48abf746a63e36ac302147ce6705a860 *DESCRIPTION
ed8a61297e2f2d5e4f563fd7f86b5b56 *LICENSE
3f5d62bdaea1179e566ae22eb5e2f3bf *NAMESPACE
c15f34de8599568dd602a642086266e7 *NEWS
df6cc46bc7fae1a55b713f3d5065b35a *R/CSOA-package.R
358ae596bfbf88a267949e11d95165df *R/attach_cell_scores.R
5f6892551da6451aca09672f59e1510a *R/compute_pair_scores.R
fe803c7163121fba15860ebf27b13800 *R/extra_filter.R
4ea1b01aeeccb125a5c31e0358163130 *R/gene_degrees.R
6ffc56652b86047650f6690042663909 *R/gene_modules.R
942f9774cefc006322807fc6018d9d05 *R/generate_overlaps.R
ce7ab4d80719b0b6b03a72da76fa1ac5 *R/generics.R
7e51e31af3cf2ff3f231b1a9a662379a *R/main.R
972acf8b08e00e822c842386d1d32e7a *R/percentile_sets.R
0738b7eacd67b08a21ccdeb5b2cc25b6 *R/process_overlaps.R
dd8d64ad13564a47349d52cd1313c238 *R/score_cells.R
1765bcfb1ec47fa53d3423d971772ba9 *R/utils.R
dc055b5a7af59df0203175eda376cb6a *R/visualization.R
2331b6f4d93c1a074c811db66381be45 *R/visualization_aux.R
6aaa9b1178179f3d8bb79f92d6db5649 *README.md
bf209b450939af5bc26ceadb985528d8 *build/vignette.rds
8aa044bc161c256e5cc0072e380858cb *inst/doc/Advanced-CSOA.R
ca114955a6da5868019d30d393a327e7 *inst/doc/Advanced-CSOA.Rmd
b30568d0ceb7de93fa657d9ec921b137 *inst/doc/Advanced-CSOA.html
a373cc620aeaa0db082b2ff4c2cf33b5 *inst/doc/CSOA.R
f3c2fcf1f2bc77bf351910fda53c4cd4 *inst/doc/CSOA.Rmd
6452dd3caa02e33eacaddb4dfdc7554f *inst/doc/CSOA.html
fb1474c9e0da9696d5e828af54172902 *inst/doc/The-CSOA-algorithm.R
a143140657a5c0911a0dad2324977093 *inst/doc/The-CSOA-algorithm.Rmd
25ec34359cfe54a695f94b9cebb06200 *inst/doc/The-CSOA-algorithm.html
77226ef1aedd240d3028b1be28d26020 *man/CSOA-package.Rd
5bd3f5389c9fa3777f5203a95411609d *man/attachCellScores.Rd
6f34af1d3401b6820f2ff59206ddf2f6 *man/basicHeatmap.Rd
166a7784286dd475b43ee367b4e1cd92 *man/breakWeakTies.Rd
8c20c68aa48f0cafd89051479e35aea7 *man/cellDistribution.Rd
1be284883174e055f0a382d1bee95773 *man/cellSetsOverlaps.Rd
43c61b84305791616e0b53d420316fe3 *man/computePCPairScores.Rd
9eabce5db4fabb6cf31ab2c0a3daba62 *man/computePairScores.Rd
949e65b876ee363814ac9fd6d5bc5fd2 *man/edgeLists.Rd
77c85b382b37ed2a3ea15c440f8cf038 *man/expMat.Rd
ddc7e9efd6d0cf25e188dce12a6c3f32 *man/featureWes.Rd
4fc19ec53f20569ede17b724e91ac429 *man/geneRadialPlot.Rd
676bb647a40c45db5e97808db25e0035 *man/generateOverlaps.Rd
ecf6cf48f46dacb3c992a7222e5c1740 *man/getPairs.Rd
6d814c783e404d4705a005bd13af8757 *man/networkPlotDF.Rd
6fb204aea1b45ac89c9805528b10f276 *man/overlapCutoffPlot.Rd
67deb278f65cec1a18827c5105b3294c *man/overlapGenes.Rd
bc7c85a3bf7de9deb0a47420dab6dbc4 *man/overlapNetworkPlot.Rd
a815b5977b87c7566d663efc584cf229 *man/overlapPairs.Rd
739aaa2fdec08568b149ba74f983fd9e *man/percentileSets.Rd
b3f3d69d1d62d7f9958eb4cfb6a52ecc *man/prefilterOverlaps.Rd
7aeb8cc21e2f914d8e6b0fd496bb55f8 *man/processOverlaps.Rd
eccefe3f672e03c3b0b0dca3cf9ceab2 *man/qGrab.Rd
cdfee6560bf6ad7d958e7161783134c9 *man/runCSOA.Rd
0051abcb3bfb2e605f0ce84662ab7eb1 *man/scoreCells.Rd
03ec0add6f673baacc091e5b98798c2f *man/scoreCellsCore.Rd
1f01b992a54b7ed3a5cecdef9e401e5a *man/scoreModules.Rd
6644c8a70b473614e34d00e27519fda0 *tests/testthat.R
e363853c5e02c02e7c37242dbfb6cfe6 *tests/testthat/test-CSOA.R
ca114955a6da5868019d30d393a327e7 *vignettes/Advanced-CSOA.Rmd
f3c2fcf1f2bc77bf351910fda53c4cd4 *vignettes/CSOA.Rmd
a143140657a5c0911a0dad2324977093 *vignettes/The-CSOA-algorithm.Rmd
