genomeIntervals
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.
Operations on genomic intervals
Bioconductor version: 3.14
This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.
Author: Julien Gagneur <gagneur at in.tum.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme
Maintainer: Julien Gagneur <gagneur at in.tum.de>
citation("genomeIntervals")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genomeIntervals")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genomeIntervals")| Overview of the genomeIntervals package. | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Genetics, Infrastructure, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2) |
| Imports | GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10) |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | ChIC.data, girafe |
| Imports Me | ChIC, easyRNASeq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genomeIntervals_1.50.0.tar.gz |
| Windows Binary | genomeIntervals_1.50.0.zip |
| macOS 10.13 (High Sierra) | genomeIntervals_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genomeIntervals |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genomeIntervals |
| Bioc Package Browser | https://code.bioconductor.org/browse/genomeIntervals/ |
| Package Short Url | https://bioconductor.org/packages/genomeIntervals/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |