Changes in version 1.5.1
o Adds QC functions for BeadArray metrics and log M/U signals
o Adds data and accessor function for cross-reactive CpGs
o Adds vignette showing how to do power analysis with pwrEWAS
o Adds vignette showing how to infer genetic ancestry using
GLINT/EPISTRUCTURE
o Adds vignette showing how to do nearest neighbors search using
a search index
o Adds functions for feature hashing, search index construction,
and KNN search
Changes in version 1.1.4
o Improves User's Guide, fixes typos, new citation, adds
disclaimer text, updates servermatrix() chunk.
o Updates examples to further limit downloads. Function
get_rmdl() uses download = FALSE,
o Updates Data Analyses vignette. Uses reduced dpi for images in
Data Analyses vignette to limit package size. Uses updated
metadata file name.
o Compresses new metadata v.0.0.2 files to limit package size.
o Uses uniform metadata file label for v.0.0.1 file.
Changes in version 1.1.3
o Added v.0.0.2 database compilation files to server
(recount.bio/data) and revised recountmethylation functions for
cross-platform support. The new files reflect IDAT downloads
completed in Nov 2020 from GEO/GDS, including the first
compilations of EPIC/HM850K arrays.
o Added `platform` argument in relevant `getdb` functions.
o Added `which.platform` argument to `get_rmdl`
o Added new function `smfilt` to filter server data table for
newest compilation files, accounting for platform in the
filename.
o Cleaned up and shoretened the `servermatrix` function. This now
handles RCurl call for "dn" (originally from `get_rmdl`) when
handling condition `dn = NULL`.
o Updated the User's Guide to fix typos, reflect v.0.0.2 samples,
and add a download troubleshoot section. Added numeric
citations format, removed evaluation of validation section due
to possible package build failure from bad internet connection.
o Updated ExperimentHub file metadata script and table to add new
v.0.0.2 compilation files.
o Renamed sample metadata directory to "gsm_metadata" to avoid
confusion with "metadata.csv" file table for hubs.
Changes in version 0.99.0
o Added getdb functions for database file download and load
o Added servermatrix function to get latest database file
metadata
o Added User's Guide and Data Analyses vignettes
o Added metadata and data_analyses.RData to /inst/extdata
Changes in version 0.01
o Added key query/accessor functions.
o Added package vignette.