HTSeqGenie

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see HTSeqGenie.

A NGS analysis pipeline.

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HTSeqGenie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HTSeqGenie")

HTSeqGenie	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Software
Version	4.24.0
In Bioconductor since	BioC 2.11 (R-2.15) (11.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), gmapR(>= 1.8.0), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3)
Imports	BiocGenerics(>= 0.2.0), S4Vectors(>= 0.9.25), IRanges(>= 1.21.39), GenomicRanges(>= 1.23.21), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.7.7), GenomeInfoDb, SummarizedExperiment, methods
System Requirements
URL

See More

Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HTSeqGenie_4.24.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/HTSeqGenie
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HTSeqGenie
Bioc Package Browser	https://code.bioconductor.org/browse/HTSeqGenie/
Package Short Url	https://bioconductor.org/packages/HTSeqGenie/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive