569eebd580ad5d88d40747931341e107 *DESCRIPTION
f4eaac8618c098f740195c17cbed7c17 *NAMESPACE
b63d65bc7848a4a6ef4a3fc3335c5459 *NEWS
d98e0c4495d287b29daa438213e61fd6 *R/AddValue.R
b9383902bec2bcc4f5cd3ad5ab5be1dc *R/AllClasses.R
76c907d756fd41c990d07ac62d8e4528 *R/AllGenerics.R
f3614cedbdf2571bbc1d6c4ebdefa64b *R/ConvVCF2GDS.R
32a42cec98f95b1cdc24080fad7c9ab5 *R/Conversion.R
75253b1d32c4621fa777bf1977e06a80 *R/Internal.R
dbec51c92d985c473968cf9c835a42fe *R/Methods-SeqVarGDSClass.R
341fab3cf156f8a7bd7691fae6058e89 *R/Methods.R
c5ada30620b705855c262609712ecb27 *R/Summary.R
bb4e1f045527956b68ab037f0d1ba44c *R/UnitList.R
e2855b27bd70da3df7bd6e40401fc509 *R/Utilities.R
56b20516136c87746c4b3f3270a855c8 *R/UtilsExport.R
8b5fb0eb22dd1e8dc491fad51eaeab7e *R/UtilsMerge.R
6cd956c2717afa1dd922dc1610e7ec60 *R/asVCF.R
8399851e42bdab8395670baeec1483bd *README.md
6b6ea6013b330b8835ae6e2a32a7dcc2 *build/vignette.rds
692623e629bc74bff8b33ccc8a9d9269 *data/KG_P1_SampData.RData
2af23b289bd04dfde5f7f45ea6725a8e *inst/CITATION
23af59bd6466b22cf9b89612222f3194 *inst/doc/OverviewSlides.Rmd
5cff30033fb8ea58fed065dbd9f98f17 *inst/doc/OverviewSlides.html
1090c1ca90a04afa549dc89d68baccd6 *inst/doc/SeqArray.R
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ea7bb64677badc0990b4e7d7f88beffa *inst/doc/SeqArray.html
da35c792490f1c6848278a00a4dfee63 *inst/doc/SeqArrayTutorial.R
4081a7945a26bac8b6d1bab6e9294c00 *inst/doc/SeqArrayTutorial.Rmd
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f634caf6278b05f6023cc23bcf7d9e1c *inst/extdata/1KG_phase1_release_v3_chr22.gds
2144679bb67fc7d30751e61c1d4cce83 *inst/extdata/CEU_Exon.gds
1dee226aad295e72467948b4ae62caf5 *inst/extdata/CEU_Exon.vcf.gz
0978a3ec42efe444574964a49b0843bd *inst/extdata/CEU_Exon.vcf.gz.csi
f73abdcdb92c98ab3dbb6ca8b66fe6ba *inst/extdata/Imputed_dosages.gds
39f29f05d541afe27fda50ae5cf082ea *inst/unitTests/data/Valid.RData
95c59c629b661e9f466d43abd8064a7d *inst/unitTests/test_asVCF.R
0d52a8c2cadbc0fc6ee3ccdabfc924ca *inst/unitTests/test_c.R
9e83fa6604e1e2f93b33647b34f2db3a *inst/unitTests/test_cpp.R
c78408dc793068252f08d9a9e979cd8f *inst/unitTests/test_examples.R
85270139310379d3a50c55b814b2dd12 *inst/unitTests/test_func.R
e1ad93ee3ef81e47f524f07bee0fa49f *inst/unitTests/test_utils.R
ce7571728238a97ad521678b69bbf1fd *man/KG_P1_SampData.Rd
9db5c1fe921ee78fad0d6b90dd55549d *man/SeqArray-package.Rd
69bd6b4f37c5503d2d621a4cbf882ec7 *man/SeqVarGDSClass-class.Rd
61642763334e3483ceaf6deef5f74a50 *man/seqAddValue.Rd
14aa302582869c0222aab364b2ea71a8 *man/seqAlleleFreq.Rd
b99c920d27a658b8b48edb328ef45a2b *man/seqApply.Rd
d6030fc6c195eaaa15d2277f62df6f4d *man/seqAsVCF.Rd
0a7155c1bbe9501896741dc883c6633f *man/seqBED2GDS.Rd
d928f81c2e4ef2b67d146abec892c412 *man/seqBlockApply.Rd
44d8bdf24fded0fba3e91dd867cb9c20 *man/seqCheck.Rd
99fc26ba68b3ca037bbf8d5ab8e4b0b6 *man/seqClose.Rd
8afd3fd4a44b577b36eb7ad64334560c *man/seqDelete.Rd
a7ab9ef8b3e79fb1ffcd37dff20c1171 *man/seqDigest.Rd
6016b444c7490cdd936a0fe48a28ab42 *man/seqEmptyFile.Rd
df1cc799b9580052a2e1eb633ac296b9 *man/seqExampleFileName.Rd
3b0f4c70d54ea48363432ce5c33bf090 *man/seqExport.Rd
506d56991d0a45e9adb082bfedc6704d *man/seqGDS2SNP.Rd
82a7394874773370a575f26772a1bacb *man/seqGDS2VCF.Rd
a08fd6ba1b3eae86127f90961758f63b *man/seqGet2bGeno.Rd
203706e6142cce09f3c51d3b9ee1b0f9 *man/seqGetData.Rd
bde91b89fc72c266a5eb9df0ecdcb0f7 *man/seqGetFilter.Rd
6c312365187e88f771297e37bcefccd0 *man/seqMerge.Rd
7ca8805b48e19abcd20cc15fed2cb7d9 *man/seqMissing.Rd
a4891d1055d988a0e46976568470945a *man/seqNewVarData.Rd
86042f3745249146344563e443013ca7 *man/seqNumAllele.Rd
d436f013a15c5efcc897bd4f89b7a418 *man/seqOpen.Rd
13d97448a3bb7aedf7c06deb55156f2c *man/seqOptimize.Rd
e965c88262b8d20988e717e2ad4e8684 *man/seqParallel.Rd
e13ddebc558da3bb199ffe9c1540685a *man/seqParallelSetup.Rd
b8c78874bd24a44968e009edcbf13c11 *man/seqRecompress.Rd
52d9e0a50d545d327350714563ede82e *man/seqResetVariantID.Rd
ce151c5c6ebd8488b3e0190a85cdf349 *man/seqSNP2GDS.Rd
8fb2d2a1f437e99de50348d1d24f3935 *man/seqSetFilter.Rd
857fb530b8a28c1eb0ebe11a0f2dfe90 *man/seqSetFilterCond.Rd
d21cd9315ab437283854324693466cad *man/seqStorageOption.Rd
5d0a2ecce6f217092bbd18086d2d2082 *man/seqSummary.Rd
9a1fa43c75a99c3bc469484c75d19028 *man/seqSystem.Rd
ed47447ab466797102a200d5f30cd9ad *man/seqTranspose.Rd
daa8f52029d843dd8129e6b9f299503d *man/seqUnitApply.Rd
3fa569e12eeb22e632fb8245ba75f7e9 *man/seqUnitFilterCond.Rd
fa63b1da2f6b1e8929917517ebcd5640 *man/seqUnitSlidingWindows.Rd
9fc06f7d2b85a3e698be0a9483706e59 *man/seqUnitSubset.Rd
0e75d08743371fb343ee7d6b96be31ed *man/seqVCF2GDS.Rd
fc4fddac91014207e95d48550b0369e0 *man/seqVCF_Header.Rd
21fe99f72dd7b6c4011c216c4f207685 *man/seqVCF_SampID.Rd
9ac423e7dbe4b63e9e52e5a8afebdc5e *src/ConvGDS2VCF.cpp
27f014d7938fb65d94dcfd931f2c79f4 *src/ConvToGDS.cpp
d4249a1f90067066c2f0c837a73af126 *src/ConvVCF2GDS.cpp
8dec3f8b01e43e86262d1093ab659566 *src/FileMerge.cpp
724732c7fffbf9a7e7c7e54a9324e909 *src/GetData.cpp
6b8733dd805e52a38ff5805486149834 *src/Index.cpp
b44a290138a1a61e72ebd41e0dd57ccb *src/Index.h
ec4b95209b2d7abe10ecfcc875a60f1e *src/LinkSNPRelate.cpp
1ed05138de7c7dfd03c07c8b0a8b731f *src/Makevars
0b09d37b0b4b82b91e9c4057fe0ea4f9 *src/Methods.cpp
adbe9e5d90fd0de31201ae50a846aecf *src/R_SeqArray.c
bf32822365d582938709126e8bb33cfc *src/ReadBySample.cpp
7f143c2a3ba458c420d3541ad6f232e5 *src/ReadBySample.h
4b9081acd16dc55a67a6e8db74e2e193 *src/ReadByUnit.cpp
03b99d8a26ce161dd939d46350d93033 *src/ReadByVariant.cpp
a913372970081bdc436a1e491b7d2e28 *src/ReadByVariant.h
f37c6da44af064bf2fc14efff4bb4bdc *src/SeqArray.cpp
f3e1a2233389243c874f34bb06f500f9 *src/pkg_test.cpp
372b9b3760fc945aba6a3927bb0ac834 *src/samtools_ext.c
03f06fb7a1a8e156e96165d7ac9311b2 *src/vectorization.cpp
226d6f87fd769b42a7764b9f39154abf *src/vectorization.h
ee5a9fdf768ac7861fdf9a9c0e171192 *tests/test.R
23af59bd6466b22cf9b89612222f3194 *vignettes/OverviewSlides.Rmd
f05a124e83c8cc23d11deaf39636b11d *vignettes/SeqArray.Rmd
4081a7945a26bac8b6d1bab6e9294c00 *vignettes/SeqArrayTutorial.Rmd
37a2a7baf8a9c0d56cbcb2358dc15d28 *vignettes/benchmark_rand_samp.svg
1399e727cfe248f7a8f898e42ffe71be *vignettes/seqarray_bib.bib
621d59fe6ecb5f3134fed47477750cc6 *vignettes/seqarray_workflow.svg
