Changes in version 2.0.0                        

MAJOR UPDATE Adding the Following Functionality:

  - Format, Library, and Testing Improvements o Enable processing of
    libraries with 1:many reagent:target assignments o Standardization
    and clarification of Annotation objects and symbol/identifier
    relationships o Implementation of factored quantile normalization
    for timecourse screens o Introduction of the simpleResult format and
    integration with associated functions o Conditional testing
    framework for quantifying and visualizing signal agreement between
    contrasts

  - Transition to gene set enrichment testing via Sparrow
    
    o Implement wrappers and provide recommendations fopr geneset
    enrichment testing in pooled screens o Implementation of GREAT-style
    pathway mapping for libraries with heterogenous target:gene mappings
    o Summarization tools for comparing enrichment signals across
    screens

  - New Visualization and Interpretation Tools
    
    o Signal Summary Barchart (Single or Multiple Contrasts) o Waterfall
    reagent/target/pathway visualization (Single Contrast) o Contrast
    comparison plots:
    
      - Concordance at the Top (CAT)
      - Probability Space scatter plots
      - UpSet plots with conditional overlap framework

                       Changes in version 1.20.0                        

Inclusion of factored quantile normalization and additional convenience
functions, typo revisions in the vignettes. Suppression of results
dataframe reordering by ct.generateResults(). Implementation of
alternative reagent:target assignment, useful for situations where
reagents are known to target multiple valid targets.

                       Changes in version 1.15.0                        

Various code updates, new functions added for visualization,
compatibility with modern R objects. Russell Bainer redesignated as
official maintainer.

                        Changes in version 1.1.0                        

Miscellaneous minor report edits and performance upgrades. Bugfix to
P-value based scoring algorithm. Peter Haverty designated as official
maintainer.

                        Changes in version 1.0.0                        

First official release to Bioconductor.

                       Changes in version 0.99.0                        

Initial bioconductor submission.