# Generated by roxygen2: do not edit by hand

S3method(print,summary.ClonalSimData)
export(ClonalSimData)
export(applyBiologicalNoise)
export(getClonalStructure)
export(getMetadata)
export(getMutations)
export(getObservedVAF)
export(getSimParams)
export(getTrueVAF)
export(simulateDepth)
export(simulateSequencingReads)
export(simulateTumor)
export(toDataFrame)
export(toGRanges)
export(toPyClone)
export(toSciClone)
export(toVCF)
exportClasses(ClonalSimData)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
import(ggplot2)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,Rle)
importFrom(VariantAnnotation,VRanges)
importFrom(VariantAnnotation,writeVcf)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(rlang,.data)
importFrom(stats,median)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(stats,rpois)
importFrom(stats,sd)
importFrom(tidyr,all_of)
importFrom(tidyr,pivot_longer)
importFrom(utils,packageVersion)
importFrom(utils,write.csv)
importFrom(utils,write.table)
