Package: wavFeatExt
Type: Package
Title: Wavelet-based Feature Extraction for Copy-number Alteration Data
Version: 0.99.21
Authors@R: c(
    person("Maharani Ahsani", "Ummi",
           email = "maharaniahsani@itb.ac.id",
           role = c("aut", "cre")),
    person("Arief", "Gusnanto",
           role = "aut")
  )
Description: Provides tools for simulating copy-number alteration (CNA) profiles,
    applying a non-decimated Haar wavelet transform to genomic signals, and extracting
    wavelet-derived features for use in supervised learning. Multiple machine learning
    methods including lasso and elastic-net regularisation, random forest, partial
    least squares, neural networks and k-nearest neighbours are implemented to train
    predictive models from genomic feature vectors. The workflow enables end-to-end
    analysis from CNA simulation to feature extraction and classification.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.6)
Imports: DNAcopy, wavethresh, MASS, randomForest, glmnet, pROC,
        neuralnet, e1071, class, caret, ica, stats, graphics, utils,
        pls, matrixStats
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: CopyNumberVariation, GenomicVariation, FeatureExtraction,
        Classification,
URL: https://github.com/maharaniau/wavFeatExt
BugReports: https://github.com/maharaniau/wavFeatExt/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/wavFeatExt
git_branch: devel
git_last_commit: 5d17e39
git_last_commit_date: 2026-04-20
Repository: Bioconductor 3.24
Date/Publication: 2026-04-24
NeedsCompilation: no
Packaged: 2026-04-25 00:47:07 UTC; biocbuild
Author: Maharani Ahsani Ummi [aut, cre],
  Arief Gusnanto [aut]
Maintainer: Maharani Ahsani Ummi <maharaniahsani@itb.ac.id>
