similaRpeak
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor version: 3.16
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Author: Astrid Deschênes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
citation("similaRpeak")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("similaRpeak")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("similaRpeak")| Similarity between two ChIP-Seq profiles | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R6 (>= 2.0) |
| Imports | stats |
| System Requirements | |
| URL | https://github.com/adeschen/similaRpeak |
| Bug Reports | https://github.com/adeschen/similaRpeak/issues |
See More
| Suggests | RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metagene |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | similaRpeak_1.30.0.tar.gz |
| Windows Binary | similaRpeak_1.30.0.zip |
| macOS Binary (x86_64) | similaRpeak_1.30.0.tgz |
| macOS Binary (arm64) | similaRpeak_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/similaRpeak |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/similaRpeak |
| Bioc Package Browser | https://code.bioconductor.org/browse/similaRpeak/ |
| Package Short Url | https://bioconductor.org/packages/similaRpeak/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |