EBSEA
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see EBSEA.
Exon Based Strategy for Expression Analysis of genes
Bioconductor version: 3.16
Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.
Author: Arfa Mehmood, Asta Laiho, Laura L. Elo
Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>
Citation (from within R, enter
citation("EBSEA")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EBSEA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBSEA")
EBSEA | HTML | R Script |
Reference Manual |
Details
biocViews | DifferentialExpression, GeneExpression, Sequencing, Software |
Version | 1.26.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL-2 |
Depends | R (>= 4.0.0) |
Imports | DESeq2, graphics, stats, EmpiricalBrownsMethod |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EBSEA_1.26.0.tar.gz |
Windows Binary | EBSEA_1.26.0.zip |
macOS Binary (x86_64) | EBSEA_1.26.0.tgz |
macOS Binary (arm64) | EBSEA_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EBSEA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EBSEA |
Bioc Package Browser | https://code.bioconductor.org/browse/EBSEA/ |
Package Short Url | https://bioconductor.org/packages/EBSEA/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.16 | Source Archive |