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methInheritSim

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data


Bioconductor version: 3.16

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Installation

To install this package, start R (version "4.2") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")
Simulating Whole-Genome Inherited Bisulphite Sequencing Data HTML R Script
Reference Manual PDF
README Text
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.20.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
System Requirements
URL https://github.com/belleau/methInheritSim
Bug Reports https://github.com/belleau/methInheritSim/issues
See More
Suggests BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me methylInheritance
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methInheritSim_1.20.0.tar.gz
Windows Binary methInheritSim_1.20.0.zip (64-bit only)
macOS Binary (x86_64) methInheritSim_1.20.0.tgz
macOS Binary (arm64) methInheritSim_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methInheritSim
Bioc Package Browser https://code.bioconductor.org/browse/methInheritSim/
Package Short Url https://bioconductor.org/packages/methInheritSim/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive