4b60c5f23d55ce0eae0f95628d1fd37b *DESCRIPTION
90fa0b0547fad70f38316f231494963a *NAMESPACE
7b021c2535592bae824ff1eb100ffecd *NEWS.md
3aa52f45d9f368962c88fac90611409e *R/AllClasses.R
e1ebb335d7c56d66e35ed18d6a5f57f7 *R/AllGenerics.R
1a0d447db0e669fee1510725798a29be *R/MIRit-package.R
02285fdd2c3b842048092567d838066a *R/RcppExports.R
ea65175e198bde5fc2d15ff500e625ed *R/association.R
553651fc7896e199e97cf534656b3e94 *R/batch-correction.R
c44573b7e0e287874daae68d96d0dd12 *R/data.R
a8ff501fab69df2a33c09913470f3a19 *R/differential-expression.R
082d37b158f95d526a82eea6b9fb6575 *R/enrichment.R
e688bfec09bd5a7af55762a1407dde22 *R/integration.R
fbc440b3d4cb4d2d3802b6db9a912f80 *R/show-methods.R
3a67241bfe791ec5ac911595019aceec *R/sysdata.rda
5a0c5090dd35450d6071ce3163a084d0 *R/targets.R
f55b337b82191827aeff9d7b83c68268 *R/topological-integration.R
e03c7d5fad1ef13e770c57ae073dbee9 *R/utils.R
4c749b6de7a3f9b688faac4cab811704 *R/visualization.R
63da8c0b2b21c01773a3f5f9553493e4 *README.md
e9fb8628c118ed485b0f6bae9bd94f60 *build/vignette.rds
7219cca0c89817573585f04611146e89 *data/geneCounts.rda
ceeb5e4c20a4a7a1a4ee59c9202db0f9 *data/mirnaCounts.rda
1602e8ac1c33f3d5c235bd25938a87aa *inst/CITATION
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3f75077c384ffd193c2e3713ca86dabe *inst/doc/MIRit.Rmd
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085c943c1159404fab8633f83d62c023 *man/FunctionalEnrichment-class.Rd
adae2cc551078738b61d679be143fa3c *man/IntegrativePathwayAnalysis-class.Rd
47d5d4477d0fff5f5ef9ac8ac2800b56 *man/MIRit-package.Rd
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af0b0cda321ed1cb333121ec7c709be3 *man/MirnaExperiment.Rd
309b02248484992459512bfc5ed5a668 *man/addDifferentialExpression.Rd
bb84974b23444859336ce13ee99fa9a0 *man/augmentedPathways.Rd
5fe71fe24726e0549d80a5029d7751af *man/batchCorrection.Rd
080ccde317ec0e07c846869560fce71c *man/deAccessors.Rd
4dc9b4121d23a1e082aef92e9dc4b379 *man/deAnalysis.Rd
935e617601e2bb5af920445939820ac0 *man/enrichGenes.Rd
b1ee8d5781156fdd37d1b512ce4d1a08 *man/enrichTargets.Rd
d8905d205c7d45d37d852065079fb1c2 *man/enrichedFeatures.Rd
b4b9eb5c83d154ee6d790249504a1f2f *man/enrichmentBarplot.Rd
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81b78b3a16a25cb16489dbc093f6673e *man/enrichmentDotplot.Rd
33179e764224d14d366638c6258dae71 *man/enrichmentMethod.Rd
592d14803b56ae04bf97c228dc11264d *man/enrichmentMetric.Rd
71f53a246c8b98d5a768124910822b0d *man/enrichmentResults.Rd
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87805e8ee8480f474acf8cde7649485b *man/geneCounts.Rd
0e1a6555bf2e177b27af9bc719fd8248 *man/geneSet.Rd
54179faea75cb9fbc641da651b03e9f4 *man/getEvidence.Rd
49d81488ddaadca9296f9e50c8970512 *man/getTargets.Rd
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751622af8c6d68757bbb6c0f9ce6d606 *man/gseaRidgeplot.Rd
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4fa50a618792c2a1cca226b39da4f265 *man/listPathways.Rd
95c2bfe6315409c3207ed7783fac4e98 *man/loadExamples.Rd
d24e56b155bd4d344282eae1e67339f3 *man/mirVariantPlot.Rd
2e5f2332be13fe00f91d7b4c87c4257b *man/mirnaCounts.Rd
bd4832d9dc3bee8393881fe0839f6f77 *man/mirnaIntegration.Rd
e05e0130a6a7e40889969577707648fe *man/mirnaTargets.Rd
dab8b21504c331104a1a12604f2560df *man/pairedSamples.Rd
d31529ef3ff5b696cd277ac9ad7b9d67 *man/plotCorrelation.Rd
2de32d836148a8c4e3cc9b42bcd02d2f *man/plotDE.Rd
402b5883d8e0065a9d7582a7c11ae8c7 *man/plotDimensions.Rd
5ee124ebc69eafa3afe122912bac90f4 *man/plotVolcano.Rd
40f458259cb54157a84b9ec6e28c699f *man/preparePathways.Rd
857c00a77c5f88f66b00e226c9e43bdc *man/searchDisease.Rd
c9420b2a0d2415ecd3c429b055469e3f *man/setTargets.Rd
ba911680e5a0536ef08a487a8bd07273 *man/significantAccessors.Rd
21c117a4f9568d3f1dc137439374b1ef *man/supportedOrganisms.Rd
0d7c128a68fcb1f2ab31cc904a338fe8 *man/topologicalAnalysis.Rd
33c3b225df4e69abe53967f77ff0d4d6 *man/visualizeNetwork.Rd
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d4cf18d06688587c0e47e780b9be1380 *src/RcppExports.cpp
0cc4427e451a2ca4bc7b95e7ead4081c *src/pathwayScore.cpp
5509123684a72721c931ba5fc3ea50ba *tests/testthat.R
bf891764cb116c73cc6c1bbc69eea2a8 *tests/testthat/_snaps/topological-integration.md
ad7ae762ec72ee4abfc5c49b8d0420ce *tests/testthat/_snaps/utils.md
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36e78b7890f78a7c101b712939fc292a *tests/testthat/test-AllClasses.R
89e851a6a0bc1499dcb673d6eb51140f *tests/testthat/test-association.R
f76537291e532e21d276b031b8aa107a *tests/testthat/test-batch-correction.R
d65d6b84a007166c809d00c470530eba *tests/testthat/test-differential-expression.R
e820ea8e83c08b1e803269ac66a971c0 *tests/testthat/test-enrichment.R
34698c838a106b8c0fe2ece9d14730c6 *tests/testthat/test-integration.R
4f8de95b5298d85bb72bbaa579254bcf *tests/testthat/test-targets.R
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fd75c45ab14f22390fae2d82db06fe53 *tests/testthat/test-utils.R
3f75077c384ffd193c2e3713ca86dabe *vignettes/MIRit.Rmd
2e46cc9a2705a4ac6c00476a88572be4 *vignettes/references.bib
