Changes in version 3.2.0                        

  - New resource: PrePPI
  - Configuration option to completely disable logging to file
  - New vignettes: Path reconstruction, and Bioconductor 2021 Workshop
  - Many minor bugfixes and improvements

                       Changes in version 2.99.19                       

  - NicheNet pipeline works
  - Fixed an error which resulted value 1 in the n_references columns
    even for records without references

                       Changes in version 2.99.17                       

  - Improved quality filtering of intercell networks

                       Changes in version 2.99.16                       

  - Improved API for translate_ids
  - Quality filtering of intercell networks

                       Changes in version 2.99.13                       

  - Functions to access KEGG Pathways
  - More robust access to UniProt (in case of network failures)

                       Changes in version 2.99.11                       

  - Improved downloader backends

                       Changes in version 2.99.8                        

  - OBO parser
  - Gene Ontology access, functions to work with ontology trees
  - Database manager

                       Changes in version 2.99.7                        

  - New interactions query parameter: loops
  - Fixed many caching bugs

                       Changes in version 2.99.6                        

  - All downloaders attempt 3 times
  - New resources: Human Phenotype Ontology and Gene Ontology
    annotations

                 Changes in version 2.99.0 (2021-03-08)                 

  - Many new resources besides OmniPath: BioPlex, ConsensusPathDB, EVEX,
    Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, InWeb
    InBioMap, Pathway Commons, Ramilowski et al. 2015, RegNetwork,
    ReMap, TF census, TRRUST and Vinayagam et al. 2011
  - Methods for converting network elements to Bio Model Analyzer (BMA)
    motifs
  - NicheNet workflow
  - Some igraph related methods: finding all paths up to certain length;
    extracting the giant component of a graph
  - Caching
  - Logging
  - Configuration handling

                 Changes in version 1.99.0 (2020-10-03)                 

  - New tests
  - Many little bugfixes
  - Updated package metadata
  - Preparation for Bioconductor 3.12

                 Changes in version 1.3.4 (2020-08-04)                  

  - License and password handling
  - Can be directed to different server by options

                 Changes in version 1.3.1 (2020-06-05)                  

  - Addition of the package website.
  - Modification of the pdf vignette for an html one.
  - Major refactoring of functions.
  - Addition of the intercellular network function.
  - Modification for the intercellular categories.

                 Changes in version 1.1.4 (2020-03-28)                  

  - Refactored the import_annotations method

                Changes in version 0.99.12 (2019-10-10)                 

  - Modification in the separation between genes within a complex (from
    dash to underscore)

                 Changes in version 0.99.0 (2019-10-10)                 

  - Submitted to Bioconductor