epistack
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see epistack.
Heatmaps of Stack Profiles from Epigenetic Signals
Bioconductor version: 3.16
The epistack package main objective is the visualizations of stacks of genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data) centered at genomic regions of interest.
Author: SACI Safia [aut], DEVAILLY Guillaume [cre]
Maintainer: DEVAILLY Guillaume <gdevailly at hotmail.com>
citation("epistack")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epistack")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epistack")| Using epistack | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ChIPSeq, GeneExpression, Preprocessing, RNASeq, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | GenomicRanges, SummarizedExperiment, BiocGenerics, S4Vectors, IRanges, viridisLite, graphics, plotrix, grDevices, stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epistack_1.4.0.tar.gz |
| Windows Binary | epistack_1.4.0.zip |
| macOS Binary (x86_64) | epistack_1.4.0.tgz |
| macOS Binary (arm64) | epistack_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epistack |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epistack |
| Bioc Package Browser | https://code.bioconductor.org/browse/epistack/ |
| Package Short Url | https://bioconductor.org/packages/epistack/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |