MouseGastrulationData
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MouseGastrulationData.
Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis
Bioconductor version: 3.16
Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.
Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]
Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>
citation("MouseGastrulationData")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MouseGastrulationData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MouseGastrulationData")| Available datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData |
| Version | 1.12.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment |
| Imports | methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix |
| System Requirements | |
| URL | https://github.com/MarioniLab/MouseGastrulationData |
| Bug Reports | https://github.com/MarioniLab/MouseGastrulationData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.multisample |
| Imports Me | |
| Suggests Me | miloR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MouseGastrulationData_1.12.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MouseGastrulationData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MouseGastrulationData |
| Package Short Url | https://bioconductor.org/packages/MouseGastrulationData/ |
| Package Downloads Report | Download Stats |