SingleCellSignalR
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SingleCellSignalR.
Cell Signalling Using Single Cell RNAseq Data Analysis
Bioconductor version: 3.16
Allows single cell RNA seq data analysis, clustering, creates internal network and infers cell-cell interactions.
Author: Simon Cabello-Aguilar [aut], Jacques Colinge [cre, aut]
Maintainer: Jacques Colinge <jacques.colinge at inserm.fr>
Citation (from within R, enter
citation("SingleCellSignalR")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SingleCellSignalR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SingleCellSignalR")| my-vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, Network, RNASeq, SingleCell, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | BiocManager, circlize, limma, igraph, gplots, grDevices, edgeR, SIMLR, data.table, pheatmap, stats, Rtsne, graphics, stringr, foreach, multtest, scran, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | tidySingleCellExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SingleCellSignalR_1.10.0.tar.gz |
| Windows Binary | SingleCellSignalR_1.10.0.zip |
| macOS Binary (x86_64) | SingleCellSignalR_1.10.0.tgz |
| macOS Binary (arm64) | SingleCellSignalR_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SingleCellSignalR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SingleCellSignalR |
| Bioc Package Browser | https://code.bioconductor.org/browse/SingleCellSignalR/ |
| Package Short Url | https://bioconductor.org/packages/SingleCellSignalR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |