bcb89299c176228e0604084298e86453 *DESCRIPTION
05e16201b953ace2eab846618ec6c802 *NAMESPACE
e4e8c5e609eee9581e07bae58689f6cc *NEWS.md
1f3484f1e124cf5720d7825de4dabca8 *R/StatModel-methods.R
9386f7d45da0c7e26ac57551b7aeee13 *R/accessors.R
ac2ed5d3e2e51fb038ee6fdf8896a215 *R/allGenerics.R
555591fd6a0a28547342b8afde10cf5a *R/calculateNormFactors.R
4d097ff88cb626ad2f54e41e1285467f *R/collect-plot-results.R
72adbfbd632223866bf6569b3f8825bd *R/data.R
959c73da6e3926e9159a79119e4a7e1e *R/hypothesisTest-methods.R
b6bdd7bb35c3d8a83b38739728fc24e3 *R/msqrob-framework.R
ee3994c199db23eed6bbb5d18049b76f *R/msqrob-methods.R
0c71d5d5d1c46aa74894d0aa8c7dc4ce *R/msqrob-utils.R
c4d60f7617b402d5068f949671e54e6a *R/msqrob.R
27cec46ec533bbcdc7af2dd532fc7526 *R/msqrobAggregate.R
acd1a2648678d8b4d2e44888d1fed013 *R/msqrobHurdle-methods.R
9f36f9a69a78b99c030fc2a2b654519f *R/msqrobQB.R
9de2e4454fc02ed961319cea718a003a *R/topFeatures.R
3af2ce711c6589723fa1abfb1c4bbae5 *README.md
a4edb86ef14c308afe616c44b0ec29e0 *build/vignette.rds
259bac3cb0c6e604e38b3ba5a8d36e00 *data/pe.RData
631b5b283296167e7c7876160302b7b3 *inst/CITATION
65a34dfde46e0fcb2131a676882454fd *inst/doc/cptac.R
17f823054e38badf17dccd541e9b4a8a *inst/doc/cptac.Rmd
af222a3524c69fc2e80914d79efe3866 *inst/doc/cptac.html
330f25c3c5078e51e9088633eb34c50c *inst/doc/staesSpikein-DIA-NN.R
31a606a46880bf54c36551f8de78a998 *inst/doc/staesSpikein-DIA-NN.Rmd
6b9cd409fc049ce553db42317c662661 *inst/doc/staesSpikein-DIA-NN.html
b45086c8add7fe8a1205ce2db9b7dff6 *inst/doc/staesSpikein-spectronaut.R
5eb7f9cf5858041b7ba9fddf7f8a5a11 *inst/doc/staesSpikein-spectronaut.Rmd
441632b1d4817ee437d4e2b4e08b9f33 *inst/doc/staesSpikein-spectronaut.html
95ae1ac21395c6a49ef8903f979a036a *man/StatModel.Rd
4c30c652bc8bd305fd2567efa3c78855 *man/createPairwiseContrasts.Rd
232e7d80d3c54bce396642b9e7a6a7d2 *man/data.Rd
0d639b7d089d0a589795706b8e9e13dc *man/dot-computeNfLogMedian.Rd
40f33f1910303af5525b828113b24d45 *man/dot-computeNfLogMedianOfRatios.Rd
5f197edc814d917efc030b3db390078d *man/hypothesisTest.Rd
c418df8a6d96cb0bfaa6562ec9c67601 *man/makeContrast.Rd
ae03e8f1dccad6ef1f2e128d79bdb8d1 *man/msqrob.Rd
30773deeb08043e50f0d7bb812a45850 *man/msqrobAggregate.Rd
a90a9fc8de9af05e768d53d832934d5a *man/msqrobCollect.Rd
217c04a234e0a2ee48196d1567a1a594 *man/msqrobGlm.Rd
d1b028c09de81d651cf828cdbe62dc6b *man/msqrobHurdle.Rd
2859b16ae9df6886d4c3091738ae1255 *man/msqrobLm.Rd
11a0fc3c61af58289537f889748c37fa *man/msqrobLmer.Rd
41d0cb9805d75428c07f9951ab78d5e8 *man/msqrobQB.Rd
beb8f65066696e6e95575c6dde7335f0 *man/nfLogMedian.Rd
93f2fb9526f9a0d2ea738e8f7a84792f *man/nfLogMedianOfRatios.Rd
1a1a744e7e53cb4dedb9c4f3ac01f7b6 *man/plotVolcano.Rd
21dd66b4af50c9f5132dee00f2166de9 *man/smallestUniqueGroups.Rd
7be3478ca9a90bd8aff121608e9a18ff *man/statModelAccessors.Rd
fd8cf7b39e0e98e0549a09ec84e727dd *man/statModelMethods.Rd
d6e72629eb9b14d22f035614612dd103 *man/topTable.Rd
c0af4e9c702b2e02d302cff104c5cd50 *tests/testthat.R
f194480c555f4a5c6f0a623f9a06c2c6 *tests/testthat/test_StatModel.R
17f823054e38badf17dccd541e9b4a8a *vignettes/cptac.Rmd
4b8fab1c3e51bfd1ae29526cd1e42108 *vignettes/msqrob2.bib
31a606a46880bf54c36551f8de78a998 *vignettes/staesSpikein-DIA-NN.Rmd
5eb7f9cf5858041b7ba9fddf7f8a5a11 *vignettes/staesSpikein-spectronaut.Rmd
