Package: scanMiR
Type: Package
Title: scanMiR
Version: 1.16.0
Depends: R (>= 4.0)
Date: 2025-07-24
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
            role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Michael", "Soutschek", email="michael.soutschek@hest.ethz.ch", role="aut"),
    person("Fridolin", "Gross", email="fridolin.gross@u-bordeaux.fr", role="aut"))
Imports: Biostrings, pwalign, GenomicRanges, IRanges, data.table,
        BiocParallel, methods, Seqinfo, S4Vectors, ggplot2, stats,
        stringi, utils, graphics, grid, seqLogo, cowplot
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Description: A set of tools for working with miRNA affinity models
        (KdModels), efficiently scanning for miRNA binding sites, and
        predicting target repression. It supports scanning using miRNA
        seeds, full miRNA sequences (enabling 3' alignment) and
        KdModels, and includes the prediction of slicing and TDMD
        sites. Finally, it includes utility and plotting functions
        (e.g. for the visual representation of miRNA-target alignment).
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.3.1
biocViews: miRNA, SequenceMatching, Alignment
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:10:43 UTC
RemoteUrl: https://github.com/bioc/scanMiR
RemoteRef: RELEASE_3_22
RemoteSha: fa9b00ad79150324534e7ca6958e9308daea21c8
NeedsCompilation: no
Packaged: 2025-11-11 17:11:03 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Michael Soutschek [aut],
  Fridolin Gross [aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
Built: R 4.5.2; ; 2025-11-11 17:18:01 UTC; windows
