37672a2da7b5765a0fe6c57c5eea66fc *DESCRIPTION
27ce7b9310d7f8533ebdca34cbe7874d *LICENSE
ef34e8826ea46c886ad42416b0118050 *NAMESPACE
e22196424d04c322e363f00c70b8561a *NEWS.md
a914fb4fb71ebe5ac9e18297e17ccb0d *R/AllClasses.R
c7b52bac1a4461302dba806bf3ee6c42 *R/ClonalSim-package.R
782403fa9b6c9e8cbaa012ea75b41db5 *R/accessors.R
38e206f877ab7bf23bd554f7e80651c0 *R/bioconductor.R
9b5ffa655762282b624c88ffa70e1f9f *R/methods.R
ca5bf1ad8ff12f002782a8112eb52430 *R/noise_model.R
e0a807358e1ef0f316bbb219163a6123 *R/simulateTumor.R
f348e41697e388e98de2856a257c4297 *R/utils.R
8330f5968fa19295f101e29f05e9de33 *README.md
3075731a39da1eb272a2050fc3363fb4 *build/vignette.rds
b08119d02ad0fac05ddf60673b5b4b47 *inst/doc/Introduction_to_ClonalSim.R
52fa6302cee134be9183f476715764c7 *inst/doc/Introduction_to_ClonalSim.Rmd
b45dc95cf0be3846b4fa79422de53c2d *inst/doc/Introduction_to_ClonalSim.html
3bc091c14c623785ebc77345cf681b5d *man/ClonalSim-package.Rd
344cab048e766d9ca191cbe50a3fcf5f *man/ClonalSimData-class.Rd
684dce56c231e2eae56cafad647b4652 *man/ClonalSimData.Rd
17250533ac4299676e62483208ea1d1f *man/applyBiologicalNoise.Rd
354ed5ee2fed94f0f66991dd80d70bb2 *man/getClonalStructure.Rd
39a39a2a6d5b213b543116bf54f962eb *man/getMetadata.Rd
c26b64546b571b7362c9d6bb89ea9f5d *man/getMutations.Rd
ba3f064b63f9889865bcc67972039343 *man/getObservedVAF.Rd
ceb4a6e104b908331845ed24c911bbb5 *man/getSimParams.Rd
26fdb61fd478c4e0af5ab55c497c63fa *man/getTrueVAF.Rd
619f69cd12c2bf301377645dd8dc7c52 *man/plot-ClonalSimData-missing-method.Rd
cbff46adee291576f325aac8c1cd2492 *man/print.summary.ClonalSimData.Rd
80e43c7ff86d94e52653a41db151074c *man/show-ClonalSimData-method.Rd
58ec0ebba1e82d700882293b37dfa33f *man/simulateDepth.Rd
2c0539f1988ecb32b7692c30a18beb44 *man/simulateSequencingReads.Rd
669aed33f07d66e2de42acc5d684a3e9 *man/simulateTumor.Rd
ce4052dcbb456b0e91fbe14f7fc4c470 *man/summary-ClonalSimData-method.Rd
56e08a90043ae215382d319b819f494e *man/toDataFrame.Rd
775cdc99385416decf9c7b1821ead77e *man/toGRanges.Rd
8d86e2de763a059f3d16716644535564 *man/toPyClone.Rd
afd93bdfb00d2cde0cdbccbb62da825a *man/toSciClone.Rd
62bda1870ee9409f3b6b99c898383b5a *man/toVCF.Rd
e6cb139887bcd45de3240515bec06953 *tests/testthat.R
5b252aa7c40333462b17fece9b09e8ab *tests/testthat/test-accessors.R
635c6bad9e0d5d79a931b9081a0fc4cc *tests/testthat/test-bioconductor.R
1a4cacf17c96785b40c7333c2e86155e *tests/testthat/test-methods.R
40c9e83e821eeb0097bcf854f4759787 *tests/testthat/test-noise_model.R
cd6842c1fa007b21f00545f1e0c81ae4 *tests/testthat/test-simulateTumor.R
52fa6302cee134be9183f476715764c7 *vignettes/Introduction_to_ClonalSim.Rmd
