e3f77c79ac1eacd96ed00dfd83ac3a82 *DESCRIPTION
f0cd7f9070cad67ea2d628630f232b47 *NAMESPACE
470e9a00db1f3f4751821197b40c3724 *NEWS.md
d023b009fe7158eaeb344fb85d3e88d0 *R/ConnectedComponent-class.R
11a21b9ea42666199ffb88d3755dd72f *R/PSM-class.R
dc6e526393dd2126a970f82755404713 *R/PSM-filter.R
0ef98a5af7f71ec10d9c0cf7f622342a *R/PSM-read.R
6808ef4318193f6cb603a4c0d17bea54 *R/PSM-reduce.R
7c631bcd9cfc4a9744e05cb18a379be1 *R/PSMatch-package.R
54bb3a2b074d491d426210a97ac3324d *R/adjacencyMatrix-accessors.R
7c511ebd4738eedd95cfa5cb136e15d5 *R/adjacencyMatrix-create.R
7901f4b661657e33d2fcbf1ba66423a2 *R/adjacencyMatrix-plot.R
ddc93a1a2b2556f0eb49c226a14691d7 *R/describe.R
c2638c17e92895004e7817d68c8136a8 *R/fragments-calculate.R
5072255c0e6ec334fe6f3f2a6fa08df1 *R/fragments-label.R
7f1ea01f15a0cef623288b088b0e03be *R/fragments-utils.R
6ac6fe089de746aa4884d91298bdbfcd *R/functions-mzR.R
2f9674320d004d74fa1f94bc94840317 *R/plotSpectra-PTM.R
06a19456a2c9f0ddad59663462d9037a *README.md
c6bfcac572900b715c75b19e65b3734f *build/vignette.rds
d351f1b963a2806d4d3cdf96d2db94fd *inst/CITATION
f601cc3c4649178e924afc670f5862b4 *inst/doc/AdjacencyMatrix.R
c5dd791c36e796946702981fc78226e0 *inst/doc/AdjacencyMatrix.Rmd
f6537055f164eff0ead97a95f4a8f24f *inst/doc/AdjacencyMatrix.html
a954c0ad0de120e09357f3d095870546 *inst/doc/Fragments.R
5d5f6d807ce4f42e60170abaefd17e4d *inst/doc/Fragments.Rmd
1981a5f67ffb8bb4b31b2d80530ca7b6 *inst/doc/Fragments.html
2a25614c5c3332c6954f5708495bf2c5 *inst/doc/PSM.R
c1f7f19f0a65653251cee2a1d9018e39 *inst/doc/PSM.Rmd
9bb3abd40d1d0da31d64f2fbfef26dcc *inst/doc/PSM.html
e58f1071844f4f6e6adce98921eeed4f *man/ConnectedComponents.Rd
9138c319916c9f1fca1e9d06381dfc02 *man/PSM.Rd
0accd55e2f55743a7b160c1724a36108 *man/PSMatch.Rd
353b60dc19038b29f83a812f2f09adf1 *man/adjacencyMatrix.Rd
39491abdf3771833e6d9400c1f154b62 *man/calculateFragments.Rd
1254317c08b27fc7dc3220947dc62ff8 *man/describeProteins.Rd
7701612c656c0c9faf44ec42721f0ab0 *man/filterPSMs.Rd
6499d980e72e3632a988cfd39523d2e8 *man/getAminoAcids.Rd
4b884c1b52837bb49c5bb516dbadaa06 *man/getAtomicMass.Rd
e05695f4b30d5e413ff4c96792f1d278 *man/labelFragments.Rd
3907cc38e8cee2decc6bf00c432ae754 *man/plotSpectraPTM.Rd
f56ae13782256ac316f67dc95c542980 *tests/testthat.R
8e233949437e997bcb6b86d3627c66e0 *tests/testthat/_snaps/plotSpectraPTM/deltamz-false.svg
667ea017fb04d44969b98d4f5bd2d076 *tests/testthat/_snaps/plotSpectraPTM/deltamz-true.svg
5a2a67df3f71041c0cd2224c54111305 *tests/testthat/_snaps/plotSpectraPTM/diff-col.svg
52f0b523106cfc2379c160544f8fe35c *tests/testthat/_snaps/plotSpectraPTM/usi-true.svg
0d635464668023729a1996e034d02cb1 *tests/testthat/test_ConnectedComponents.R
4410cd695e644f7d76007dd3c0d585c8 *tests/testthat/test_PSM.R
eff19d8fd550eeae725aa24132e1258c *tests/testthat/test_adjacencyMatrix.R
223d43914db0862299da595115b68583 *tests/testthat/test_describe.R
5d84fc4574553e0ee3e8d72f01b29567 *tests/testthat/test_fragments.R
d5e52dcd443c8fdc57ea93e9aa846b8e *tests/testthat/test_labelFragments.R
f17cfa2de0ca47f08f5a511c8cc0f457 *tests/testthat/test_plotSpectraPTM.R
c5dd791c36e796946702981fc78226e0 *vignettes/AdjacencyMatrix.Rmd
5d5f6d807ce4f42e60170abaefd17e4d *vignettes/Fragments.Rmd
c1f7f19f0a65653251cee2a1d9018e39 *vignettes/PSM.Rmd
