# Generated by roxygen2: do not edit by hand

export(CalculatePValues)
export(GenerateNullPANDADistribution)
export(PlotNetwork)
export(RunBLOBFISH)
export(adj2el)
export(adj2regulon)
export(alpaca)
export(alpacaCrane)
export(alpacaExtractTopGenes)
export(alpacaListToGo)
export(annotateFromBiomart)
export(checkMisAnnotation)
export(checkTissuesToMerge)
export(cobra)
export(condorCluster)
export(condorCoreEnrich)
export(condorMatrixModularity)
export(condorModularityMax)
export(condorPlotCommunities)
export(condorPlotHeatmap)
export(condorQscore)
export(craneBipartite)
export(craneUnipartite)
export(createCondorObject)
export(domonster)
export(downloadGTEx)
export(dragon)
export(el2adj)
export(el2regulon)
export(elistToAdjMat)
export(filterGenes)
export(filterLowGenes)
export(filterMissingGenes)
export(filterSamples)
export(gsea_categorical)
export(gsea_numeric)
export(lioness)
export(lionessPy)
export(monster)
export(monsterBereFull)
export(monsterCalculateTmPValues)
export(monsterCalculateTmStats)
export(monsterCheckDataType)
export(monsterGetTm)
export(monsterHclHeatmapPlot)
export(monsterMonsterNI)
export(monsterPlotMonsterAnalysis)
export(monsterPrintMonsterAnalysis)
export(monsterTransformationMatrix)
export(monsterTransitionNetworkPlot)
export(monsterTransitionPCAPlot)
export(monsterdTFIPlot)
export(normalizeTissueAware)
export(otter)
export(pandaDiffEdges)
export(pandaPy)
export(pandaToAlpaca)
export(pandaToCondorObject)
export(plotCMDS)
export(plotDensity)
export(plotHeatmap)
export(priorPp)
export(puma)
export(runEgret)
export(sambar)
export(sambarConvertgmt)
export(sambarCorgenelength)
export(seahorse)
export(sourcePPI)
export(spider)
export(tiger)
import(MASS)
import(Matrix)
import(data.table)
import(doParallel)
import(foreach)
import(igraph)
import(parallel)
import(reticulate)
import(stats, except= c(cov2cor,decompose,toeplitz,lowess,update,spectrum))
importClassesFrom(Biobase,ExpressionSet)
importClassesFrom(Biobase,eSet)
importFrom(Biobase,"assayData<-")
importFrom(Biobase,"fData<-")
importFrom(Biobase,"pData<-")
importFrom(Biobase,"phenoData<-")
importFrom(Biobase,"storageMode<-")
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,assayData)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,featureNames)
importFrom(Biobase,pData)
importFrom(Biobase,storageMode)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,graph.data.frame)
importFrom(igraph,plot.igraph)
importFrom(matrixStats,colSds)
importFrom(matrixStats,rowSds)
importFrom(methods,is)
importFrom(methods,new)
importFrom(pandaR,panda)
importFrom(parallel,mclapply)
importFrom(reshape,melt.array)
importFrom(stats,ave)
importFrom(stats,cmdscale)
importFrom(stats,dist)
importFrom(stats,model.matrix)
importFrom(stats,runmed)
importFrom(stats,sd)
importFrom(utils,write.table)
