SNPlocs.Hsapiens.dbSNP155.GRCh38
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP155.GRCh38.
Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly
Bioconductor version: 3.16
The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("SNPlocs.Hsapiens.dbSNP155.GRCh38")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.23 |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), BSgenome(>= 1.66.2) |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MungeSumstats |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.23.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/ |
| Package Downloads Report | Download Stats |