tRNAscanImport
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see tRNAscanImport.
Importing a tRNAscan-SE result file as GRanges object
Bioconductor version: 3.14
The package imports the result of tRNAscan-SE as a GRanges object.
Author: Felix G.M. Ernst [aut, cre] 
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation (from within R, enter
citation("tRNAscanImport")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tRNAscanImport")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tRNAscanImport")| tRNAscanImport | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Preprocessing, Software, Visualization, WorkflowStep |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.5), GenomicRanges, tRNA |
| Imports | methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools |
| System Requirements | |
| URL | https://github.com/FelixErnst/tRNAscanImport |
| Bug Reports | https://github.com/FelixErnst/tRNAscanImport/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Structstrings, tRNA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tRNAscanImport_1.14.0.tar.gz |
| Windows Binary | tRNAscanImport_1.14.0.zip |
| macOS 10.13 (High Sierra) | tRNAscanImport_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tRNAscanImport |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tRNAscanImport |
| Bioc Package Browser | https://code.bioconductor.org/browse/tRNAscanImport/ |
| Package Short Url | https://bioconductor.org/packages/tRNAscanImport/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |