GEOsearch
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GEOsearch.
GEOsearch
Bioconductor version: 3.6
GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
citation("GEOsearch")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEOsearch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEOsearch")| GEOsearch: Extendable Search Engine for Gene Expression Omnibus | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, Software |
| Version | 1.1.4 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL(>=2) |
| Depends | R (>= 3.2) |
| Imports | RCurl, org.Hs.eg.db, org.Mm.eg.db |
| System Requirements | |
| URL |
See More
| Suggests | knitr, shiny, DT, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GEOsearch_1.1.4.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GEOsearch |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GEOsearch |
| Package Short Url | https://bioconductor.org/packages/GEOsearch/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |