spatialDmelxsim
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see spatialDmelxsim.
Spatial allelic expression counts for fly cross embryo
Bioconductor version: 3.14
Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.
Author: Michael Love [aut, cre]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("spatialDmelxsim")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spatialDmelxsim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spatialDmelxsim")| spatialDmelxsim | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData |
| Version | 1.0.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), ExperimentHub, SummarizedExperiment |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/mikelove/spatialDmelxsim |
| Bug Reports | https://github.com/mikelove/spatialDmelxsim/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spatialDmelxsim_1.0.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/spatialDmelxsim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spatialDmelxsim |
| Package Short Url | https://bioconductor.org/packages/spatialDmelxsim/ |
| Package Downloads Report | Download Stats |