fastLiquidAssociation
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see fastLiquidAssociation.
functions for genome-wide application of Liquid Association
Bioconductor version: 3.16
This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.
Author: Tina Gunderson
Maintainer: Tina Gunderson <gunderson.tina at gmail.com>
citation("fastLiquidAssociation")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fastLiquidAssociation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fastLiquidAssociation")| fastLiquidAssociation Vignette | R Script | |
| Reference Manual |
Details
| biocViews | CellBiology, GeneExpression, Genetics, Pathways, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-2 |
| Depends | methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils |
| Imports | WGCNA, impute, preprocessCore |
| System Requirements | |
| URL |
See More
| Suggests | GOstats, yeastCC, org.Sc.sgd.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | fastLiquidAssociation_1.34.0.tar.gz |
| Windows Binary | fastLiquidAssociation_1.34.0.zip |
| macOS Binary (x86_64) | fastLiquidAssociation_1.34.0.tgz |
| macOS Binary (arm64) | fastLiquidAssociation_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/fastLiquidAssociation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fastLiquidAssociation |
| Bioc Package Browser | https://code.bioconductor.org/browse/fastLiquidAssociation/ |
| Package Short Url | https://bioconductor.org/packages/fastLiquidAssociation/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |