nomascus leucogenys Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Nomascus leucogenys
source.ver: src/contrib/MeSH.Nle.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Oan.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 625a6200604cd5ffe7ce258b885d208a
NeedsCompilation: no
Title: Mapping table for Ornithorhynchus anatinus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Ornithorhynchus anatinus
source.ver: src/contrib/MeSH.Oan.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ocu.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: ef39b3df8252704ada22a1f8e4259169
NeedsCompilation: no
Title: Mapping table for Oryctolagus cuniculus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Oryctolagus cuniculus
source.ver: src/contrib/MeSH.Ocu.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Oni.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 7eaa9b83fd6b47ae8a53f06903b103b5
NeedsCompilation: no
Title: Mapping table for Oreochromis niloticus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Oreochromis niloticus
source.ver: src/contrib/MeSH.Oni.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Osa.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: a84192efa9cd0a6171f1cdfa7e1227c1
NeedsCompilation: no
Title: Mapping table for Oryza sativa Japonica Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Oryza sativa Japonica
source.ver: src/contrib/MeSH.Osa.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Pab.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 7a2a9176724cc2646ee60056e94ff73f
NeedsCompilation: no
Title: Mapping table for Pongo abelii Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Pongo abelii
source.ver: src/contrib/MeSH.Pab.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Pae.PAO1.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: e258436a8be015949c43bbfca428d378
NeedsCompilation: no
Title: Mapping table for Pseudomonas aeruginosa PAO1 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Pseudomonas aeruginosa PAO1
source.ver: src/contrib/MeSH.Pae.PAO1.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.PCR.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: b1b28b13a52da7524470235228ab5156
NeedsCompilation: no
Title: A set of annotation maps describing the entire MeSH
Description: A set of PCR (parent-child relationship) in MeSH.
biocViews: MeSHDb, AnnotationData, FunctionalAnnotation
Author: Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
source.ver: src/contrib/MeSH.PCR.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
dependencyCount: 29
Package: MeSH.Pfa.3D7.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 2971586a5fb441a4546f98dbee0c4223
NeedsCompilation: no
Title: Mapping table for Plasmodium falciparum 3D7 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Plasmodium falciparum 3D7
source.ver: src/contrib/MeSH.Pfa.3D7.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Pto.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: d2b62df18d985950ba3742f12833c2cb
NeedsCompilation: no
Title: Mapping table for Pan troglodytes Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Pan troglodytes
source.ver: src/contrib/MeSH.Pto.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ptr.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 4aba3fcbb15b4ec799dc7402a85be4be
NeedsCompilation: no
Title: Mapping table for Populus trichocarpa Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Populus trichocarpa
source.ver: src/contrib/MeSH.Ptr.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Rno.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: eaeac180e79630a31c52780f374fe108
NeedsCompilation: no
Title: Mapping table for Rattus norvegicus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Rattus norvegicus
source.ver: src/contrib/MeSH.Rno.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Sce.S288c.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 7d637ec3d20b9ddeec497ac310274a97
NeedsCompilation: no
Title: Mapping table for Saccharomyces cerevisiae S288c Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Saccharomyces cerevisiae S288c
source.ver: src/contrib/MeSH.Sce.S288c.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Sco.A32.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 529cdb9f1d234a0bbbbb28655eca3d48
NeedsCompilation: no
Title: Mapping table for Streptomyces coelicolor A3(2) Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Streptomyces coelicolor A3(2)
source.ver: src/contrib/MeSH.Sco.A32.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Sil.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: c344ca15836a0ac769deeb84800f69f8
NeedsCompilation: no
Title: Mapping table for Bombyx mori Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Bombyx mori
source.ver: src/contrib/MeSH.Sil.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Spu.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 2505006808d13e510d056e0b03bd1e9e
NeedsCompilation: no
Title: Mapping table for Strongylocentrotus purpuratus Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Strongylocentrotus purpuratus
source.ver: src/contrib/MeSH.Spu.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Ssc.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: ec88121440a60992272eaea6a0ca05b5
NeedsCompilation: no
Title: Mapping table for Sus scrofa Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Sus scrofa
source.ver: src/contrib/MeSH.Ssc.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Syn.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: dc705fd207e544508820f30a11389576
NeedsCompilation: no
Title: Mapping table for Cyanobacteria Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Cyanobacteria
source.ver: src/contrib/MeSH.Syn.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: meshr
dependencyCount: 29
Package: MeSH.Tbr.9274.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: b6dba4966d5b0717f07f6c482a89bf9e
NeedsCompilation: no
Title: Mapping table for Trypanosoma brucei brucei strain 927_4
GUTat10.1 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Trypanosoma brucei brucei strain 927_4 GUTat10.1
source.ver: src/contrib/MeSH.Tbr.9274.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Tgo.ME49.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 96939b9cf67897f386afd414282481f3
NeedsCompilation: no
Title: Mapping table for Toxoplasma gondii ME49 Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Toxoplasma gondii ME49
source.ver: src/contrib/MeSH.Tgo.ME49.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Tgu.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 250f2e516c200373976cfac4f0a54ae0
NeedsCompilation: no
Title: Mapping table for Taeniopygia guttata Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Taeniopygia guttata
source.ver: src/contrib/MeSH.Tgu.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Vvi.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 0419ae80676a6d0859914b7bfde88831
NeedsCompilation: no
Title: Mapping table for Vitis vinifera Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Vitis vinifera
source.ver: src/contrib/MeSH.Vvi.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Xla.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: aea1ec23e34fe32a240ea15bcfc6b54f
NeedsCompilation: no
Title: Mapping table for Xenopus tropicalis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Xenopus tropicalis
source.ver: src/contrib/MeSH.Xla.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Xtr.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 4547b96fa4bddd22556e3719ff354e5d
NeedsCompilation: no
Title: Mapping table for Xenopus tropicalis Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Xenopus tropicalis
source.ver: src/contrib/MeSH.Xtr.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MeSH.Zma.eg.db
Version: 1.15.0
Depends: R (>= 3.0.1), MeSHDbi
Suggests: RUnit, BiocGenerics
License: Artistic-2.0
MD5sum: 1699408d40b54fff81eec1011783ee63
NeedsCompilation: no
Title: Mapping table for Zea mays Gene ID to MeSH
Description: Entrez Gene ID to MeSH ID table.
biocViews: Annotation, AnnotationData, Infrastructure, MeSHDb
Author: Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
organism: Zea mays
source.ver: src/contrib/MeSH.Zma.eg.db_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: metaboliteIDmapping
Version: 0.99.8
Depends: R (>= 4.0.0)
Imports: AnnotationHub
Suggests: magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML,
readxl, stringr, utils, knitr
License: GPL-3
MD5sum: 20a35d4b6e942d9e18589e004c314d18
NeedsCompilation: no
Title: Mapping of Metabolite IDs from Different Sources
Description: The package provides a comprehensive mapping table of nine
different Metabolite ID formats and their common name. The data
has been collected and merged from four publicly available
source, including HMDB, Comptox Dashboard, ChEBI, and the
graphite Bioconductor R package.
biocViews: AnnotationHub, CustomDBSchema, FunctionalAnnotation
Author: Sebastian Canzler [aut, cre]
(<https://orcid.org/0000-0001-7935-9582>)
Maintainer: Sebastian Canzler <sebastian.canzler@ufz.de>
URL: https://github.com/yigbt/metaboliteIDmapping
VignetteBuilder: knitr
source.ver: src/contrib/metaboliteIDmapping_0.99.8.tar.gz
vignettes:
vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html
vignetteTitles: metaboliteIDmapping
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.R
suggestsMe: multiGSEA
dependencyCount: 77
Package: mgu74a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: b746929f272a811061cf03040ec5ea3b
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: ed6e86398e51c7b0ddca4431797ecbc0
NeedsCompilation: no
Title: mgu74acdf
Description: A package containing an environment representing the
MG_U74A.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74a, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7fea6d44856203e6293e0cd9fe1ad066
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74a, Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74av2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ca637dece483fe0a0f752e4fa013d389
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74av2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mgu74av2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74av2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74av2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 35e2abb9fbfd68d90dc32a2faae00c95
NeedsCompilation: no
Title: mgu74av2cdf
Description: A package containing an environment representing the
MG_U74Av2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74av2, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74av2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74av2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: ac540b0e26b14a411740233b02d3e11c
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74av2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74Av2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74av2,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74av2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 9d019b194a64ec8c915514019896708e
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74b) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: a1f0f98f29d34a421622447252113e1e
NeedsCompilation: no
Title: mgu74bcdf
Description: A package containing an environment representing the
MG_U74B.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74b, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 224d606e6fc87592d387dbaabe5cd353
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74b, Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74bv2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: dfc729955539aa0a2a852745a515d413
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74bv2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mgu74bv2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74bv2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74bv2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 45c48d11af03633dc10f8682b7ad74c5
NeedsCompilation: no
Title: mgu74bv2cdf
Description: A package containing an environment representing the
MG_U74Bv2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74bv2, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74bv2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74bv2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: f6a12f88ea3c43a3e885c7e9b3fd03d2
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74bv2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74Bv2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74bv2,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74bv2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74c.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a92c9ac08ce2f543b016268948178776
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74c) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74c
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74c.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74ccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 172e626b0e3072edc65c4efff35fe998
NeedsCompilation: no
Title: mgu74ccdf
Description: A package containing an environment representing the
MG_U74C.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74c, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74ccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74cprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 186992992708f0071fd552ef92b9e25c
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74c
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74C\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74c, Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74cprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74cv2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 3f9ebd44f6dc4b23c009afa95afeb638
NeedsCompilation: no
Title: Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)
Description: Affymetrix Murine Genome U74v2 annotation data (chip
mgu74cv2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mgu74cv2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mgu74cv2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgu74cv2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9ef62b4b28f97770859db24393a07ed5
NeedsCompilation: no
Title: mgu74cv2cdf
Description: A package containing an environment representing the
MG_U74Cv2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mgu74cv2, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74cv2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mgu74cv2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 0373496c817a1c1a153114047cfa7c5b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mgu74cv2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MG-U74Cv2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mgu74cv2,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mgu74cv2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mguatlas5k.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 826093fe7228c08962aff36ad89af28e
NeedsCompilation: no
Title: Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip
mguatlas5k)
Description: Clontech BD Atlas Long Oligos Mouse 5K annotation data
(chip mguatlas5k) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, ClontechChip, Mus_musculus,
mguatlas5k
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Clontech
source.ver: src/contrib/mguatlas5k.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgug4104a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7b1cef094a226257cd657ed8d61e9ef1
NeedsCompilation: no
Title: Agilent annotation data (chip mgug4104a)
Description: Agilent annotation data (chip mgug4104a) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4104a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Agilent
source.ver: src/contrib/mgug4104a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgug4120a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: bb57e8b2efe3d038ec2a0ace0313a4e7
NeedsCompilation: no
Title: Agilent annotation data (chip mgug4120a)
Description: Agilent annotation data (chip mgug4120a) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4120a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Agilent
source.ver: src/contrib/mgug4120a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgug4121a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 6b5cc321d5175356c383b91e30e120b7
NeedsCompilation: no
Title: Agilent Mouse annotation data (chip mgug4121a)
Description: Agilent Mouse annotation data (chip mgug4121a) assembled
using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4121a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Agilent
source.ver: src/contrib/mgug4121a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mgug4122a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 5fcdce909ac1c0ccbf06bf6411f6fe52
NeedsCompilation: no
Title: Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)
Description: Agilent "Mouse Genome, Whole" annotation data (chip
mgug4122a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4122a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Agilent
source.ver: src/contrib/mgug4122a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mi16cod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Mm.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: f3a8e6f45ce5c298c1b1c5b32bf2630c
NeedsCompilation: no
Title: Codelink Mouse Inflammation 16 Bioarray annotation data (chip
mi16cod)
Description: Codelink Mouse Inflammation 16 Bioarray annotation data
(chip mi16cod) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, mi16cod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Mus musculus
manufacturer: Codelink
source.ver: src/contrib/mi16cod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mirbase.db
Version: 1.2.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.22.5)
Imports: methods, AnnotationDbi
License: file LICENSE
MD5sum: 316bc12cee8c2dd9240b7fc30cd1619e
NeedsCompilation: no
Title: miRBase: the microRNA database
Description: miRBase: the microRNA database assembled using data from
miRBase (http://www.mirbase.org/).
biocViews: AnnotationData, FunctionalAnnotation
Author: James F. Reid <reidjf@gmail.com>
Maintainer: James F. Reid <reidjf@gmail.com>
source.ver: src/contrib/mirbase.db_1.2.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
importsMe: Ularcirc
suggestsMe: GenomicFeatures, OrganismDbi, TCGAutils
dependencyCount: 28
Package: miRBaseVersions.db
Version: 1.1.0
Imports: AnnotationDbi, DBI, RSQLite, methods, gtools
Suggests: testthat, knitr, rmarkdown, annotate
License: Artistic-2.0
MD5sum: 9944ab7a474f84a40100c56298f9cb77
NeedsCompilation: no
Title: Collection of mature miRNA names of 22 different miRBase release
versions
Description: Annotation package containing all available miRNA names
from 22 versions (data from http://www.mirbase.org/).
biocViews: Preprocessing, miRNA, AnnotationData
Author: Stefan Haunsberger [aut, cre]
Maintainer: Stefan Haunsberger <stefan.haunsberger@gmail.com>
VignetteBuilder: knitr
source.ver: src/contrib/miRBaseVersions.db_1.1.0.tar.gz
vignettes:
vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.pdf,
vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.html
vignetteTitles: miRBaseVersions.db-vignette.pdf,
miRBaseVersions.db-vignette.html
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: miRNAmeConverter
dependencyCount: 29
Package: mirna102xgaincdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9091a45c2ac15c2de0263743ab334f97
NeedsCompilation: no
Title: mirna102xgaincdf
Description: A package containing an environment representing the
miRNA-1_0_2Xgain.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mirna102xgain,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mirna102xgaincdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mirna10cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 814da2a2e298e132f4db0b2e8ab814be
NeedsCompilation: no
Title: mirna10cdf
Description: A package containing an environment representing the
miRNA-1_0.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mirna10, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mirna10cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ExiMiR
dependencyCount: 28
Package: mirna10probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 8bfa6cdfeee1c563b4881214bd5d4ce1
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mirna10
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
miRNA-1\_0\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mirna10, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mirna10probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mirna20cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 56f7807673ff108427ae7f6bdf85ae1c
NeedsCompilation: no
Title: mirna20cdf
Description: A package containing an environment representing the
miRNA-2_0.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mirna20, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mirna20cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: miRNAtap.db
Version: 0.99.10
Depends: miRNAtap
Imports: AnnotationDbi, DBI, RSQLite, miRNAtap
License: GPL-2
MD5sum: 48010280b68d6f1ddbff3b374132ce0a
NeedsCompilation: no
Title: Data for miRNAtap
Description: This package holds the database for miRNAtap.
biocViews: miRNA, AnnotationData
Author: Maciej Pajak, T. Ian Simpson
Maintainer: Maciej Pajak <m.pajak@sms.ed.ac.uk>
source.ver: src/contrib/miRNAtap.db_0.99.10.tar.gz
vignettes: vignettes/miRNAtap.db/inst/doc/miRNAtap.db.pdf
vignetteTitles: miRNAtap.db
hasREADME: TRUE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/miRNAtap.db/inst/doc/miRNAtap.db.R
importsMe: SpidermiR
suggestsMe: miRNAtap
dependencyCount: 38
Package: mm24kresogen.db
Version: 2.5.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.13.19),
org.Mm.eg.db (>= 2.5.0)
Imports: methods, AnnotationDbi
Suggests: annotate
License: Artistic-2.0
MD5sum: 437f5d4bc225ee500af1ecc2d4da472b
NeedsCompilation: no
Title: RNG_MRC Mouse Pangenomic 24k Set annotation data (chip
mm24kresogen)
Description: RNG_MRC Mouse Pangenomic 24k Set annotation data (chip
mm24kresogen) assembled using data from public repositories
biocViews: AnnotationData, RNG_MRCChip, Mus_musculus, mm24kresogen
Author: AltraBio
Maintainer: Simon de Bernard <simon.debernard@altrabio.com>
organism: Mus musculus
manufacturer: RNG_MRC
source.ver: src/contrib/mm24kresogen.db_2.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MmAgilentDesign026655.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7ef619bd2c74f22ea4f3c2b2c4131fe9
NeedsCompilation: no
Title: Agilent Chips that use Agilent design number 026655 annotation
data (chip MmAgilentDesign026655)
Description: Agilent Chips that use Agilent design number 026655
annotation data (chip MmAgilentDesign026655) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus,
MmAgilentDesign026655
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Agilent
source.ver: src/contrib/MmAgilentDesign026655.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: moe430a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c95b12e1954943ccc347ae57794e1c19
NeedsCompilation: no
Title: Affymetrix Mouse Expression Set 430 annotation data (chip
moe430a)
Description: Affymetrix Mouse Expression Set 430 annotation data (chip
moe430a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
moe430a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/moe430a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: clValid
dependencyCount: 29
Package: moe430acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: b03f1295fc483f0d782a4615e8ca0137
NeedsCompilation: no
Title: moe430acdf
Description: A package containing an environment representing the
MOE430A.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, moe430a, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/moe430acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: moe430aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 0aa83189d04599a65211d1a2f0a51c8f
NeedsCompilation: no
Title: Probe sequence data for microarrays of type moe430a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MOE430A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, moe430a, Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/moe430aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: moe430b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 74027eafdb3815a8310e84ade3a43dff
NeedsCompilation: no
Title: Affymetrix Mouse Expression Set 430 annotation data (chip
moe430b)
Description: Affymetrix Mouse Expression Set 430 annotation data (chip
moe430b) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
moe430b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/moe430b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: moe430bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: b7112dcf8ccfe4e079ca67ff62046f2e
NeedsCompilation: no
Title: moe430bcdf
Description: A package containing an environment representing the
MOE430B.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, moe430b, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/moe430bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: moe430bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 1368e6f4225babe7a693ccd39a3a436a
NeedsCompilation: no
Title: Probe sequence data for microarrays of type moe430b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MOE430B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, moe430b, Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/moe430bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: moex10stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1464d765c3db1bf50a6eb115ae30c74c
NeedsCompilation: no
Title: Affymetrix moex10 annotation data (chip moex10stprobeset)
Description: Affymetrix moex10 annotation data (chip moex10stprobeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
moex10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/moex10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: moex10sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 67253f6ab5cb335049139951ca8064bd
NeedsCompilation: no
Title: Affymetrix moex10 annotation data (chip
moex10sttranscriptcluster)
Description: Affymetrix moex10 annotation data (chip
moex10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
moex10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/moex10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: MoExExonProbesetLocation
Version: 1.15.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17)
License: LGPL
MD5sum: 07eea205fce2a8cf4585fa7e71fb0057
NeedsCompilation: no
Title: Probe sequence data for microarrays of type MoEx
Description: This package was automatically created by package
AnnotationForge version 1.7.17. The exon-level probeset genome
location was retrieved from Netaffx using AffyCompatible.
biocViews: AnnotationData, AffymetrixChip, probe, MoEx, Mus musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Raffaele A. Calogero <raffaele.calogero@unito.it>
source.ver: src/contrib/MoExExonProbesetLocation_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mogene.1.0.st.v1frmavecs
Version: 1.1.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: b46f76903d0f19b85e8fa30347813ff5
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type
mogene.1.0.st.v1frmavecs
Description: This package was created by frmaTools version 1.13.0.
biocViews: AnnotationData, AffymetrixChip, mogene.1.0.st.v1,
Homo_sapiens, FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
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Maintainer: Matthew N. McCall <mmccall@jhsph.edu>
source.ver: src/contrib/mogene.1.0.st.v1frmavecs_1.1.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: mogene10stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: f4859f71d1314d19ead1c4fe20c04e4b
NeedsCompilation: no
Title: Affymetrix mogene10 annotation data (chip mogene10stprobeset)
Description: Affymetrix mogene10 annotation data (chip
mogene10stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene10sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 84966d4986d62c859f61f2725c7b20ea
NeedsCompilation: no
Title: Affymetrix mogene10 annotation data (chip
mogene10sttranscriptcluster)
Description: Affymetrix mogene10 annotation data (chip
mogene10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: compendiumdb
dependencyCount: 29
Package: mogene10stv1cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9c0271f5d6493290fc47f041a8c3f925
NeedsCompilation: no
Title: mogene10stv1cdf
Description: A package containing an environment representing the
MoGene-1_0-st-v1.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mogene10stv1,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mogene10stv1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mogene10stv1probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 63cba1e2a0edee9f201267057fddb0fa
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mogene10stv1
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
MoGene-1\_0-st-v1\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mogene10stv1,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mogene10stv1probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mogene11stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 9bfdd5ede041282555dca8a6a75e7579
NeedsCompilation: no
Title: Affymetrix mogene11 annotation data (chip mogene11stprobeset)
Description: Affymetrix mogene11 annotation data (chip
mogene11stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene11stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene11stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene11sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a3bc3ed82534b5a53bdba583f7a403c7
NeedsCompilation: no
Title: Affymetrix mogene11 annotation data (chip
mogene11sttranscriptcluster)
Description: Affymetrix mogene11 annotation data (chip
mogene11sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene11sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene11sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene20stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 228a1172930e05806cd8b184b326b556
NeedsCompilation: no
Title: Affymetrix mogene20 annotation data (chip mogene20stprobeset)
Description: Affymetrix mogene20 annotation data (chip
mogene20stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene20stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene20stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene20sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c3c6f08d15d9cd3fe850860de0a06213
NeedsCompilation: no
Title: Affymetrix mogene20 annotation data (chip
mogene20sttranscriptcluster)
Description: Affymetrix mogene20 annotation data (chip
mogene20sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene20sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene20sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene21stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 34c2b435725e7dcd29c3d921453216dc
NeedsCompilation: no
Title: Affymetrix mogene21 annotation data (chip mogene21stprobeset)
Description: Affymetrix mogene21 annotation data (chip
mogene21stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene21stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene21stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mogene21sttranscriptcluster.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 0f131b607470652724d7b22ae2af1c7a
NeedsCompilation: no
Title: Affymetrix mogene21 annotation data (chip
mogene21sttranscriptcluster)
Description: Affymetrix mogene21 annotation data (chip
mogene21sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mogene21sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mogene21sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mouse.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 6946095317fb8713d84bda662855d449
NeedsCompilation: no
Title: Base Level Annotation databases for mouse
Description: Base annotation databases for mouse, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Mus_musculus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/mouse.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mouse4302.db
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Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: f959fad0072a265d04a8851db1deed74
NeedsCompilation: no
Title: Affymetrix Mouse Genome 430 2.0 Array annotation data (chip
mouse4302)
Description: Affymetrix Mouse Genome 430 2.0 Array annotation data
(chip mouse4302) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mouse4302
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mouse4302.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: Hiiragi2013
suggestsMe: ChIPXpress, MLP
dependencyCount: 29
Package: mouse4302cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: bda3463613f958de35c58777db05cec2
NeedsCompilation: no
Title: mouse4302cdf
Description: A package containing an environment representing the
Mouse430_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mouse4302, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mouse4302cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ChIPXpress
dependencyCount: 28
Package: mouse4302frmavecs
Version: 1.5.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: ec144b381abbe54d696356c1c124e372
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type mouse4302
Description: This package was created by frmaTools version 1.19.3 and
hgu133ahsentrezgcdf version 19.0.0.
biocViews: AnnotationData, AffymetrixChip, mouse4302, Mus_musculus,
FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
<rafa@jhu.edu>
Maintainer: Matthew N. McCall <mccallm@gmail.com>
source.ver: src/contrib/mouse4302frmavecs_1.5.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ChIPXpress
dependencyCount: 0
Package: mouse4302probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7116787a7db241a545e79e419a8cfa0d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mouse4302
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Mouse430\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mouse4302,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mouse4302probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mouse430a2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 4700ba9bf151277334af4fef9020a197
NeedsCompilation: no
Title: Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip
mouse430a2)
Description: Affymetrix Mouse Genome 430A 2.0 Array annotation data
(chip mouse430a2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mouse430a2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mouse430a2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mouse430a2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 1114c0415d1200bc21ad205e0830b075
NeedsCompilation: no
Title: mouse430a2cdf
Description: A package containing an environment representing the
Mouse430A_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, mouse430a2,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mouse430a2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mouse430a2frmavecs
Version: 1.3.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: 3bcb8de9182bbb8de5d560748eafa0cc
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type mouse430a2
Description: This package was created by frmaTools version 1.19.3 and
hgu133ahsentrezgcdf version 19.0.0.
biocViews: AnnotationData, AffymetrixChip, mouse430a2, Mus_musculus,
FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
<rafa@jhu.edu>
Maintainer: Matthew N. McCall <mccallm@gmail.com>
source.ver: src/contrib/mouse430a2frmavecs_1.3.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: mouse430a2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: bb3c34477d4fcf03a539772011118795
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mouse430a2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Mouse430A\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mouse430a2,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mouse430a2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mouseCHRLOC
Version: 2.1.6
Depends: R(>= 2.7.0)
License: The Artistic License, Version 2.0
MD5sum: 0b81d7391e628cc355af4de3c5585a5f
NeedsCompilation: no
Title: A data package containing annotation data for mouseCHRLOC
Description: Annotation data file for mouseCHRLOC assembled using data
from public data repositories
biocViews: FunctionalAnnotation, Mus_musculus
Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James
W. MacDonald
Maintainer: Biocore Data Team <biocannotation@lists.fhcrc.org>
organism: Mus musculus
source.ver: src/contrib/mouseCHRLOC_2.1.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: mpedbarray.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7bcd1fee1554b6f8844c9bf30b7db4ef
NeedsCompilation: no
Title: FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)
Description: FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Mus_musculus,
mpedbarray
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: FHCRC Nelson Lab
source.ver: src/contrib/mpedbarray.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mta10probeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 80ca03d68b6c9dd51d50122039b2d8ba
NeedsCompilation: no
Title: Affymetrix mta10 annotation data (chip mta10probeset)
Description: Affymetrix mta10 annotation data (chip mta10probeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mta10probeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mta10probeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mta10transcriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Mm.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 04cb3bf18fafd5bef3c4444d32df8bd0
NeedsCompilation: no
Title: Affymetrix mta10 annotation data (chip mta10transcriptcluster)
Description: Affymetrix mta10 annotation data (chip
mta10transcriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mta10transcriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mta10transcriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu11ksuba.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 2ed9098b7efa45430488d4c9f8df0750
NeedsCompilation: no
Title: Affymetrix Murine 11K Set annotation data (chip mu11ksuba)
Description: Affymetrix Murine 11K Set annotation data (chip mu11ksuba)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mu11ksuba
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mu11ksuba.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu11ksubacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 52fb8ac56435775022fb62f40efafd22
NeedsCompilation: no
Title: mu11ksubacdf
Description: A package containing an environment representing the
Mu11KsubA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu11ksuba, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu11ksubacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu11ksubaprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 813cd0750cca6ff0cfb696b83286177e
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mu11ksuba
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Mu11KsubA\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mu11ksuba,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu11ksubaprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu11ksubb.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 44bde347574efd353ae89f41c06ccf76
NeedsCompilation: no
Title: Affymetrix Murine 11K Set annotation data (chip mu11ksubb)
Description: Affymetrix Murine 11K Set annotation data (chip mu11ksubb)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mu11ksubb
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mu11ksubb.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu11ksubbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: f9691ea74e19dfe57bf6cca6ed396947
NeedsCompilation: no
Title: mu11ksubbcdf
Description: A package containing an environment representing the
Mu11KsubB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu11ksubb, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu11ksubbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu11ksubbprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 28d162e18e4e16e3c6db47195d2ea0ac
NeedsCompilation: no
Title: Probe sequence data for microarrays of type mu11ksubb
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Mu11KsubB\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, mu11ksubb,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu11ksubbprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Mu15v1.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e9297b5fe223b046bc65dc6ea0b4376d
NeedsCompilation: no
Title: FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)
Description: FHCRC Genomics Shared Resource Mu15v1 Annotation Data
(Mu15v1) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip,
Mus_musculus, Mu15v1
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: FHCRC Genomics Shared Resource
source.ver: src/contrib/Mu15v1.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu19ksuba.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 668c92eb1b9e2367c5a69dc8d0498cca
NeedsCompilation: no
Title: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksuba)
Description: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksuba) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mu19ksuba
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mu19ksuba.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu19ksubacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 83a9e7a3bac665b655786e66dbd77848
NeedsCompilation: no
Title: mu19ksubacdf
Description: A package containing an environment representing the
Mu19KsubA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksuba, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu19ksubacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu19ksubb.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 54ffae3e05d9fd79caadf51954473b93
NeedsCompilation: no
Title: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksubb)
Description: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksubb) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mu19ksubb
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mu19ksubb.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu19ksubbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 35e5ebcb4cb51950a85c1e3622bb39f0
NeedsCompilation: no
Title: mu19ksubbcdf
Description: A package containing an environment representing the
Mu19KsubB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksubb, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu19ksubbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu19ksubc.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 0cb0abb16337b8acc9dd365f5225856c
NeedsCompilation: no
Title: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksubc)
Description: Affymetrix Murine Genome 19k Set annotation data (chip
mu19ksubc) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
mu19ksubc
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/mu19ksubc.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu19ksubccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: e53ef2716f88022e5e41e2cd857fc2a3
NeedsCompilation: no
Title: mu19ksubccdf
Description: A package containing an environment representing the
Mu19KsubC.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksubc, Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu19ksubccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Mu22v3.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 44aaebe909be9b0108256194c55cf6fb
NeedsCompilation: no
Title: FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)
Description: FHCRC Genomics Shared Resource Mu22v3 Annotation Data
(Mu22v3) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip,
Mus_musculus, Mu22v3
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
manufacturer: FHCRC Genomics Shared Resource
source.ver: src/contrib/Mu22v3.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: mu6500subacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: e72152fc4bae307e3858160e018b7f92
NeedsCompilation: no
Title: mu6500subacdf
Description: A package containing an environment representing the
Mu6500subA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu6500suba,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu6500subacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu6500subbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 5000bea2a018b4b6ec05cda111438bc1
NeedsCompilation: no
Title: mu6500subbcdf
Description: A package containing an environment representing the
Mu6500subB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subb,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu6500subbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu6500subccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: c7cbbe6c70a0a3ae11600ad6c0e540c1
NeedsCompilation: no
Title: mu6500subccdf
Description: A package containing an environment representing the
Mu6500subC.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subc,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu6500subccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: mu6500subdcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: a614674e8bc60fefd8520dd25d45f8d0
NeedsCompilation: no
Title: mu6500subdcdf
Description: A package containing an environment representing the
Mu6500subD.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subd,
Mus_musculus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/mu6500subdcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Mus.musculus
Version: 1.3.1
Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Mm.eg.db,
TxDb.Mmusculus.UCSC.mm10.knownGene
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 1b8defe64c2dd308a88d1ac7a4ce04b9
NeedsCompilation: no
Title: Annotation package for the Mus.musculus object
Description: Contains the Mus.musculus object to access data from
several related annotation packages.
biocViews: AnnotationData, Genetics, OrganismDb, Mus_musculus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/Mus.musculus_1.3.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: RNAseq123
importsMe: biscuiteer
suggestsMe: epivizr, epivizrChart, epivizrData, epivizrStandalone,
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dependencyCount: 96
Package: mwgcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Mm.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 3d6e2af6b05d6e07a212c043dc9d37c4
NeedsCompilation: no
Title: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene
targets) annotation data (chip mwgcod)
Description: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene
targets) annotation data (chip mwgcod) assembled using data
from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, mwgcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Mus musculus
manufacturer: Codelink
source.ver: src/contrib/mwgcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: Norway981.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 85367390919bba9018438585e59fbb87
NeedsCompilation: no
Title: Norway981 http://genome-www5.stanford.edu/ Annotation Data
(Norway981)
Description: Norway981 http://genome-www5.stanford.edu/ Annotation Data
(Norway981) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, Stanford Microarray DatabaseChip,
Homo_sapiens, Norway981
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Stanford Microarray Database
source.ver: src/contrib/Norway981.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: nugohs1a520180.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Hs.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: f83701b35b07e69e1ad503b546bb5eaf
NeedsCompilation: no
Title: Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)
Description: Affymetrix nugohs1a520180 annotation data (chip
nugohs1a520180) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
nugohs1a520180
Author: Philip de Groot
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/nugohs1a520180.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: nugohs1a520180cdf
Version: 3.4.0
Depends: R (>= 2.10), utils
Imports: AnnotationDbi
License: LGPL
MD5sum: aa152658a4a801cc0edb552a98aee841
NeedsCompilation: no
Title: nugohs1a520180cdf
Description: A package containing an environment representing the
NuGO_Hs1a520180.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, nugohs1a520180,
Homo_sapiens
Author: Philip de Groot
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
source.ver: src/contrib/nugohs1a520180cdf_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: nugohs1a520180probe
Version: 3.4.0
Depends: R (>= 2.10), AnnotationDbi (>= 1.11.20)
License: LGPL
MD5sum: 6acf20ac4a799eaae97d0a64426d6ac3
NeedsCompilation: no
Title: Probe sequence data for microarrays of type nugohs1a520180
Description: This package was automatically created by package
AnnotationForge version 1.11.20. The probe sequence data was
obtained from http://www.affymetrix.com.
biocViews: AnnotationData, AffymetrixChip, probe, nugohs1a520180,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
source.ver: src/contrib/nugohs1a520180probe_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: nugomm1a520177.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Mm.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 99f69ea2cbb80a79bedee99e3d726e50
NeedsCompilation: no
Title: Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177)
Description: Affymetrix nugomm1a520177 annotation data (chip
nugomm1a520177) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus,
nugomm1a520177
Author: Philip de Groot
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
organism: Mus musculus
manufacturer: Affymetrix
source.ver: src/contrib/nugomm1a520177.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: nugomm1a520177cdf
Version: 3.4.0
Depends: R (>= 2.10), utils
Imports: AnnotationDbi
License: LGPL
MD5sum: fc60c2018580decaea30f09de55142fb
NeedsCompilation: no
Title: nugomm1a520177cdf
Description: A package containing an environment representing the
NuGO_Mm1a520177.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, nugomm1a520177,
Mus_musculus
Author: Philip de Groot
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
source.ver: src/contrib/nugomm1a520177cdf_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: nugomm1a520177probe
Version: 3.4.0
Depends: R (>= 2.10), AnnotationDbi (>= 1.11.20)
License: LGPL
MD5sum: 7fa974389ad2be6ebda8810496221a9b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type nugomm1a520177
Description: This package was automatically created by package
AnnotationForge version 1.11.20. The probe sequence data was
obtained from http://www.affymetrix.com.
biocViews: AnnotationData, AffymetrixChip, probe, nugomm1a520177,
Mus_musculus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Philip de Groot <Philip.deGroot@wur.nl>
source.ver: src/contrib/nugomm1a520177probe_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: oligoData
Version: 1.8.0
Depends: R (>= 2.15.0), oligo
Suggests: pd.hg.u95av2, pd.huex.1.0.st.v2, pd.mapping50k.xba240,
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pd.hugene.1.0.st.v1
License: LGPL (>= 2)
MD5sum: 9625cfd4b31bb575c4029a0632a7ee12
NeedsCompilation: no
Title: Dataset samples for the oligo package
Description: Dataset samples (Affymetrix: Expression, Gene, Exon, SNP;
NimbleGen: Expression, Tiling) to be used with the oligo
package.
biocViews: ExperimentData
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>
source.ver: src/contrib/oligoData_1.8.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: mimager, oligo
dependencyCount: 56
Package: OperonHumanV3.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 648da5d4d63c6c8327f6035ee09f2b65
NeedsCompilation: no
Title: FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)
Description: FHCRC Nelson Lab OperonHumanV3 Annotation Data
(OperonHumanV3) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens,
OperonHumanV3
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: FHCRC Nelson Lab
source.ver: src/contrib/OperonHumanV3.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: org.Ag.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c1559ce1c713c3cba384e3eb9d99af31
NeedsCompilation: no
Title: Genome wide annotation for Anopheles
Description: Genome wide annotation for Anopheles, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Anopheles_gambiae
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Anopheles gambiae
source.ver: src/contrib/org.Ag.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GAPGOM, geneXtendeR, rrvgo
dependencyCount: 28
Package: org.At.tair.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 6b9bfdf5245d6ea2314ada6818abf16f
NeedsCompilation: no
Title: Genome wide annotation for Arabidopsis
Description: Genome wide annotation for Arabidopsis, primarily based on
mapping using TAIR identifiers.
biocViews: OrgDb, AnnotationData, Arabidopsis_thaliana
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver: src/contrib/org.At.tair.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: ag.db, ath1121501.db
suggestsMe: AnnotationDbi, GAPGOM, rrvgo, topconfects, optCluster
dependencyCount: 28
Package: org.Bt.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1e16dac13d372a7343021d4a0c72bfd4
NeedsCompilation: no
Title: Genome wide annotation for Bovine
Description: Genome wide annotation for Bovine, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Bos_taurus
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/org.Bt.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: bovine.db
suggestsMe: AnnotationFuncs, GAPGOM, geneXtendeR, multiGSEA, rrvgo
dependencyCount: 28
Package: org.Ce.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e131e0197ee882f50e6040c439847bc4
NeedsCompilation: no
Title: Genome wide annotation for Worm
Description: Genome wide annotation for Worm, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Caenorhabditis_elegans
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/org.Ce.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: celegans.db
suggestsMe: ChIPpeakAnno, GAPGOM, geneXtendeR, multiGSEA, rrvgo
dependencyCount: 28
Package: org.Cf.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 40208a2c3bcd32f90bf18eece8efb663
NeedsCompilation: no
Title: Genome wide annotation for Canine
Description: Genome wide annotation for Canine, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Canis_familiaris
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis familiaris
source.ver: src/contrib/org.Cf.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: canine.db, canine2.db
suggestsMe: GAPGOM, geneXtendeR, MLP, multiGSEA, rrvgo
dependencyCount: 28
Package: org.Dm.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: e843bd1c6a234dd0265facc8bce3a61e
NeedsCompilation: no
Title: Genome wide annotation for Fly
Description: Genome wide annotation for Fly, primarily based on mapping
using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Drosophila_melanogaster
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver: src/contrib/org.Dm.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: drosgenome1.db, drosophila2.db, indac.db
importsMe: chipenrich
suggestsMe: annotatr, GAPGOM, GeneAnswers, geneXtendeR,
IntramiRExploreR, multiGSEA, RpsiXML, rrvgo, tximeta,
chipenrich.data
dependencyCount: 28
Package: org.Dr.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 5cab0663334ba63bfe40b5f39042f2a8
NeedsCompilation: no
Title: Genome wide annotation for Zebrafish
Description: Genome wide annotation for Zebrafish, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Danio_rerio
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/org.Dr.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
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dependsOnMe: zebrafish.db
importsMe: chipenrich
suggestsMe: GAPGOM, geneXtendeR, multiGSEA, rrvgo, chipenrich.data,
pagoda2
dependencyCount: 28
Package: org.EcK12.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a36a208f4ec57253e9872dd085162fff
NeedsCompilation: no
Title: Genome wide annotation for E coli strain K12
Description: Genome wide annotation for E coli strain K12, primarily
based on mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Escherichia_coli
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Escherichia coli
source.ver: src/contrib/org.EcK12.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: ecoli2.db
suggestsMe: GAPGOM, qpgraph, rrvgo
dependencyCount: 28
Package: org.EcSakai.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: d0f03e85349081e9d8975664101aca20
NeedsCompilation: no
Title: Genome wide annotation for E coli strain Sakai
Description: Genome wide annotation for E coli strain Sakai, primarily
based on mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Escherichia_coli
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Escherichia coli
source.ver: src/contrib/org.EcSakai.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GAPGOM, rrvgo
dependencyCount: 28
Package: org.Gg.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a98a9e3f2ad1c6fc08e32845cb01c2e7
NeedsCompilation: no
Title: Genome wide annotation for Chicken
Description: Genome wide annotation for Chicken, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Gallus_gallus
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/org.Gg.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: chicken.db
suggestsMe: annotatr, GAPGOM, geneXtendeR, multiGSEA, rrvgo
dependencyCount: 28
Package: org.Hs.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 91e9865ef3dd52ff1cab51cd2572c78b
NeedsCompilation: no
Title: Genome wide annotation for Human
Description: Genome wide annotation for Human, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Homo_sapiens, humanLLMappings
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/org.Hs.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependsOnMe: CoCiteStats, GSReg, KEGGlincs, methyAnalysis, PoTRA,
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dependencyCount: 28
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MD5sum: be4418df75fde5093b84b4f84ab351fa
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Title: Genome wide annotation for Mouse
Description: Genome wide annotation for Mouse, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Mus_musculus, mouseLLMappings
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Mus musculus
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MD5sum: dd6fc15e48687f1325af1f3c76fd8e87
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Title: Genome wide annotation for Rhesus
Description: Genome wide annotation for Rhesus, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Macaca_mulatta
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Macaca mulatta
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suggestsMe: GAPGOM, rrvgo
dependencyCount: 28
Package: org.Mxanthus.db
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License: Artistic-2.0
MD5sum: e493814c41401de383b4f6e0f3d39619
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Title: Genome wide annotation for Myxococcus xanthus DK 1622
Description: Genome wide annotation for Myxococcus xanthus DK 1622,
primarily based on mapping using Gene identifiers.
biocViews: AnnotationHub, OrgDb, AnnotationData
Author: Eduardo Illueca Fernández [aut, cre], Jesualdo Tomás
Fernández-Breis [aut]
Maintainer: Eduardo Illueca Fernández <eduardo.illueca@um.es>
organism: Myxococcus xanthus DK 1622
VignetteBuilder: knitr, rmarkdown
Date/Publication: 2019-10-30
source.ver: src/contrib/org.Mxanthus.db_1.0.27.tar.gz
vignettes: vignettes/org.Mxanthus.db/inst/doc/org.Mxanthus.db.html
vignetteTitles: Genome wide annotation for Myxococcus xanthus DK 1622
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Rfiles: vignettes/org.Mxanthus.db/inst/doc/org.Mxanthus.db.R
dependencyCount: 88
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a20f067cbfe6b62c789634a8c09bc176
NeedsCompilation: no
Title: Genome wide annotation for Malaria
Description: Genome wide annotation for Malaria, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Plasmodium_falciparum
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Plasmodium falciparum
source.ver: src/contrib/org.Pf.plasmo.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
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suggestsMe: GAPGOM, rrvgo
dependencyCount: 28
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: bed422facf67ff3933cbf469ab47bf8a
NeedsCompilation: no
Title: Genome wide annotation for Chimp
Description: Genome wide annotation for Chimp, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Pan_troglodytes
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver: src/contrib/org.Pt.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GAPGOM, geneXtendeR, rrvgo
dependencyCount: 28
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 0716af037463d7b8c80d1bf20b1bcd2a
NeedsCompilation: no
Title: Genome wide annotation for Rat
Description: Genome wide annotation for Rat, primarily based on mapping
using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Rattus_norvegicus, ratLLMappings
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/org.Rn.eg.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependsOnMe: adme16cod.db, clariomsrathttranscriptcluster.db,
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importsMe: chipenrich, EGSEA, geneXtendeR
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dependencyCount: 28
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 8ee611087ae321457fbfb8fec5956f08
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Title: Genome wide annotation for Yeast
Description: Genome wide annotation for Yeast, primarily based on
mapping using ORF identifiers from SGD.
biocViews: OrgDb, AnnotationData, Saccharomyces_cerevisiae
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Saccharomyces cerevisiae
source.ver: src/contrib/org.Sc.sgd.db_3.12.0.tar.gz
hasREADME: FALSE
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dependsOnMe: LiquidAssociation, yeast2.db, ygs98.db, generegulation
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dependencyCount: 28
Package: org.Ss.eg.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: fc6fd8a3f20c15f3eafbd2c21405f118
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Title: Genome wide annotation for Pig
Description: Genome wide annotation for Pig, primarily based on mapping
using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Sus_scrofa
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Sus scrofa
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dependencyCount: 28
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License: Artistic-2.0
MD5sum: c549d21df90e9a0130aa20760d5475eb
NeedsCompilation: no
Title: Genome wide annotation for Xenopus
Description: Genome wide annotation for Xenopus, primarily based on
mapping using Entrez Gene identifiers.
biocViews: OrgDb, AnnotationData, Xenopus_laevis
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Xenopus laevis
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dependsOnMe: xlaevis.db
suggestsMe: GAPGOM, geneXtendeR, multiGSEA, rrvgo
dependencyCount: 28
Package: paeg1acdf
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MD5sum: 73af974112051db0f715518393e84726
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Title: paeg1acdf
Description: A package containing an environment representing the
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biocViews: AnnotationData, AffymetrixChip, cdf, paeg1a,
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Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/paeg1acdf_2.18.0.tar.gz
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dependencyCount: 28
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MD5sum: 493fa1fc7b92a78c8114b65038113c42
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Title: Probe sequence data for microarrays of type paeg1a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
P\_aeg1a\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, paeg1a,
Pseudomonas_aeruginosa
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
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source.ver: src/contrib/paeg1aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 28
Package: PANTHER.db
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Suggests: RUnit,knitr,BiocStyle,rmarkdown
License: Artistic-2.0
MD5sum: 4f8cc91f84bdfdf0bf3128693bee867a
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Title: A set of annotation maps describing the entire PANTHER Gene
Ontology
Description: A set of annotation maps describing the entire Gene
Ontology assembled using data from PANTHER.
biocViews: AnnotationHub, Annotation, Infrastructure
Author: Julius Muller
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VignetteBuilder: knitr
source.ver: src/contrib/PANTHER.db_1.0.10.tar.gz
vignettes: vignettes/PANTHER.db/inst/doc/PANTHER.db.html
vignetteTitles: PANTHER.db: An annotation package to access the PANTHER
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hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/PANTHER.db/inst/doc/PANTHER.db.R
importsMe: gCrisprTools
dependencyCount: 77
Package: PartheenMetaData.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
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Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1c9fd27e13a341b9aba9a235a67ce978
NeedsCompilation: no
Title: PartheenMetaData http://swegene.onk.lu.se Annotation Data
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Description: PartheenMetaData http://swegene.onk.lu.se Annotation Data
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repositories
biocViews: ChipDb, AnnotationData, Swegene DNA Microarray Resource
Centre, Lund, SwedenChip, Homo_sapiens, PartheenMetaData
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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organism: Homo sapiens
manufacturer: Swegene DNA Microarray Resource Centre, Lund, Sweden
source.ver: src/contrib/PartheenMetaData.db_3.2.3.tar.gz
hasREADME: FALSE
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dependencyCount: 29
Package: pd.081229.hg18.promoter.medip.hx1
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License: Artistic-2.0
MD5sum: f3c240fa0d4503e94047be5ee323856b
NeedsCompilation: no
Title: Platform Design Info for NimbleGen
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Description: Platform Design Info for NimbleGen
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biocViews: AnnotationData
Author: Martin Aryee
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source.ver: src/contrib/pd.081229.hg18.promoter.medip.hx1_0.99.4.tar.gz
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dependencyCount: 56
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Title: Platform Design Info for NimbleGen
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Description: Platform Design Info for NimbleGen
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biocViews: AnnotationData
Author: Benilton Carvalho
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Title: Platform Design Info for NimbleGen
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Description: Platform Design Info for NimbleGen
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Title: Platform Design Info for NimbleGen
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dependencyCount: 56
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Title: Platform Design Info for The Manufacturer's Name AG
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Title: Platform Design Info for Affymetrix AraGene-1_0-st
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Title: Platform Design Info for Affymetrix AraGene-1_1-st
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Title: Platform Design Info for The Manufacturer's Name ATH1-121501
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Title: Platform Design Info for The Manufacturer's Name Barley1
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Title: Platform Design Info for Affymetrix BovGene-1_0-st
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biocViews: AnnotationData, oligo
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Title: Platform Design Info for The Manufacturer's Name Bsubtilis
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Title: Platform Design Info for Affymetrix CanGene-1_0-st
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Title: Platform Design Info for Affymetrix CanGene-1_1-st
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Title: Platform Design Info for The Manufacturer's Name Canine
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Title: Platform Design Info for The Manufacturer's Name Celegans
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Author: Benilton Carvalho
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Title: Platform Design Info for NimbleGen charm_hg18_example
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License: Artistic-2.0
MD5sum: af79b6d0910621910e72ea374499e5eb
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Title: Platform Design Info for The Manufacturer's Name Chicken
Description: Platform Design Info for The Manufacturer's Name Chicken
biocViews: AnnotationData, oligo
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Package: pd.chigene.1.0.st
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Title: Platform Design Info for Affymetrix ChiGene-1_0-st
Description: Platform Design Info for Affymetrix ChiGene-1_0-st
biocViews: AnnotationData, oligo
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dependencyCount: 56
Package: pd.chigene.1.1.st
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License: Artistic-2.0
MD5sum: bec602b45961607f5a4571977d54e015
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Title: Platform Design Info for Affymetrix ChiGene-1_1-st
Description: Platform Design Info for Affymetrix ChiGene-1_1-st
biocViews: AnnotationData, oligo
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Package: pd.chogene.2.0.st
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MD5sum: 641718e3d172838185a200bac3d32433
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Title: Platform Design Info for Affymetrix CHOGene-2_0-st
Description: Platform Design Info for Affymetrix CHOGene-2_0-st
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
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dependencyCount: 56
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MD5sum: ed25825e58a514cdde70b961bce9b4d7
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Title: Platform Design Info for Affymetrix CHOGene-2_1-st
Description: Platform Design Info for Affymetrix CHOGene-2_1-st
biocViews: AnnotationData, oligo
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Title: Platform Design Info for The Manufacturer's Name Citrus
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Title: Platform Design Info for Affymetrix Clariom_D_Human
Description: Platform Design Info for Affymetrix Clariom_D_Human
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MD5sum: 797afe8a6a8041453a34ced3cce34884
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Title: Platform Design Info for Affymetrix Clariom_S_Human
Description: Platform Design Info for Affymetrix Clariom_S_Human
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Title: Platform Design Info for Affymetrix Clariom_S_Human_HT
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Package: pd.clariom.s.mouse
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License: Artistic-2.0
MD5sum: e3e4ce2b22a78faf525dd6c0c0b2a42d
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Title: Platform Design Info for Affymetrix Clariom_S_Mouse
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License: Artistic-2.0
MD5sum: 9cb6f77cf9666a0d54e1eacb904fd57c
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Title: Platform Design Info for Affymetrix Clariom_S_Mouse_HT
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MD5sum: be464b3eaea8eb8bdbcca6047fce4dea
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Title: Platform Design Info for Affymetrix Clariom_S_Rat
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MD5sum: be901eb9e8830f3e5bedf154189a3743
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Title: Platform Design Info for Affymetrix Clariom_S_Rat_HT
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Title: Platform Design Info for The Manufacturer's Name Cotton
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Title: Platform Design Info for Affymetrix CynGene-1_0-st
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License: Artistic-2.0
MD5sum: a6217267e3e08a15f70c600918c7d4f6
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Title: Platform Design Info for Affymetrix CynGene-1_1-st
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biocViews: AnnotationData, oligo
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Package: pd.cyrgene.1.0.st
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Title: Platform Design Info for Affymetrix CyRGene-1_0-st
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Package: pd.cyrgene.1.1.st
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MD5sum: dbe3bb580b96aaddcc597de45159320d
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Title: Platform Design Info for Affymetrix CyRGene-1_1-st
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hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
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License: Artistic-2.0
MD5sum: e090383098d6e1062b290889fba065d5
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Title: Platform Design Info for The Manufacturer's Name HG-U133A_tag
Description: Platform Design Info for The Manufacturer's Name
HG-U133A_tag
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u133a.tag_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg.u133b
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: c5eac82ad7480571b9f2b442b4a8faa6
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG-U133B
Description: Platform Design Info for The Manufacturer's Name HG-U133B
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u133b_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg.u219
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: dab073d315af47ff3001c72a6d1e7972
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG-U219
Description: Platform Design Info for The Manufacturer's Name HG-U219
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u219_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
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Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: a9ad7d6a085e0e3ed7623902e7810da0
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95A
Description: Platform Design Info for The Manufacturer's Name HG_U95A
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95a_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: SCAN.UPC
dependencyCount: 56
Package: pd.hg.u95av2
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 3a4182b529bc07ec91277a95b1462468
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95Av2
Description: Platform Design Info for The Manufacturer's Name HG_U95Av2
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95av2_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: oligo, oligoData
dependencyCount: 56
Package: pd.hg.u95b
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: a7f10f91e920e191c5009fac8ca79c24
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95B
Description: Platform Design Info for The Manufacturer's Name HG_U95B
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95b_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg.u95c
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 85655bf7a9ecd7aaa867e05899c5e3e4
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95C
Description: Platform Design Info for The Manufacturer's Name HG_U95C
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95c_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg.u95d
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 946701ecfc9cccb46aaeb57a4d6fe1c5
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95D
Description: Platform Design Info for The Manufacturer's Name HG_U95D
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95d_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg.u95e
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 9295e2fd1b4be6ff58477ea5a5de45ee
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HG_U95E
Description: Platform Design Info for The Manufacturer's Name HG_U95E
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hg.u95e_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hg18.60mer.expr
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: ee8d3813f74edce4e796933aa63999fb
NeedsCompilation: no
Title: Platform Design Info for NimbleGen hg18_60mer_expr
Description: Platform Design Info for NimbleGen hg18_60mer_expr
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>
source.ver: src/contrib/pd.hg18.60mer.expr_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: oligo, oligoData
dependencyCount: 56
Package: pd.ht.hg.u133.plus.pm
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 5b1c3dd0ab3f8b21154982c197512a7c
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name
HT_HG-U133_Plus_PM
Description: Platform Design Info for The Manufacturer's Name
HT_HG-U133_Plus_PM
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.ht.hg.u133.plus.pm_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.ht.hg.u133a
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 80a82f43083f95e1e9f5e2e2da2e288e
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HT_HG-U133A
Description: Platform Design Info for The Manufacturer's Name
HT_HG-U133A
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.ht.hg.u133a_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.ht.mg.430a
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 65ea4fae22d21ad70998ba3ea034dcc0
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name HT_MG-430A
Description: Platform Design Info for The Manufacturer's Name
HT_MG-430A
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.ht.mg.430a_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hta.2.0
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 8e13f85ece49c38da73eaf7b2247f5f0
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HTA-2_0
Description: Platform Design Info for Affymetrix HTA-2_0
biocViews: AnnotationData, oligo
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon@uw.edu>
source.ver: src/contrib/pd.hta.2.0_3.12.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hu6800
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 9a3a3edde6d6f31b9e90dc32aa68875d
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name Hu6800
Description: Platform Design Info for The Manufacturer's Name Hu6800
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hu6800_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.huex.1.0.st.v2
Version: 3.14.1
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: f4c4836c53447890b75b012efbdef3e9
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HuEx-1_0-st-v2
Description: Platform Design Info for Affymetrix HuEx-1_0-st-v2
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.huex.1.0.st.v2_3.14.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: frmaTools, oligo, oligoData
dependencyCount: 56
Package: pd.hugene.1.0.st.v1
Version: 3.14.1
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 8cb24c351aee5bf216180e4b19742506
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HuGene-1_0-st-v1
Description: Platform Design Info for Affymetrix HuGene-1_0-st-v1
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hugene.1.0.st.v1_3.14.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: maEndToEnd
suggestsMe: frmaTools, mimager, oligo, oligoData
dependencyCount: 56
Package: pd.hugene.1.1.st.v1
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 7a17ee4f7d258792be1d21be7d03deb0
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HuGene-1_1-st-v1
Description: Platform Design Info for Affymetrix HuGene-1_1-st-v1
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hugene.1.1.st.v1_3.14.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hugene.2.0.st
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: e484209aa0c2a839c3445d91c1a799ce
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HuGene-2_0-st
Description: Platform Design Info for Affymetrix HuGene-2_0-st
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hugene.2.0.st_3.14.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
Package: pd.hugene.2.1.st
Version: 3.14.1
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 164227f10b87f87059e4ae27b40f5238
NeedsCompilation: no
Title: Platform Design Info for Affymetrix HuGene-2_1-st
Description: Platform Design Info for Affymetrix HuGene-2_1-st
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.hugene.2.1.st_3.14.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 56
Package: pd.maize
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: a1689518c8525d3dfa97e870f90b7a7b
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name Maize
Description: Platform Design Info for The Manufacturer's Name Maize
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.maize_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 56
Package: pd.mapping250k.nsp
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 2786d00e1d621a9c415a599b4afe838b
NeedsCompilation: no
Title: Platform Design Info for Affymetrix Mapping250K_Nsp
Description: Platform Design Info for Affymetrix Mapping250K_Nsp
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.mapping250k.nsp_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: cn.farms, ITALICS, oligoClasses
dependencyCount: 56
Package: pd.mapping250k.sty
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 0db5992855eaf9b8f61f8bc2e57ef347
NeedsCompilation: no
Title: Platform Design Info for Affymetrix Mapping250K_Sty
Description: Platform Design Info for Affymetrix Mapping250K_Sty
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.mapping250k.sty_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: cn.farms, ITALICS, oligoClasses
dependencyCount: 56
Package: pd.mapping50k.hind240
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: 83615dcb01eb381f0c69e07504809094
NeedsCompilation: no
Title: Platform Design Info for Affymetrix Mapping50K_Hind240
Description: Platform Design Info for Affymetrix Mapping50K_Hind240
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.mapping50k.hind240_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: ITALICS, oligoClasses
dependencyCount: 56
Package: pd.mapping50k.xba240
Version: 3.12.0
Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: eb0f9250fe0d7b590ca9938fee88f2e7
NeedsCompilation: no
Title: Platform Design Info for Affymetrix Mapping50K_Xba240
Description: Platform Design Info for Affymetrix Mapping50K_Xba240
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.mapping50k.xba240_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: ITALICS
suggestsMe: oligo, oligoClasses, oligoData
dependencyCount: 56
Package: pd.margene.1.0.st
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Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>=
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License: Artistic-2.0
MD5sum: f670b192e4b453f13bb7cae154b5de42
NeedsCompilation: no
Title: Platform Design Info for Affymetrix MarGene-1_0-st
Description: Platform Design Info for Affymetrix MarGene-1_0-st
biocViews: AnnotationData, oligo
Author: Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
source.ver: src/contrib/pd.margene.1.0.st_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 56
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Title: Platform Design Info for Affymetrix PorGene-1_0-st
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Title: Platform Design Info for Affymetrix PorGene-1_1-st
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Title: Platform Design Info for Affymetrix RabGene-1_0-st
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Title: Platform Design Info for Affymetrix RabGene-1_1-st
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Title: Platform Design Info for The Manufacturer's Name RAE230B
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Title: Platform Design Info for Affymetrix RaEx-1_0-st-v1
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Title: Platform Design Info for Affymetrix RaGene-1_0-st-v1
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Title: Platform Design Info for Affymetrix RaGene-1_1-st-v1
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Title: Platform Design Info for Affymetrix RaGene-2_0-st
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Title: Platform Design Info for Affymetrix RaGene-2_1-st
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Title: Platform Design Info for Affymetrix RCnGene-1_0-st
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Title: Platform Design Info for Affymetrix RCnGene-1_1-st
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Title: Platform Design Info for Affymetrix RheGene-1_1-st
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Title: Platform Design Info for Affymetrix RJpGene-1_0-st
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Title: Platform Design Info for Affymetrix RJpGene-1_1-st
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Title: Platform Design Info for Affymetrix RTA-1_0
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Title: Platform Design Info for Affymetrix RUSGene-1_0-st
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hasNEWS: FALSE
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dependencyCount: 56
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License: Artistic-2.0
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Title: Platform Design Info for Affymetrix RUSGene-1_1-st
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biocViews: AnnotationData, oligo
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hasNEWS: FALSE
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dependencyCount: 56
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License: Artistic-2.0
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Title: Platform Design Info for The Manufacturer's Name S_aureus
Description: Platform Design Info for The Manufacturer's Name S_aureus
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Title: Platform Design Info for The Manufacturer's Name Soybean
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Author: Benilton Carvalho
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hasNEWS: FALSE
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Package: pd.soygene.1.0.st
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License: Artistic-2.0
MD5sum: b264df0648ec35d04f91e0ef8e26ac95
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Title: Platform Design Info for Affymetrix SoyGene-1_0-st
Description: Platform Design Info for Affymetrix SoyGene-1_0-st
biocViews: AnnotationData, oligo
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hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 56
Package: pd.soygene.1.1.st
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License: Artistic-2.0
MD5sum: 4a911a4a4b5de927fe6239e500a2993f
NeedsCompilation: no
Title: Platform Design Info for Affymetrix SoyGene-1_1-st
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Author: Benilton Carvalho
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hasREADME: FALSE
hasNEWS: FALSE
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dependencyCount: 56
Package: pd.sugar.cane
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License: Artistic-2.0
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Title: Platform Design Info for The Manufacturer's Name Sugar_Cane
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Author: Benilton Carvalho
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hasNEWS: FALSE
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dependencyCount: 56
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License: Artistic-2.0
MD5sum: ce78f6ee43d72e017608413dd4d50580
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name Tomato
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License: Artistic-2.0
MD5sum: e3f343e32273667f851e26d7b8a7a5db
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Title: Platform Design Info for The Manufacturer's Name U133_X3P
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dependencyCount: 56
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License: Artistic-2.0
MD5sum: 104a8ac33a9baa25a61f953679795696
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name Vitis_Vinifera
Description: Platform Design Info for The Manufacturer's Name
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dependencyCount: 56
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License: Artistic-2.0
MD5sum: 38a7183c8d3b874cf62391a9e9169bb9
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name wheat
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Package: pd.x.laevis.2
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License: Artistic-2.0
MD5sum: 32416957e3cdc11ad4dbfcd9141ff113
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name X_laevis_2
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dependencyCount: 56
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License: Artistic-2.0
MD5sum: 79a4de91831e4b0153495e12b9c6e8d3
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Title: Platform Design Info for The Manufacturer's Name X_tropicalis
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Author: Benilton Carvalho
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dependencyCount: 56
Package: pd.xenopus.laevis
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License: Artistic-2.0
MD5sum: 6d5c2c9e8e3891770b1c6e9dcd823c0d
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Title: Platform Design Info for The Manufacturer's Name Xenopus_laevis
Description: Platform Design Info for The Manufacturer's Name
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dependencyCount: 56
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License: Artistic-2.0
MD5sum: 780f5139ee9cda46c9e38122538ce129
NeedsCompilation: no
Title: Platform Design Info for The Manufacturer's Name Yeast_2
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dependencyCount: 56
Package: pd.yg.s98
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License: Artistic-2.0
MD5sum: caec3e8f29918f078b2dc7c76f4a74e2
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Title: Platform Design Info for The Manufacturer's Name YG_S98
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dependencyCount: 56
Package: pd.zebgene.1.0.st
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License: Artistic-2.0
MD5sum: 54fcf757b8069e95dd7e2f3ff74ae050
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Title: Platform Design Info for Affymetrix ZebGene-1_0-st
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hasNEWS: FALSE
hasINSTALL: FALSE
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dependencyCount: 56
Package: pd.zebgene.1.1.st
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License: Artistic-2.0
MD5sum: d87028cd9024bc33be518635cf2f48fc
NeedsCompilation: no
Title: Platform Design Info for Affymetrix ZebGene-1_1-st
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source.ver: src/contrib/pd.zebgene.1.1.st_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
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dependencyCount: 56
Package: pd.zebrafish
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License: Artistic-2.0
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Title: Platform Design Info for The Manufacturer's Name Zebrafish
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Author: Benilton Carvalho
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hasINSTALL: FALSE
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dependencyCount: 56
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biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens,
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Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
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manufacturer: FHCRC Nelson Lab
source.ver: src/contrib/pedbarrayv10.db_3.2.3.tar.gz
hasREADME: FALSE
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dependencyCount: 29
Package: pedbarrayv9.db
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License: Artistic-2.0
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Title: FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)
Description: FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)
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biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens,
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Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: FHCRC Nelson Lab
source.ver: src/contrib/pedbarrayv9.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: PFAM.db
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
Suggests: DBI
License: Artistic-2.0
MD5sum: 1a532590fbc1d74f58f8663827b103a4
NeedsCompilation: no
Title: A set of protein ID mappings for PFAM
Description: A set of protein ID mappings for PFAM assembled using data
from public repositories
biocViews: AnnotationData
Author: Marc Carlson, Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua
Zhang, James W. MacDonald
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/PFAM.db_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: safe
dependencyCount: 28
Package: phastCons100way.UCSC.hg19
Version: 3.7.2
Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
License: Artistic-2.0
MD5sum: 65aa706a567f7e328dbba0095f995cf1
NeedsCompilation: no
Title: UCSC phastCons conservation scores for hg19
Description: Store UCSC phastCons conservation scores for the human
genome (hg19) calculated from multiple alignments with other 99
vertebrate species.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/phastCons100way.UCSC.hg19_3.7.2.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: RareVariantVis
suggestsMe: ATACseqQC, GenomicScores, VariantFiltering
dependencyCount: 109
Package: phastCons100way.UCSC.hg38
Version: 3.7.1
Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
License: Artistic-2.0
MD5sum: 878c757f9270b3410d11e4e4a4213c8e
NeedsCompilation: no
Title: UCSC phastCons conservation scores for hg38
Description: Store UCSC phastCons conservation scores for the human
genome (hg38) calculated from multiple alignments with other 99
vertebrate species.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/phastCons100way.UCSC.hg38_3.7.1.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: primirTSS
dependencyCount: 109
Package: phastCons30way.UCSC.hg38
Version: 3.11.1
Depends: GenomicScores, AnnotationHub
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: d00ce5dd1a942a964e131b3536aaa8ec
NeedsCompilation: no
Title: phastCons30way.UCSC.hg38 AnnotationHub Resource Metadata
Description: Store phastCons30way.UCSC.hg38 AnnotationHub Resource
Metadata.
biocViews: AnnotationHub, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
organism: Homo sapiens
VignetteBuilder: knitr
source.ver: src/contrib/phastCons30way.UCSC.hg38_3.11.1.tar.gz
vignettes:
vignettes/phastCons30way.UCSC.hg38/inst/doc/phastCons30way.UCSC.hg38.html
vignetteTitles: phastCons30way.UCSC.hg38 AnnotationHub Resource
Metadata
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles:
vignettes/phastCons30way.UCSC.hg38/inst/doc/phastCons30way.UCSC.hg38.R
dependencyCount: 97
Package: phastCons7way.UCSC.hg38
Version: 3.7.1
Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
License: Artistic-2.0
MD5sum: c2d87446b022c166c1c325ea2aef521d
NeedsCompilation: no
Title: UCSC phastCons conservation scores for hg38
Description: Store UCSC phastCons conservation scores for the human
genome (hg38) calculated from multiple alignments with other 6
vertebrate species.
biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
source.ver: src/contrib/phastCons7way.UCSC.hg38_3.7.1.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 109
Package: pig.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 3292340bd59a3721b5ac71ebc5efe60e
NeedsCompilation: no
Title: Base Level Annotation databases for pig
Description: Base annotation databases for pig, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Sus_scrofa
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver: src/contrib/pig.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: plasmodiumanophelescdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 54c5c326977d6358c40cacf34cb2aca2
NeedsCompilation: no
Title: plasmodiumanophelescdf
Description: A package containing an environment representing the
Plasmodium_Anopheles.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, plasmodiumanopheles,
Plasmodium_falciparum, Anopheles_gambiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/plasmodiumanophelescdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: altcdfenvs
dependencyCount: 28
Package: plasmodiumanophelesprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 281683dab923168c2eedb7b08c528935
NeedsCompilation: no
Title: Probe sequence data for microarrays of type plasmodiumanopheles
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Plasmodium\_Anopheles\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, plasmodiumanopheles,
Plasmodium_falciparum, Anopheles_gambiae
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/plasmodiumanophelesprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: POCRCannotation.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: da1d4dacc5fffb9c5dfea55649974aa5
NeedsCompilation: no
Title: A package containing metadata for POCRC arrays
Description: A package containing metadata for POCRC arrays assembled
using data from public repositories
biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens,
POCRCannotation
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: CUSTOM
source.ver: src/contrib/POCRCannotation.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: PolyPhen.Hsapiens.dbSNP131
Version: 1.0.2
Depends: VariantAnnotation, RSQLite (>= 0.11.0)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 763e9cd4afd97b36f7e659f5454ef61f
NeedsCompilation: no
Title: PolyPhen Predictions for Homo sapiens dbSNP build 131
Description: Database of PolyPhen predictions for Homo sapiens dbSNP
build 131
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Valerie Obenchain
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
organism: Homo sapiens
source.ver: src/contrib/PolyPhen.Hsapiens.dbSNP131_1.0.2.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: variants
importsMe: appreci8R
suggestsMe: VariantAnnotation, VariantFiltering
dependencyCount: 91
Package: poplarcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 556e7f8f6f76436552d8044ef29279cb
NeedsCompilation: no
Title: poplarcdf
Description: A package containing an environment representing the
Poplar.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, poplar, Populus_sp
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/poplarcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: poplarprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 87a608cd86084a06973a88e9b51f799a
NeedsCompilation: no
Title: Probe sequence data for microarrays of type poplar
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Poplar\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, poplar, Populus_sp
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/poplarprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: porcine.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Ss.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a90a6ad39b7fda3f30c23ab315201317
NeedsCompilation: no
Title: Affymetrix porcine annotation data (chip porcine)
Description: Affymetrix porcine annotation data (chip porcine)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Sus_scrofa, porcine
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
manufacturer: Affymetrix
source.ver: src/contrib/porcine.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: porcinecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 32a60b93829c06a935895fab0a469228
NeedsCompilation: no
Title: porcinecdf
Description: A package containing an environment representing the
Porcine.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, porcine, Sus_scrofa
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/porcinecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: porcineprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 5ac483b6329a012d4c9954e3dee8869e
NeedsCompilation: no
Title: Probe sequence data for microarrays of type porcine
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Porcine\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, porcine, Sus_scrofa
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/porcineprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: primeviewcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 71e39a59a5907e9b8a8dba58d36eee50
NeedsCompilation: no
Title: primeviewcdf
Description: A package containing an environment representing the
PrimeView.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, primeview, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/primeviewcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: primeviewprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 87cc56a8da4fb742ab1558ce1d3d26cc
NeedsCompilation: no
Title: Probe sequence data for microarrays of type primeview
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
PrimeView\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, primeview,
Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/primeviewprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: r10kcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Rn.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: 4a7a25fee64294cfb5adccaa6cf28772
NeedsCompilation: no
Title: Codelink UniSet Rat I Bioarray (~10 000 rat gene targets)
annotation data (chip r10kcod)
Description: Codelink UniSet Rat I Bioarray (~10 000 rat gene targets)
annotation data (chip r10kcod) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus,
r10kcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Rattus norvegicus
manufacturer: Codelink
source.ver: src/contrib/r10kcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rae230a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: fb9d6a02ce85cc521c0477a1a6f861f6
NeedsCompilation: no
Title: Affymetrix Rat Expression Set 230 annotation data (chip rae230a)
Description: Affymetrix Rat Expression Set 230 annotation data (chip
rae230a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rae230a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rae230a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotate
dependencyCount: 29
Package: rae230acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 6f2281124e1be164d5fd599e84f6adbc
NeedsCompilation: no
Title: rae230acdf
Description: A package containing an environment representing the
RAE230A.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, rae230a,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rae230acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rae230aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 6f2d77e1d9c1e3afb96ef78b3202bb0b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rae230a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RAE230A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rae230a,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rae230aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotate
dependencyCount: 28
Package: rae230b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 23fb8fd2cf3f178020db9b7f5692a28d
NeedsCompilation: no
Title: Affymetrix Rat Expression Set 230 annotation data (chip rae230b)
Description: Affymetrix Rat Expression Set 230 annotation data (chip
rae230b) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rae230b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rae230b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rae230bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: bd61c17402e9c04be1000c16e0356618
NeedsCompilation: no
Title: rae230bcdf
Description: A package containing an environment representing the
RAE230B.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, rae230b,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rae230bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rae230bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 7bdb3a07e1f00de8ff510a69bdac4c53
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rae230b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RAE230B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rae230b,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rae230bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: raex10stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 9cdc6abb3cf39eb7363fe74a0963c5b7
NeedsCompilation: no
Title: Affymetrix raex10 annotation data (chip raex10stprobeset)
Description: Affymetrix raex10 annotation data (chip raex10stprobeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
raex10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/raex10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: raex10sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 3eb2d97bfffb595e6b23550f4a27a8c3
NeedsCompilation: no
Title: Affymetrix raex10 annotation data (chip
raex10sttranscriptcluster)
Description: Affymetrix raex10 annotation data (chip
raex10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
raex10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/raex10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: RaExExonProbesetLocation
Version: 1.15.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17)
License: LGPL
MD5sum: d547bcd30685495283b32f0f86ecc79b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type RaEx
Description: This package was automatically created by package
AnnotationForge version 1.7.17. The exon-level probeset genome
location was retrieved from Netaffx using AffyCompatible.
biocViews: AnnotationData, AffymetrixChip, probe, RaEx, Rattus
norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Raffaele A. Calogero <raffaele.calogero@unito.it>
source.ver: src/contrib/RaExExonProbesetLocation_1.15.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ragene10stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 7338948d43b2200ca255aeb87cf99f3e
NeedsCompilation: no
Title: Affymetrix ragene10 annotation data (chip ragene10stprobeset)
Description: Affymetrix ragene10 annotation data (chip
ragene10stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene10stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene10stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene10sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 2523540bab5f12e6e5c1e140c1663832
NeedsCompilation: no
Title: Affymetrix ragene10 annotation data (chip
ragene10sttranscriptcluster)
Description: Affymetrix ragene10 annotation data (chip
ragene10sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene10sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene10sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene10stv1cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: df696e9dbf5b3f2761b6a0a5914be058
NeedsCompilation: no
Title: ragene10stv1cdf
Description: A package containing an environment representing the
RaGene-1_0-st-v1.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, ragene10stv1,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ragene10stv1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ragene10stv1probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 94978b6efb075aacf31ccdc8000e40fa
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ragene10stv1
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RaGene-1\_0-st-v1\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ragene10stv1,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ragene10stv1probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ragene11stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 5ce8dfb793afc7307106f3d4872dfeb1
NeedsCompilation: no
Title: Affymetrix ragene11 annotation data (chip ragene11stprobeset)
Description: Affymetrix ragene11 annotation data (chip
ragene11stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene11stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene11stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene11sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 81a645c32105ffb4bfb45eb8bcf13855
NeedsCompilation: no
Title: Affymetrix ragene11 annotation data (chip
ragene11sttranscriptcluster)
Description: Affymetrix ragene11 annotation data (chip
ragene11sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene11sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene11sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene20stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: dd4e8701fd716e8564da2581d52ce1db
NeedsCompilation: no
Title: Affymetrix ragene20 annotation data (chip ragene20stprobeset)
Description: Affymetrix ragene20 annotation data (chip
ragene20stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene20stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene20stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene20sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 79693b35c3837f9e5fe7337ac3e86e1f
NeedsCompilation: no
Title: Affymetrix ragene20 annotation data (chip
ragene20sttranscriptcluster)
Description: Affymetrix ragene20 annotation data (chip
ragene20sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene20sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene20sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene21stprobeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 9a2e1eb46277622a673eb3e11ca14aee
NeedsCompilation: no
Title: Affymetrix ragene21 annotation data (chip ragene21stprobeset)
Description: Affymetrix ragene21 annotation data (chip
ragene21stprobeset) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene21stprobeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene21stprobeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ragene21sttranscriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 45a0cfb35fc78ec28705024a8d091163
NeedsCompilation: no
Title: Affymetrix ragene21 annotation data (chip
ragene21sttranscriptcluster)
Description: Affymetrix ragene21 annotation data (chip
ragene21sttranscriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
ragene21sttranscriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/ragene21sttranscriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rat.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 97ed8fe79ea944dcd04e8db1bf382653
NeedsCompilation: no
Title: Base Level Annotation databases for rat
Description: Base annotation databases for rat, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Rattus_norvegicus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/rat.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rat2302.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: bcd325ab88de497001867a7cae4501cc
NeedsCompilation: no
Title: Affymetrix Rat Genome 230 2.0 Array annotation data (chip
rat2302)
Description: Affymetrix Rat Genome 230 2.0 Array annotation data (chip
rat2302) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rat2302
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rat2302.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rat2302cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: a033730f79a11d45b4cd7e7c520f8052
NeedsCompilation: no
Title: rat2302cdf
Description: A package containing an environment representing the
Rat230_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rat2302,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rat2302cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rat2302frmavecs
Version: 0.99.11
Depends: R (>= 3.6.0)
Imports: affy, frma
Suggests: BiocStyle, knitr, rmarkdown
License: GPL (>= 2)
MD5sum: 44d9f00c2f3806899c6605d1ba274066
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type rat2302rnentrezg
Description: This package was created with the help of frmaTools
version 1.24.0.
biocViews: AnnotationData, AffymetrixChip, rat2302, Rattus_norvegicus,
FRMA, PackageType, probe
Author: Vincenzo Belcastro <vincenzo.belcastro@pmi.com>, Sylvain Gubian
<sylvain.gubian@pmi.com>
Maintainer: Sylvain Gubian <DL.RSupport@pmi.com>
VignetteBuilder: knitr
source.ver: src/contrib/rat2302frmavecs_0.99.11.tar.gz
vignettes:
vignettes/rat2302frmavecs/inst/doc/rat2302frmavecs-vignette.html
vignetteTitles: Vector used by frma for microarrays of type rat2302
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: TRUE
Rfiles: vignettes/rat2302frmavecs/inst/doc/rat2302frmavecs-vignette.R
dependencyCount: 59
Package: rat2302probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: d1d9215e52b9e845cc4d7c902536e0d6
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rat2302
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Rat230\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rat2302,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rat2302probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ratCHRLOC
Version: 2.1.6
Depends: R(>= 2.7.0)
License: The Artistic License, Version 2.0
MD5sum: 6fecff4821a5a47e3bd38a2ff78173d5
NeedsCompilation: no
Title: A data package containing annotation data for ratCHRLOC
Description: Annotation data file for ratCHRLOC assembled using data
from public data repositories
biocViews: FunctionalAnnotation, Rattus_norvegicus
Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James
W. MacDonald
Maintainer: Biocore Data Team <biocannotation@lists.fhcrc.org>
organism: Rattus norvegicus
source.ver: src/contrib/ratCHRLOC_2.1.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: rattoxfxcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 912d0fa424615fcd92773ed174d5efdd
NeedsCompilation: no
Title: rattoxfxcdf
Description: A package containing an environment representing the
RatToxFX.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rattoxfx,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rattoxfxcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rattoxfxprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 202791c72e8c956b9854fa4d9ba67a24
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rattoxfx
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RatToxFX\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rattoxfx,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rattoxfxprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Rattus.norvegicus
Version: 1.3.1
Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Rn.eg.db,
TxDb.Rnorvegicus.UCSC.rn5.refGene
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 5692fdeb0bc7f94e1db35f097cad99a9
NeedsCompilation: no
Title: Annotation package for the Rattus.norvegicus object
Description: Contains the Rattus.norvegicus object to access data from
several related annotation packages.
biocViews: AnnotationData, Genetics, OrganismDb, Rattus_norvegicus
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/Rattus.norvegicus_1.3.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: OrganismDbi
dependencyCount: 96
Package: reactome.db
Version: 1.74.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.33.0)
Imports: methods, AnnotationDbi
Suggests: RSQLite
License: CC BY 4.0
MD5sum: 3d0723e0c54a3e78d6a7b4d4ed0159b3
NeedsCompilation: no
Title: A set of annotation maps for reactome
Description: A set of annotation maps for reactome assembled using data
from reactome
biocViews: AnnotationData, FunctionalAnnotation
Author: Willem Ligtenberg
Maintainer: Willem Ligtenberg <willem@42analytics.eu>
source.ver: src/contrib/reactome.db_1.74.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: attract, bioCancer, famat, methylGSA, ReactomePA, scTensor,
signatureSearch, SMITE, dnapath
suggestsMe: AnnotationDbi, BioCor, ChIPpeakAnno, FGNet, fgsea,
GeneAnswers, MLP, PCAN, safe, simplifyEnrichment, BaseSet,
rliger
dependencyCount: 28
Package: rgu34a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: b8e7fec45ef9e1423cda3171bb12e34c
NeedsCompilation: no
Title: Affymetrix Rat Genome U34 Set annotation data (chip rgu34a)
Description: Affymetrix Rat Genome U34 Set annotation data (chip
rgu34a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rgu34a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rgu34a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgu34acdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: dcfa7ecce00e529f93809759ed837b8d
NeedsCompilation: no
Title: rgu34acdf
Description: A package containing an environment representing the
RG_U34A.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rgu34a,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34acdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rgu34aprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 902aee259a2894fa8713c4bf9266c0e2
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rgu34a
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RG-U34A\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rgu34a,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34aprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rgu34b.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: d2ad468820c1cfbe94297d423237f5bb
NeedsCompilation: no
Title: Affymetrix Rat Genome U34 Set annotation data (chip rgu34b)
Description: Affymetrix Rat Genome U34 Set annotation data (chip
rgu34b) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rgu34b
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rgu34b.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgu34bcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 428b3a39f0d8addd7d863539b8cda6ea
NeedsCompilation: no
Title: rgu34bcdf
Description: A package containing an environment representing the
RG_U34B.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rgu34b,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34bcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rgu34bprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 2d6488309c5e54231a18e2ecf5608bb1
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rgu34b
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RG-U34B\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rgu34b,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34bprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rgu34c.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 59b66663b8d419599d48301661bfa2c3
NeedsCompilation: no
Title: Affymetrix Rat Genome U34 Set annotation data (chip rgu34c)
Description: Affymetrix Rat Genome U34 Set annotation data (chip
rgu34c) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rgu34c
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rgu34c.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgu34ccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 556a7130086004d26095594da31c6410
NeedsCompilation: no
Title: rgu34ccdf
Description: A package containing an environment representing the
RG_U34C.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rgu34c,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34ccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rgu34cprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: d1a6c433acd30b95fa7be89147105b74
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rgu34c
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RG-U34C\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rgu34c,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rgu34cprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rguatlas4k.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 6a360676e08319ec5465c47c758110bd
NeedsCompilation: no
Title: Clontech BD Atlas Long Oligos Rat 4K annotation data (chip
rguatlas4k)
Description: Clontech BD Atlas Long Oligos Rat 4K annotation data (chip
rguatlas4k) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, ClontechChip, Rattus_norvegicus,
rguatlas4k
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Clontech
source.ver: src/contrib/rguatlas4k.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgug4105a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
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Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 3ccf354083ae36a7ae687fb8209c4e5b
NeedsCompilation: no
Title: Agilent annotation data (chip rgug4105a)
Description: Agilent annotation data (chip rgug4105a) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus,
rgug4105a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Agilent
source.ver: src/contrib/rgug4105a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgug4130a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 13643ac109aaf12590a5b6e379609b79
NeedsCompilation: no
Title: Agilent Rat annotation data (chip rgug4130a)
Description: Agilent Rat annotation data (chip rgug4130a) assembled
using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus,
rgug4130a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Agilent
source.ver: src/contrib/rgug4130a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rgug4131a.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1168d4906fb8ce60cbc0fa6cfa3b8ec6
NeedsCompilation: no
Title: Agilent "Rat Genome, Whole" annotation data (chip rgug4131a)
Description: Agilent "Rat Genome, Whole" annotation data (chip
rgug4131a) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus,
rgug4131a
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Agilent
source.ver: src/contrib/rgug4131a.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rhesus.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 5830781159aa3d48f273c8569076622b
NeedsCompilation: no
Title: Base Level Annotation databases for rhesus
Description: Base annotation databases for rhesus, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Macaca_Mulatta
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca Mulatta
source.ver: src/contrib/rhesus.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rhesuscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 994e16da5dd31bc2796d0da40aa2634f
NeedsCompilation: no
Title: rhesuscdf
Description: A package containing an environment representing the
Rhesus.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rhesus, Macaca_mulatta
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rhesuscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rhesusprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 4169c1c997c4c08b027bc7489533e11e
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rhesus
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Rhesus\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rhesus,
Macaca_mulatta
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rhesusprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ri16cod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Rn.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: cd01b429295fdbba21dbe566effacbdd
NeedsCompilation: no
Title: Codelink Rat Inflammation 16 Bioarray annotation data (chip
ri16cod)
Description: Codelink Rat Inflammation 16 Bioarray annotation data
(chip ri16cod) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus,
ri16cod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Rattus norvegicus
manufacturer: Codelink
source.ver: src/contrib/ri16cod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ribosomaldatabaseproject11.5MgDb
Version: 1.00.0
Depends: R (>= 3.5)
Imports: metagenomeFeatures (>= 1.99.9)
License: Artistic-2.0
MD5sum: b50b3dedc5ed906df4f335c80ad072cf
NeedsCompilation: no
Title: Ribosomal Database Project 16S rRNA release 11.5 Annotation Data
Description: Metagenome annotation package with for the Ribosomal
Database Project 16S rRNA Database version 11.5, Bacterial and
Archeal sequences. Contains a MgDb-class object, defined in the
metagenomeFeatures package.
biocViews: AnnotationData, Microbiome, Metagenomics, Sequencing
Author: Nathan D. Olson <nolson@umias.umd.edu>, Joseph Nathaniel
Paulson, Hector Corrada-Bravo
Maintainer: Nathan D. Olson <nolson@umiacs.umd.edu>
URL: https://github.com/HCBravoLab/ribosonaldatabaseproject11.5
BugReports:
https://github.com/HCBravoLab/ribosonaldatabaseproject11.5/issues
source.ver: src/contrib/ribosomaldatabaseproject11.5MgDb_1.00.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 57
Package: ricecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 51db6f51f4adcfb7f4940d07668db8b8
NeedsCompilation: no
Title: ricecdf
Description: A package containing an environment representing the
Rice.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rice, Oryza_sp
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ricecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: riceprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 2fac7746c343546cf30e6d54bc1e2019
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rice
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Rice\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rice, Oryza_sp
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/riceprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: RmiR.Hs.miRNA
Version: 1.0.7
Depends: R (>= 2.7.0)
Imports: AnnotationDbi
Suggests: methods, hgug4112a.db
License: The Artistic License, Version 2.0
MD5sum: 4aedac188382447d9907d2617aa2e8e6
NeedsCompilation: no
Title: Various databases of microRNA Targets
Description: Various databases of microRNA Targets
biocViews: AnnotationData,Homo_sapiens,CustomDBSchema,miRNA
Author: Francesco Favero
Maintainer: Francesco Favero <favero.francesco@gmail.com>
source.ver: src/contrib/RmiR.Hs.miRNA_1.0.7.tar.gz
vignettes: vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.pdf,
vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1a.pdf,
vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1b.pdf,
vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2a.pdf,
vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2b.pdf
vignetteTitles: RmiR.Hs.miRNA Vignette, RmiRdb-fig1a.pdf,
RmiRdb-fig1b.pdf, RmiRdb-fig2a.pdf, RmiRdb-fig2b.pdf
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.R
dependsOnMe: RmiR
dependencyCount: 28
Package: RmiR.hsa
Version: 1.0.5
Depends: R (>= 2.7.0)
Imports: AnnotationDbi
Suggests: methods, hgug4112a.db
License: The Artistic License, Version 2.0
MD5sum: f22a18d1a34d12f8fc4ba3daaf1379fd
NeedsCompilation: no
Title: Various databases of microRNA Targets
Description: Various databases of microRNA Targets
biocViews: AnnotationData, CustomDBSchema, miRNA, Homo_sapiens
Author: Francesco Favero
Maintainer: Francesco Favero <favero.francesco@gmail.com>
source.ver: src/contrib/RmiR.hsa_1.0.5.tar.gz
vignettes: vignettes/RmiR.hsa/inst/doc/RmiR.hsa.pdf,
vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1a.pdf,
vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1b.pdf,
vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2a.pdf,
vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2b.pdf
vignetteTitles: RmiR.hsa Vignette, RmiRdb-fig1a.pdf, RmiRdb-fig1b.pdf,
RmiRdb-fig2a.pdf, RmiRdb-fig2b.pdf
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
Rfiles: vignettes/RmiR.hsa/inst/doc/RmiR.hsa.R
dependencyCount: 28
Package: RnAgilentDesign028282.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 72cafb0f7514a81f462acb3248e21aa9
NeedsCompilation: no
Title: Agilent Chips that use Agilent design number 028282 annotation
data (chip RnAgilentDesign028282)
Description: Agilent Chips that use Agilent design number 028282
annotation data (chip RnAgilentDesign028282) assembled using
data from public repositories
biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus,
RnAgilentDesign028282
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Agilent
source.ver: src/contrib/RnAgilentDesign028282.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rnu34.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: a95920bb41a2f78da82f419b245ad1a9
NeedsCompilation: no
Title: Affymetrix Rat Neurobiology U34 Array annotation data (chip
rnu34)
Description: Affymetrix Rat Neurobiology U34 Array annotation data
(chip rnu34) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rnu34
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rnu34.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rnu34cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 0f2564fc6ac89de4d779faf253f23ce3
NeedsCompilation: no
Title: rnu34cdf
Description: A package containing an environment representing the
RN_U34.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, rnu34,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rnu34cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rnu34probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: c5ef9793a437f2bf990f6e84d31da0de
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rnu34
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RN-U34\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rnu34,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rnu34probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: Roberts2005Annotation.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: fb28aaf1a1e0c81cf936badc674b754a
NeedsCompilation: no
Title: Roberts2005Annotation Annotation Data (Roberts2005Annotation)
Description: Roberts2005Annotation Annotation Data
(Roberts2005Annotation) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, Roberts2005AnnotationChip,
Homo_sapiens, Roberts2005Annotation
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Roberts2005Annotation
source.ver: src/contrib/Roberts2005Annotation.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rta10probeset.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 62d35f5ac75a51c2ac91730fd681d031
NeedsCompilation: no
Title: Affymetrix rta10 annotation data (chip rta10probeset)
Description: Affymetrix rta10 annotation data (chip rta10probeset)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rta10probeset
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rta10probeset.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rta10transcriptcluster.db
Version: 8.7.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.39.4), org.Rn.eg.db
(>= 3.4.2)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c6a854395aec7296ffb7d98534b112f7
NeedsCompilation: no
Title: Affymetrix rta10 annotation data (chip rta10transcriptcluster)
Description: Affymetrix rta10 annotation data (chip
rta10transcriptcluster) assembled using data from public
repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rta10transcriptcluster
Author: James W. MacDonald
Maintainer: Biocore Package Maintainer <maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rta10transcriptcluster.db_8.7.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rtu34.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: c598b5caedc421e104e2e541f396d213
NeedsCompilation: no
Title: Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34)
Description: Affymetrix Rat Toxicology U34 Array annotation data (chip
rtu34) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus,
rtu34
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
manufacturer: Affymetrix
source.ver: src/contrib/rtu34.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: rtu34cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 317abfcca319d01eb14f16efa6d91da1
NeedsCompilation: no
Title: rtu34cdf
Description: A package containing an environment representing the
RT_U34.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, rtu34,
Rattus_norvegicus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rtu34cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rtu34probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 1778d857a61bf181b80b9fcf46ebd2c3
NeedsCompilation: no
Title: Probe sequence data for microarrays of type rtu34
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
RT-U34\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, rtu34,
Rattus_norvegicus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/rtu34probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: rwgcod.db
Version: 3.4.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18),
org.Rn.eg.db (>= 3.2.1)
Imports: methods, AnnotationDbi
Suggests: annotate, RUnit
License: Artistic-2.0
MD5sum: c8d2fa81b6f03c4ee629a0883431e5fd
NeedsCompilation: no
Title: Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets)
annotation data (chip rwgcod)
Description: Codelink Rat Whole Genome Bioarray (~34 000 rat gene
targets) annotation data (chip rwgcod) assembled using data
from public repositories
biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus,
rwgcod
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz@gmail.com>
organism: Rattus norvegicus
manufacturer: Codelink
source.ver: src/contrib/rwgcod.db_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: saureuscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: d01883e4c3dd99f32012e6dbab8cdb8b
NeedsCompilation: no
Title: saureuscdf
Description: A package containing an environment representing the
S_aureus.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, saureus,
Staphylococcus_aureus
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/saureuscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: saureusprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: eb4e91b10a536cbde4ecc08951ddf4d3
NeedsCompilation: no
Title: Probe sequence data for microarrays of type saureus
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
S\_aureus\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, saureus,
Staphylococcus_aureus
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/saureusprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: SHDZ.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 63c4439a272a5cd0c4746e9e53a7bdc7
NeedsCompilation: no
Title: SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)
Description: SHDZ http://genome-www5.stanford.edu/ Annotation Data
(SHDZ) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, Stanford Microarray DatabaseChip,
Homo_sapiens, SHDZ
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Stanford Microarray Database
source.ver: src/contrib/SHDZ.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: SIFT.Hsapiens.dbSNP132
Version: 1.0.2
Depends: VariantAnnotation, RSQLite (>= 0.11.0)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: c374f0bf4c99357cfe99e0b192c00d75
NeedsCompilation: no
Title: SIFT Predictions for Homo sapiens dbSNP build 132
Description: Database of SIFT predictions for Homo sapiens dbSNP build
132
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Valerie Obenchain
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
organism: Homo sapiens
source.ver: src/contrib/SIFT.Hsapiens.dbSNP132_1.0.2.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: VariantAnnotation
dependencyCount: 91
Package: SIFT.Hsapiens.dbSNP137
Version: 1.0.0
Depends: VariantAnnotation (>= 1.9.15), RSQLite (>= 0.11.0)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 3c3e73f826399af5ff368d1aab12cfd1
NeedsCompilation: no
Title: PROVEAN/SIFT Predictions for Homo sapiens dbSNP build 137
Description: Database of PROVEAN/SIFT predictions for Homo sapiens
dbSNP build 137
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Valerie Obenchain
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
organism: Homo sapiens
source.ver: src/contrib/SIFT.Hsapiens.dbSNP137_1.0.0.tar.gz
hasREADME: FALSE
hasNEWS: TRUE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: appreci8R
suggestsMe: VariantAnnotation, VariantFiltering
dependencyCount: 91
Package: silva128.1MgDb
Version: 1.00.0
Depends: R (>= 3.5)
Imports: metagenomeFeatures (>= 1.99.9)
License: Artistic-2.0
MD5sum: f73cc038441a0a166c07582eec9a77b4
NeedsCompilation: no
Title: SILVA SSR rRNA release 128.1 Annotation Data
Description: Metagenome annotation package with for the SILVA SSR rRNA
database release 128.1, Bacterial and Archeal sequences.
Contains a MgDb-class object, defined in the metagenomeFeatures
package.
biocViews: AnnotationData, Microbiome, Metagenomics, Sequencing
Author: Nathan D. Olson <nolson@umias.umd.edu>, Joseph Nathaniel
Paulson, Hector Corrada-Bravo
Maintainer: Nathan D. Olson <nolson@umiacs.umd.edu>
URL: https://github.com/HCBravoLab/silva128.1MgDb
BugReports: https://github.com/HCBravoLab/silva128.1MgDb/issues
source.ver: src/contrib/silva128.1MgDb_1.00.0.tar.gz
hasREADME: TRUE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 57
Package: SNPlocs.Hsapiens.dbSNP.20101109
Version: 0.99.7
Depends: R (>= 2.10), IRanges, GenomicRanges
Imports: methods, S4Vectors, IRanges, GenomicRanges
Suggests: Biostrings, BSgenome (>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
License: Artistic-2.0
MD5sum: d18cef7792978f5827025671b1866230
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 132)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 132. The source data files used for this
package were created by NCBI on 9 November 2010 and contain
SNPs mapped to reference genome GRCh37. WARNING: Note that the
GRCh37 genome is the same as the hg19 genome from UCSC except
for the mitochondrion chromosome. Therefore, the SNPs in this
package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but
this injection will exclude chrM (i.e. nothing will be injected
in that sequence).
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP.20101109_0.99.7.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: VariantAnnotation, ceu1kg
dependencyCount: 17
Package: SNPlocs.Hsapiens.dbSNP.20120608
Version: 0.99.11
Depends: R (>= 2.10), IRanges, GenomicRanges, BSgenome (>= 1.25.6)
Imports: methods, utils, IRanges, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.19)
License: Artistic-2.0
MD5sum: 6f06b9f619994b2a9b0fd780ead2f0cc
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 137)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 137. The source data files used for this
package were created by NCBI on June 7-8, 2012, and contain
SNPs mapped to reference genome GRCh37.p5. WARNING: Note that
the GRCh37.p5 genome is a patched version of GRCh37 but the
patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself
is the same as the hg19 genome from UCSC *except* for the
mitochondrion chromosome. Therefore, the SNPs in this package
can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they will
land at the correct location but this injection will exclude
chrM (i.e. nothing will be injected in that sequence).
IMPORTANT NOTE: This package is deprecated. Please use a
SNPlocs data package based on a more recent dbSNP BUILD instead
(e.g. BUILD 144 or BUILD 149). You can call
BSgenome::available.SNPs() from R to get the list of available
SNPlocs data packages.
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
PackageStatus: Deprecated
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP.20120608_0.99.11.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: motifbreakR
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP141.GRCh38
Version: 0.99.11
Depends: R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges,
BSgenome (>= 1.33.9)
Imports: methods, utils, S4Vectors, IRanges, GenomeInfoDb,
GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.19)
License: Artistic-2.0
MD5sum: 40b55447c33e9d72c2ae8e8fe7f484be
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 141)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 141. The source data files used for this
package were created by NCBI on May 1st, 2014, and contain SNPs
mapped to reference genome GRCh38. Note that these SNPs can be
"injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38. IMPORTANT NOTE: This package is
deprecated. Please use a SNPlocs data package based on a more
recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You
can call BSgenome::available.SNPs() from R to get the list of
available SNPlocs data packages.
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
PackageStatus: Deprecated
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.11.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: genotypeeval, XtraSNPlocs.Hsapiens.dbSNP141.GRCh38
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP142.GRCh37
Version: 0.99.5
Depends: R (>= 2.10), IRanges, GenomeInfoDb, GenomicRanges, BSgenome
(>= 1.25.6)
Imports: methods, utils, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked (>= 1.3.19)
License: Artistic-2.0
MD5sum: 3038e4f766d3e24f5b7286961a03ba35
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 142)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 142. The source data files used for this
package were created by NCBI on October 14, 2014, and contain
SNPs mapped to reference genome GRCh37.p13. WARNING: Note that
the GRCh37.p13 genome is a patched version of GRCh37 but the
patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself
is the same as the hg19 genome from UCSC *except* for the
mitochondrion chromosome. Therefore, the SNPs in this package
can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they will
land at the correct location but this injection will exclude
chrM (i.e. nothing will be injected in that sequence).
biocViews: AnnotationData, Genetics, Homo_sapiens
Author: Herv\'e Pag\`es
Maintainer: Simon Coetzee <simon.coetzee@cshs.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP142.GRCh37_0.99.5.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: motifbreakR
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP144.GRCh37
Version: 0.99.20
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19
License: Artistic-2.0
MD5sum: bd338bb583cacc18f210e871dac79ebf
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 144)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 144. The source data files used for this
package were created by NCBI on May 29-30, 2015, and contain
SNPs mapped to reference genome GRCh37.p13. WARNING: Note that
the GRCh37.p13 genome is a patched version of GRCh37. However
the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37
itself is the same as the hg19 genome from UCSC *except* for
the mitochondrion chromosome. Therefore, the SNPs in this
package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and
they will land at the correct position but this injection will
exclude chrM (i.e. nothing will be injected in that sequence).
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.20.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: eQTL
importsMe: appreci8R
suggestsMe: AllelicImbalance, GenomicScores, GGtools, VariantFiltering,
MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.hs37d5,
MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.hs37d5,
MafDb.gnomAD.r2.1.hs37d5, MafDb.gnomADex.r2.1.hs37d5,
MafDb.TOPMed.freeze5.hg19, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP144.GRCh38
Version: 0.99.20
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
License: Artistic-2.0
MD5sum: 128c95e327adf72ae137fb5ae58270fc
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 144)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 144. The source data files used for this
package were created by NCBI on May 30, 2015, and contain SNPs
mapped to reference genome GRCh38.p2 (a patched version of
GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note
that these SNPs can be "injected" in
BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38.
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: BSgenome, GenomicFeatures,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP149.GRCh38
Version: 0.99.20
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
License: Artistic-2.0
MD5sum: 8cf749a8649a53449066b54160a3745c
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 149)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 149. The source data files used for this
package were created by NCBI between November 8-12, 2016, and
contain SNPs mapped to reference genome GRCh38.p7 (a patched
version of GRCh38 that doesn't alter chromosomes 1-22, X, Y,
MT). Note that these SNPs can be "injected" in
BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38.
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: MafDb.1Kgenomes.phase1.GRCh38,
MafDb.1Kgenomes.phase3.GRCh38, MafDb.ExAC.r1.0.GRCh38,
MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.gnomAD.r2.1.GRCh38,
MafDb.gnomAD.r3.0.GRCh38, MafDb.gnomADex.r2.1.GRCh38,
MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.r3.0.GRCh38
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP150.GRCh38
Version: 0.99.20
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
License: Artistic-2.0
MD5sum: 575a7aaa9125d52ca0634b3ac586c9a7
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 150)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 150. The source data files used for this
package were created by NCBI between March 12-14, 2017, and
contain SNPs mapped to reference genome GRCh38.p7 (a patched
version of GRCh38 that doesn't alter chromosomes 1-22, X, Y,
MT). Note that these SNPs can be "injected" in
BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38.
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: trena
dependencyCount: 41
Package: SNPlocs.Hsapiens.dbSNP151.GRCh38
Version: 0.99.20
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
License: Artistic-2.0
MD5sum: 0c1637530d42b10d3e6b8dead09454e7
NeedsCompilation: no
Title: SNP locations for Homo sapiens (dbSNP Build 151)
Description: SNP locations and alleles for Homo sapiens extracted from
NCBI dbSNP Build 151. The source data files used for this
package were created by NCBI between February 16-22, 2018, and
contain SNPs mapped to reference genome GRCh38.p7 (a patched
version of GRCh38 that doesn't alter chromosomes 1-22, X, Y,
MT). Note that these SNPs can be "injected" in
BSgenome.Hsapiens.NCBI.GRCh38 or in
BSgenome.Hsapiens.UCSC.hg38.
biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
organism: Homo sapiens
source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP151.GRCh38_0.99.20.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: soybeancdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: a18e0ba5dbcf2291bdec91091dc528e6
NeedsCompilation: no
Title: soybeancdf
Description: A package containing an environment representing the
Soybean.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, soybean,
Phytophthora_sojae, Heterodera_glycines
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/soybeancdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: soybeanprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 3057a5c387ff35b6c647c4db27041a13
NeedsCompilation: no
Title: Probe sequence data for microarrays of type soybean
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Soybean\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, soybean,
Phytophthora_sojae, Heterodera_glycines
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/soybeanprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: sugarcanecdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: f66d51868068f83d3693d3cb05be418a
NeedsCompilation: no
Title: sugarcanecdf
Description: A package containing an environment representing the
Sugar_Cane.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, sugarcane,
Saccharum_officinarum
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/sugarcanecdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: sugarcaneprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 66c101ac73e9235d258b9f996c42778e
NeedsCompilation: no
Title: Probe sequence data for microarrays of type sugarcane
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Sugar\_Cane\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, sugarcane,
Saccharum_officinarum
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/sugarcaneprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: targetscan.Hs.eg.db
Version: 0.6.1
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3)
Imports: methods, AnnotationDbi
License: file LICENSE
License_restricts_use: no
MD5sum: d10569315400f6c1b95ad2688632b6de
NeedsCompilation: no
Title: TargetScan miRNA target predictions for human
Description: TargetScan miRNA target predictions for human assembled
using data from the TargetScan website. TargetScan predicts
biological targets of miRNAs by searching for the presence of
conserved 8mer and 7mer sites that match the seed region of
each miRNA. Also identified are sites with mismatches in the
seed region that are compensated by conserved 3' pairing. In
mammals, predictions are ranked based on the predicted efficacy
of targeting as calculated using the context scores of the
sites.
biocViews: AnnotationData, FunctionalAnnotation
Author: Gabor Csardi <Gabor.Csardi@unil.ch>
Maintainer: James F. Reid <james.reid@ifom-ieo-campus.it>
source.ver: src/contrib/targetscan.Hs.eg.db_0.6.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
suggestsMe: BioCor, eisa, isomiRs
dependencyCount: 28
Package: targetscan.Mm.eg.db
Version: 0.6.1
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3)
Imports: methods, AnnotationDbi
License: file LICENSE
License_restricts_use: no
MD5sum: 1830815c9d1383739f1ff152da0508c5
NeedsCompilation: no
Title: TargetScan miRNA target predictions for mouse
Description: TargetScan miRNA target predictions for mouse assembled
using data from the TargetScan website. TargetScan predicts
biological targets of miRNAs by searching for the presence of
conserved 8mer and 7mer sites that match the seed region of
each miRNA. Also identified are sites with mismatches in the
seed region that are compensated by conserved 3' pairing. In
mammals, predictions are ranked based on the predicted efficacy
of targeting as calculated using the context scores of the
sites.
biocViews: AnnotationData, FunctionalAnnotation
Author: Gabor Csardi <Gabor.Csardi@unil.ch>
Maintainer: James F. Reid <james.reid@ifom-ieo-campus.it>
source.ver: src/contrib/targetscan.Mm.eg.db_0.6.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: TRUE
dependencyCount: 28
Package: test1cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 8c94708b49ccc7bbf127485155970b9b
NeedsCompilation: no
Title: test1cdf
Description: A package containing an environment representing the
Test1.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, test1, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/test1cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: test2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 0d1c20d6450dfc83d62214be9dc46b5f
NeedsCompilation: no
Title: test2cdf
Description: A package containing an environment representing the
Test2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, test2, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/test2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: test3cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9904e7fa6599f68400a9b77d0caa159a
NeedsCompilation: no
Title: test3cdf
Description: A package containing an environment representing the
Test3.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, test3, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/test3cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: AffyExpress
dependencyCount: 28
Package: test3probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: ffcbfee4e5c486fd03b2b9b64820340c
NeedsCompilation: no
Title: Probe sequence data for microarrays of type test3
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Test3\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, test3, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/test3probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: tomatocdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 200efc0637788d4bd3263fc9183c1aa6
NeedsCompilation: no
Title: tomatocdf
Description: A package containing an environment representing the
Tomato.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, tomato,
Solanum_lycopersicum
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/tomatocdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: tomatoprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 72020469f35c19399fd0be9eaffd8e77
NeedsCompilation: no
Title: Probe sequence data for microarrays of type tomato
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Tomato\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, tomato,
Solanum_lycopersicum
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/tomatoprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: TxDb.Athaliana.BioMart.plantsmart22
Version: 3.0.1
Depends: GenomicFeatures (>= 1.17.17)
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 3bab54295e300fedba99eef521220e50
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from BioMart by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver:
src/contrib/TxDb.Athaliana.BioMart.plantsmart22_3.0.1.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: annotation
suggestsMe: GenomicRanges
dependencyCount: 89
Package: TxDb.Athaliana.BioMart.plantsmart25
Version: 3.1.3
Depends: GenomicFeatures (>= 1.19.32)
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: eb007c07317b9717c76949e5ed999978
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from BioMart by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver:
src/contrib/TxDb.Athaliana.BioMart.plantsmart25_3.1.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Athaliana.BioMart.plantsmart28
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 9ed52284f01e08fc382db179b544bb17
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from BioMart by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Arabidopsis thaliana
source.ver:
src/contrib/TxDb.Athaliana.BioMart.plantsmart28_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Btaurus.UCSC.bosTau8.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 2112b91fbecabf9c89d1b0a48d88ce03
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Bos_taurus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/TxDb.Btaurus.UCSC.bosTau8.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Btaurus.UCSC.bosTau9.refGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.6)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: fe443d123b0b788e1e450f4e60036788
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Bos_taurus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Bos taurus
source.ver: src/contrib/TxDb.Btaurus.UCSC.bosTau9.refGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Celegans.UCSC.ce11.ensGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 507cd3268f0a3fe18c4f56b6ead524be
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/TxDb.Celegans.UCSC.ce11.ensGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomicFeatures
dependencyCount: 89
Package: TxDb.Celegans.UCSC.ce11.refGene
Version: 3.4.6
Depends: GenomicFeatures (>= 1.35.11)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 3765169432e745aff5e85afd239066ca
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/TxDb.Celegans.UCSC.ce11.refGene_3.4.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Celegans.UCSC.ce6.ensGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 215c2edd440a3df8229fe6a75b431aa8
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/TxDb.Celegans.UCSC.ce6.ensGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ChIPQC
suggestsMe: BSgenome.Celegans.UCSC.ce6
dependencyCount: 89
Package: TxDb.Cfamiliaris.UCSC.canFam3.refGene
Version: 3.11.0
Depends: GenomicFeatures (>= 1.39.7)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: bf6af84c14a30ad5d01f3678246b1180
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Canis_familiaris
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Canis familiaris
source.ver:
src/contrib/TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.11.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Dmelanogaster.UCSC.dm3.ensGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 46b7ffe0c516edf8a2a3b5d78e0d8b67
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Drosophila_melanogaster
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver:
src/contrib/TxDb.Dmelanogaster.UCSC.dm3.ensGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ChIPQC, consensusDE
suggestsMe: annotatr, FourCSeq, GenomeInfoDb, GenomicAlignments,
GenomicFeatures, GenomicRanges, Rsamtools,
BSgenome.Dmelanogaster.UCSC.dm3, chipenrich.data
dependencyCount: 89
Package: TxDb.Dmelanogaster.UCSC.dm6.ensGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: bec18a1fb2768347e907e3171d5332ca
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Drosophila_melanogaster
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Drosophila melanogaster
source.ver:
src/contrib/TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: icetea
suggestsMe: annotatr, chipenrich.data
dependencyCount: 89
Package: TxDb.Drerio.UCSC.danRer10.refGene
Version: 3.4.6
Depends: GenomicFeatures (>= 1.35.11)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: fef9bbec3809e1b69991516988f146fb
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Danio_rerio
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/TxDb.Drerio.UCSC.danRer10.refGene_3.4.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: CNEr, chipenrich.data
dependencyCount: 89
Package: TxDb.Drerio.UCSC.danRer11.refGene
Version: 3.4.6
Depends: GenomicFeatures (>= 1.35.11)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 3d4ded4cec068a807b8b86b31389b677
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Danio_rerio
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/TxDb.Drerio.UCSC.danRer11.refGene_3.4.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Ggallus.UCSC.galGal4.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: d50eb467227cd9077a7a690ae6934d11
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal4.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Ggallus.UCSC.galGal5.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 0df53cd4f8e29705df75867a427de56e
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal5.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotatr
dependencyCount: 89
Package: TxDb.Ggallus.UCSC.galGal6.refGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.6)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 4d81026ecb786abf1fe0cb548238214c
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Gallus gallus
source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal6.refGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Hsapiens.BioMart.igis
Version: 2.3.2
Depends: GenomicFeatures (>= 1.17.22)
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: 75b793928d29bcd3f069b5986bc2cfae
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from BioMart by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: person
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
organism: Homo sapiens
source.ver: src/contrib/TxDb.Hsapiens.BioMart.igis_2.3.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Hsapiens.UCSC.hg18.knownGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: e8b32a672e87345c72bb30be73d1e2d6
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg18.knownGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: FDb.InfiniumMethylation.hg18
importsMe: ChIPQC
suggestsMe: BiocOncoTK, CINdex, methylPipe, Rsamtools, TCGAutils,
BSgenome.Hsapiens.UCSC.hg18
dependencyCount: 89
Package: TxDb.Hsapiens.UCSC.hg19.knownGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 61be88a81433958571b57d0952be48a0
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: chimera, FunciSNP, FDb.InfiniumMethylation.hg19,
Homo.sapiens, annotation, variants
importsMe: ALPS, appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, HiLDA,
musicatk, nearBynding, RareVariantVis, UMI4Cats, uncoverappLib,
cinaR, driveR
suggestsMe: AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC,
beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase,
bumphunter, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek,
derfinder, derfinderPlot, esATAC, FRASER, GA4GHclient,
GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments,
GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio,
gmapR, gQTLstats, groHMM, GUIDEseq, gwascat, HTSeqGenie, InPAS,
karyoploteR, MAST, methyAnalysis, MutationalPatterns, OUTRIDER,
pageRank, PureCN, R3CPET, regionReport, RiboProfiling,
rtracklayer, SGSeq, SigFuge, SplicingGraphs,
SummarizedExperiment, TCGAutils, TFEA.ChIP, trackViewer,
transcriptR, tximport, VariantAnnotation, VariantFiltering,
cgdv17, chipenrich.data, Mega2R, pulseTD
dependencyCount: 89
Package: TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: a0d61cd90639c40b3d0bb6bdb043cf12
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver:
src/contrib/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: GenomicFeatures
dependencyCount: 89
Package: TxDb.Hsapiens.UCSC.hg38.knownGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.4)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 17459682a41a93c8ea69b029d5296db1
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg38.knownGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: annotation
importsMe: ALPS, musicatk, nearBynding, strandCheckR, uncoverappLib,
cinaR
suggestsMe: annotatr, bambu, BSgenome, BUSpaRse, ChIPpeakAnno, EpiTxDb,
geneAttribution, GenomicFeatures, genotypeeval, GenVisR, ideal,
Organism.dplyr, podkat, scmeth, Ularcirc, wiggleplotr,
chipenrich.data
dependencyCount: 89
Package: TxDb.Mmulatta.UCSC.rheMac10.refGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.6)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: f64468a97b99dfea57e1d6d4b2aa1f7a
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
source.ver:
src/contrib/TxDb.Mmulatta.UCSC.rheMac10.refGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Mmulatta.UCSC.rheMac3.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: db84a9e85d613635d74002f11df41e1f
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
source.ver:
src/contrib/TxDb.Mmulatta.UCSC.rheMac3.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Mmulatta.UCSC.rheMac8.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 8437e0a05ffd28b667c7b740e0db68a7
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Macaca mulatta
source.ver:
src/contrib/TxDb.Mmulatta.UCSC.rheMac8.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Mmusculus.UCSC.mm10.ensGene
Version: 3.4.0
Depends: GenomicFeatures (>= 1.25.17)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 88d65b714d1f86b456aee2b8524e9d84
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Mus_musculus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: annotation
suggestsMe: Organism.dplyr
dependencyCount: 89
Package: TxDb.Mmusculus.UCSC.mm10.knownGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.4)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 129b610bf05ec77451731196baa55bcc
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Mus_musculus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver:
src/contrib/TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: Mus.musculus
importsMe: ChIPQC, cinaR
suggestsMe: annotatr, BSgenome, csaw, epivizrData, GenomicFeatures,
GenomicRanges, InPAS, karyoploteR, multicrispr,
BSgenome.Mmusculus.UCSC.mm10, chipenrich.data, chipseqDB,
csawUsersGuide
dependencyCount: 89
Package: TxDb.Mmusculus.UCSC.mm39.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 2525799b85e0a52bf274ab5eed51cd84
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Mus_musculus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm39.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Mmusculus.UCSC.mm9.knownGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: cb72af039b011033477363bda8ed9104
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Mus_musculus
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Mus musculus
source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ChIPQC, CompGO, INSPEcT, Rmmquant
suggestsMe: annotatr, CAGEfightR, chipseq, compEpiTools, ggbio,
BSgenome.Mmusculus.UCSC.mm9, chipenrich.data, CAGEWorkflow
dependencyCount: 89
Package: TxDb.Ptroglodytes.UCSC.panTro4.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 9bdd3ba81561550f50250368d7d52eaa
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver:
src/contrib/TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Ptroglodytes.UCSC.panTro5.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 76ee1d253d1c8e54c12e8d5b9db93303
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver:
src/contrib/TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Ptroglodytes.UCSC.panTro6.refGene
Version: 3.10.0
Depends: GenomicFeatures (>= 1.37.6)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 48a88973fe0e5117cadd5c816a46e6e9
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Pan troglodytes
source.ver:
src/contrib/TxDb.Ptroglodytes.UCSC.panTro6.refGene_3.10.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Rnorvegicus.BioMart.igis
Version: 2.3.2
Depends: GenomicFeatures (>= 1.17.22)
Imports: GenomicFeatures, AnnotationDbi
License: Artistic-2.0
MD5sum: eaf695f63cd021074d68c76d148cdfb7
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from BioMart by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus
Author: Gabriel Becker
Maintainer: Gabriel Becker <gabriel.becker@gene.com>
organism: Rattus norvegicus
source.ver: src/contrib/TxDb.Rnorvegicus.BioMart.igis_2.3.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Rnorvegicus.UCSC.rn4.ensGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 6bf2ebc522c2828c036e52b2028792c1
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn4.ensGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: ChIPQC
suggestsMe: annotatr, BSgenome.Rnorvegicus.UCSC.rn4, chipenrich.data
dependencyCount: 89
Package: TxDb.Rnorvegicus.UCSC.rn5.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 8a93a15b37bf73e5c529c976c4561537
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn5.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: Rattus.norvegicus
suggestsMe: annotatr, BSgenome.Rnorvegicus.UCSC.rn5, chipenrich.data
dependencyCount: 89
Package: TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 6660ee000fbc956541728c6dadf1fca7
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver:
src/contrib/TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Rnorvegicus.UCSC.rn6.refGene
Version: 3.4.6
Depends: GenomicFeatures (>= 1.35.11)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: ea525daa75bcf165eb24f6e93f4dbf6c
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Rattus norvegicus
source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.6.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: annotatr, chipenrich.data
dependencyCount: 89
Package: TxDb.Scerevisiae.UCSC.sacCer2.sgdGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 8ce83ef2ba6cfc69f9b4435a0a047819
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Saccharomyces_cerevisiae
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver:
src/contrib/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Scerevisiae.UCSC.sacCer3.sgdGene
Version: 3.2.2
Depends: GenomicFeatures (>= 1.21.30)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: afb23b3265730b9e59c2f07ab37cc3a0
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Saccharomyces_cerevisiae
Author: Marc Carlson, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver:
src/contrib/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_3.2.2.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependsOnMe: generegulation
suggestsMe: VplotR
dependencyCount: 89
Package: TxDb.Sscrofa.UCSC.susScr11.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: a6c5a2c402ad904a2f55099e391d18de
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Sus_scrofa
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver:
src/contrib/TxDb.Sscrofa.UCSC.susScr11.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: TxDb.Sscrofa.UCSC.susScr3.refGene
Version: 3.12.0
Depends: GenomicFeatures (>= 1.41.3)
Imports: AnnotationDbi
License: Artistic-2.0
MD5sum: 981602dc706e545d5acdf7590e222ca7
NeedsCompilation: no
Title: Annotation package for TxDb object(s)
Description: Exposes an annotation databases generated from UCSC by
exposing these as TxDb objects
biocViews: AnnotationData, Genetics, TxDb, Sus_scrofa
Author: Bioconductor Core Team, Bioconductor Package Maintainer
<maintainer@bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Sus scrofa
source.ver: src/contrib/TxDb.Sscrofa.UCSC.susScr3.refGene_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 89
Package: u133aaofav2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 716483ddb6664b8b7f0c58cd21136e8b
NeedsCompilation: no
Title: u133aaofav2cdf
Description: A package containing an environment representing the
U133AAofAv2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, u133aaofav2,
Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/u133aaofav2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: u133x3p.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 1a36a09dc64b94728bf6ac75600b40c6
NeedsCompilation: no
Title: Affymetrix Human X3P Array annotation data (chip u133x3p)
Description: Affymetrix Human X3P Array annotation data (chip u133x3p)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens,
u133x3p
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Homo sapiens
manufacturer: Affymetrix
source.ver: src/contrib/u133x3p.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: u133x3pcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: ee4e62041bc8c63813e8cf8400ece2f3
NeedsCompilation: no
Title: u133x3pcdf
Description: A package containing an environment representing the
U133_X3P.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, u133x3p, Homo_sapiens
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/u133x3pcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: u133x3pprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 81e2b00985688160805147bef0c638be
NeedsCompilation: no
Title: Probe sequence data for microarrays of type u133x3p
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
U133\_X3P\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, u133x3p, Homo_sapiens
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/u133x3pprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: vitisviniferacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 8eb491f3ffa3ff0814f5c155787ae160
NeedsCompilation: no
Title: vitisviniferacdf
Description: A package containing an environment representing the
Vitis_Vinifera.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, vitisvinifera,
Vitis_vinifera
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/vitisviniferacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: vitisviniferaprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 386c0d5e37896d073ac20970e88b3160
NeedsCompilation: no
Title: Probe sequence data for microarrays of type vitisvinifera
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Vitis\_Vinifera\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, vitisvinifera,
Vitis_vinifera
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/vitisviniferaprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: wheatcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 0abeeeb9700b8d93a1a83769bdd8480f
NeedsCompilation: no
Title: wheatcdf
Description: A package containing an environment representing the
wheat.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, wheat, Triticum_sp,
Aegilops_tauschii
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/wheatcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: wheatprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: b602d5050239850515be9dce12286360
NeedsCompilation: no
Title: Probe sequence data for microarrays of type wheat
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
wheat\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, wheat, Triticum_sp,
Aegilops_tauschii
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/wheatprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: worm.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: b9f9e0491f92959a63a5af100f57175f
NeedsCompilation: no
Title: Base Level Annotation databases for worm
Description: Base annotation databases for worm, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Caenorhabditis_elegans
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Caenorhabditis elegans
source.ver: src/contrib/worm.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xenopus.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: 0332744e0a061ff05e293e1a3c720afb
NeedsCompilation: no
Title: Base Level Annotation databases for xenopus
Description: Base annotation databases for xenopus, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Xenopus_laevis
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Xenopus laevis
source.ver: src/contrib/xenopus.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xenopuslaeviscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9d09ff76471ae60faf71090e0638f240
NeedsCompilation: no
Title: xenopuslaeviscdf
Description: A package containing an environment representing the
Xenopus_laevis.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, xenopuslaevis,
Xenopis_laevis
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xenopuslaeviscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xenopuslaevisprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 06a25268a5ab57bddf28bbb364ea977b
NeedsCompilation: no
Title: Probe sequence data for microarrays of type xenopuslaevis
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Xenopus\_laevis\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, xenopuslaevis,
Xenopis_laevis
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xenopuslaevisprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xlaevis.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Xl.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: deaffe47b4ee48a7edb159d8104dc241
NeedsCompilation: no
Title: Affymetrix Xenopus laevis annotation data (chip xlaevis)
Description: Affymetrix Xenopus laevis annotation data (chip xlaevis)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Xenopus_laevis,
xlaevis
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Xenopus laevis
manufacturer: Affymetrix
source.ver: src/contrib/xlaevis.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: xlaevis2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 9e4a80d66397299b4e66a8d6715ca4aa
NeedsCompilation: no
Title: xlaevis2cdf
Description: A package containing an environment representing the
X_laevis_2.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, xlaevis2,
Xenopis_tropicalis
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xlaevis2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xlaevis2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: d86f8a05e106eb3123435da233ff851d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type xlaevis2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
X\_laevis\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, xlaevis2,
Xenopis_laevis
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xlaevis2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: XtraSNPlocs.Hsapiens.dbSNP141.GRCh38
Version: 0.99.12
Depends: R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges,
BSgenome (>= 1.35.5)
Imports: methods, utils, S4Vectors, IRanges, GenomeInfoDb,
GenomicRanges, BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP141.GRCh38,
BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.19)
License: Artistic-2.0
MD5sum: 2b9d4036b9baff400a811fd69c910cff
NeedsCompilation: no
Title: Extra SNP locations for Homo sapiens (dbSNP Build 141)
Description: Extra SNP locations and alleles for Homo sapiens extracted
from NCBI dbSNP Build 141. The source data files used for this
package were created by NCBI on May 1st, 2014, and contain SNPs
mapped to reference genome GRCh38. While the
SNPlocs.Hsapiens.dbSNP141.GRCh38 package contains only
molecular variations of class "snp", this package contains
molecular variations of other classes (in-del, heterozygous,
microsatellite, named-locus, no-variation, mixed, and
multinucleotide-polymorphism).
biocViews: AnnotationData, Genetics, XtraSNPlocs, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
source.ver:
src/contrib/XtraSNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.12.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 41
Package: XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Version: 0.99.12
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19,
SNPlocs.Hsapiens.dbSNP144.GRCh37
License: Artistic-2.0
MD5sum: 758d024c50d2349036dc27cc689b4e5a
NeedsCompilation: no
Title: Extra SNP locations for Homo sapiens (dbSNP Build 144)
Description: Extra SNP locations and alleles for Homo sapiens extracted
from NCBI dbSNP Build 144. The source data files used for this
package were created by NCBI on May 29-30, 2015, and contain
SNPs mapped to reference genome GRCh37.p13 (a patched version
of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While
the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only
molecular variations of class "snp", this package contains
molecular variations of other classes (in-del, heterozygous,
microsatellite, named-locus, no-variation, mixed, and
multinucleotide-polymorphism).
biocViews: AnnotationData, Genetics, XtraSNPlocs, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
source.ver:
src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
importsMe: appreci8R
dependencyCount: 41
Package: XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Version: 0.99.12
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38,
SNPlocs.Hsapiens.dbSNP144.GRCh38
License: Artistic-2.0
MD5sum: c617aa805c7ecf60ee9283eb3c51b1c7
NeedsCompilation: no
Title: Extra SNP locations for Homo sapiens (dbSNP Build 144)
Description: Extra SNP locations and alleles for Homo sapiens extracted
from NCBI dbSNP Build 144. The source data files used for this
package were created by NCBI on May 30, 2015, and contain SNPs
mapped to reference genome GRCh38.p2 (a patched version of
GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While
the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only
molecular variations of class "snp", this package contains
molecular variations of other classes (in-del, heterozygous,
microsatellite, named-locus, no-variation, mixed, and
multinucleotide-polymorphism).
biocViews: AnnotationData, Genetics, XtraSNPlocs, Homo_sapiens
Author: Herve Pages
Maintainer: H. Pages <hpages@fhcrc.org>
organism: Homo sapiens
source.ver:
src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: BSgenome
dependencyCount: 41
Package: xtropicaliscdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 253e3cde76a393789e124f395820e947
NeedsCompilation: no
Title: xtropicaliscdf
Description: A package containing an environment representing the
X_tropicalis.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, xtropicalis,
Xenopis_laevis
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xtropicaliscdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: xtropicalisprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 43d15a7e12edaec1bb5f24b87498b599
NeedsCompilation: no
Title: Probe sequence data for microarrays of type xtropicalis
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
X\_tropicalis\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, xtropicalis,
Xenopus_tropicalis
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/xtropicalisprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ye6100subacdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 27bd71410956bfe8bffc8de14b85bdb0
NeedsCompilation: no
Title: ye6100subacdf
Description: A package containing an environment representing the
Ye6100subA.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ye6100suba,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ye6100subacdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ye6100subbcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: ee9ec4bd941940745bad538d79bfeab4
NeedsCompilation: no
Title: ye6100subbcdf
Description: A package containing an environment representing the
Ye6100subB.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subb,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ye6100subbcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ye6100subccdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: fcdfed29a695fe53b62bacfe13dfe0c1
NeedsCompilation: no
Title: ye6100subccdf
Description: A package containing an environment representing the
Ye6100subC.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subc,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ye6100subccdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ye6100subdcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 521b501ddbcdc680c3d27b5b201029b1
NeedsCompilation: no
Title: ye6100subdcdf
Description: A package containing an environment representing the
Ye6100subD.CDF file.
biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subd,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ye6100subdcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: yeast.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: f91bf73401bc76d5d6520bfe29b23868
NeedsCompilation: no
Title: Base Level Annotation databases for yeast
Description: Base annotation databases for yeast, intended ONLY to be
used by AnnotationDbi to produce regular annotation packages.
biocViews: db0, AnnotationData, Saccharomyces_cerevisiae
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
source.ver: src/contrib/yeast.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: yeast2.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3),
org.Sc.sgd.db (>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: 818981b9562630e8a219dbe23a316e08
NeedsCompilation: no
Title: Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2)
Description: Affymetrix Yeast Genome 2.0 Array annotation data (chip
yeast2) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Saccharomyces_cerevisiae, yeast2
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
manufacturer: Affymetrix
source.ver: src/contrib/yeast2.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
suggestsMe: piano
dependencyCount: 29
Package: yeast2cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 0a718d78ae56bef9bad8168123038ac8
NeedsCompilation: no
Title: yeast2cdf
Description: A package containing an environment representing the
Yeast_2.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, yeast2,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/yeast2cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: yeast2probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: 3f52a2b7bd379624bc2966ca28c9ddf9
NeedsCompilation: no
Title: Probe sequence data for microarrays of type yeast2
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Yeast\_2\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, yeast2,
Saccharomyces_cerevisiae
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/yeast2probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ygs98.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3),
org.Sc.sgd.db (>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: ddbf44a3db85a114be4477f917f3a724
NeedsCompilation: no
Title: Affymetrix Yeast Genome S98 Array annotation data (chip ygs98)
Description: Affymetrix Yeast Genome S98 Array annotation data (chip
ygs98) assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip,
Saccharomyces_cerevisiae, ygs98
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Saccharomyces cerevisiae
manufacturer: Affymetrix
source.ver: src/contrib/ygs98.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: ygs98cdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: ec7df7564cf28e093646325ec55baf1e
NeedsCompilation: no
Title: ygs98cdf
Description: A package containing an environment representing the
YG_S98.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, ygs98,
Saccharomyces_cerevisiae
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ygs98cdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: ygs98frmavecs
Version: 1.3.0
Depends: R (>= 2.10.0)
License: GPL (>= 2)
MD5sum: e78c8447eb381b91dafb2f9688da39dc
NeedsCompilation: no
Title: Vectors used by frma for microarrays of type ygs98
Description: This package was created by frmaTools version 1.19.3 and
hgu133ahsentrezgcdf version 19.0.0.
biocViews: AnnotationData, AffymetrixChip, ygs98, Yeast, FRMA
Author: Matthew N. McCall <mccallm@gmail.com>, Rafael A. Irizarry
<rafa@jhu.edu>
Maintainer: Matthew N. McCall <mccallm@gmail.com>
source.ver: src/contrib/ygs98frmavecs_1.3.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 0
Package: ygs98probe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: f40f21d7074818a4ee74a45b5533e89d
NeedsCompilation: no
Title: Probe sequence data for microarrays of type ygs98
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
YG-S98\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, ygs98,
Saccharomyces_cerevisiae
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/ygs98probe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: zebrafish.db
Version: 3.2.3
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Dr.eg.db
(>= 3.3.0)
Imports: methods, AnnotationDbi
Suggests: DBI, annotate, RUnit
License: Artistic-2.0
MD5sum: bd3924751e782a01b08d82b0aae07579
NeedsCompilation: no
Title: Affymetrix zebrafish annotation data (chip zebrafish)
Description: Affymetrix zebrafish annotation data (chip zebrafish)
assembled using data from public repositories
biocViews: ChipDb, AnnotationData, AffymetrixChip, Danio_rerio,
zebrafish
Author: Marc Carlson
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
manufacturer: Affymetrix
source.ver: src/contrib/zebrafish.db_3.2.3.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 29
Package: zebrafish.db0
Version: 3.12.0
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.51.3)
Imports: methods, AnnotationDbi
License: Artistic-2.0
MD5sum: bcc2708be53bc3965a0a67b0baba12cd
NeedsCompilation: no
Title: Base Level Annotation databases for zebrafish
Description: Base annotation databases for zebrafish, intended ONLY to
be used by AnnotationDbi to produce regular annotation
packages.
biocViews: db0, AnnotationData, Danio_rerio
Author: Bioconductor Core Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
organism: Danio rerio
source.ver: src/contrib/zebrafish.db0_3.12.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: zebrafishcdf
Version: 2.18.0
Depends: utils
Imports: AnnotationDbi
License: LGPL
MD5sum: 04edbb632600c97610b86423c2d850e7
NeedsCompilation: no
Title: zebrafishcdf
Description: A package containing an environment representing the
Zebrafish.cdf file.
biocViews: AnnotationData, AffymetrixChip, cdf, zebrafish, Danio_rerio
Author: The Bioconductor Project
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/zebrafishcdf_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28
Package: zebrafishprobe
Version: 2.18.0
Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21)
License: LGPL
MD5sum: eea2747859afa763addc7313ab0a2452
NeedsCompilation: no
Title: Probe sequence data for microarrays of type zebrafish
Description: This package was automatically created by package
AnnotationForge version 1.11.21. The probe sequence data was
obtained from http://www.affymetrix.com. The file name was
Zebrafish\_probe\_tab.
biocViews: AnnotationData, AffymetrixChip, probe, zebrafish,
Danio_rerio
Author: The Bioconductor Project www.bioconductor.org
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
source.ver: src/contrib/zebrafishprobe_2.18.0.tar.gz
hasREADME: FALSE
hasNEWS: FALSE
hasINSTALL: FALSE
hasLICENSE: FALSE
dependencyCount: 28