Changes in version 1.1.6                        

  - Accepts DelayedArray, HDF5Array and dgCMatrix inputs in the slots of
    input SCE objects.
  - Significant speed optimisation on scSEGIndex and add BiocParallel
    support.
  - Updated scSEGIndex references after publication.
  - scMerge now has the svd_k input that controls the number
    eigenvectors needed in the RUV step to allow fast approximation for
    large dataset.
  - Now using BiocSingular to manage all SVD components.
  - Now automatically remove zeroes in the rows and columns of the SCE.

                        Changes in version 1.1.5                        

  - Adding version restrictions on S4Vectors and SingleCellExperiment
    dependent packages.

                        Changes in version 1.1.4                        

  - plot_igraph would allow suppression of igraph output during
    unsupervised scMerge

                        Changes in version 1.1.3                        

  - Column name must be non-NULL and without duplicates

                        Changes in version 1.1.2                        

  - Resolved problems with only a single linking cell-type across
    multiple batches

                        Changes in version 1.1.0                        

  - Accepted by Bioconductor

                        Changes in version 0.99                         

scMerge 0.99.24

  - Updated ciation information due to PNAS acceptance.

scMerge 0.99.23

  - Fixed assignment based on feedbacks

scMerge 0.99.21

  - Increase code coverage to 85%.

scMerge 0.99.20

  - Updated vignette on SEGs and manuals

scMerge 0.99.19

  - Fixed spelling
  - Added verbose option
  - Code coverage at 75 percent (more tests on error handling needed)

scMerge 0.99.17

  - Fixed README install_github vignette issue.
  - Fixed pkgdown organisation issue.
  - Major updates on the scReplicate function: more informative
    messages.
  - Using cross-product of matrix to perform SVD to speed up
    calculations.
  - Added testing scripts.
  - Fixed vignette text output issues.

scMerge 0.99.11

  - Reduced data size in scMerge to pass BioC checks