PasillaTranscriptExpr

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: 3.14

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PasillaTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

Generation of transcript counts from pasilla dataset with kallisto	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version	1.22.0
License	GPL (>= 3)
Depends	R (>= 3.3.0)
Imports
System Requirements
URL

Suggests	rtracklayer, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	DRIMSeq
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	PasillaTranscriptExpr_1.22.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr
Package Short Url	https://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report	Download Stats