ASpli
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ASpli.
Analysis of Alternative Splicing Using RNA-Seq
Bioconductor version: 3.14
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz
Maintainer: Estefania Mancini <emancini at leloir.org.ar>
Citation (from within R, enter
citation("ASpli")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASpli")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASpli")| ASpli | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
| Version | 2.4.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL |
| Depends | methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi |
| Imports | GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASpli_2.4.0.tar.gz |
| Windows Binary | ASpli_2.4.0.zip |
| macOS 10.13 (High Sierra) | ASpli_2.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ASpli |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpli |
| Bioc Package Browser | https://code.bioconductor.org/browse/ASpli/ |
| Package Short Url | https://bioconductor.org/packages/ASpli/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |