HDF5Array
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see HDF5Array.
HDF5 back end for DelayedArray objects
Bioconductor version: 3.6
An array-like container for convenient access and manipulation of HDF5 datasets. Supports delayed operations and block processing.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages at fredhutch.org>
Citation (from within R, enter
citation("HDF5Array")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HDF5Array")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), methods, DelayedArray(>= 0.3.18), rhdf5 |
| Imports | utils, tools, BiocGenerics, S4Vectors, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | h5vcData, SummarizedExperiment(>= 1.5.6), GenomicRanges, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | beachmat, bsseq |
| Suggests Me | DelayedArray, DelayedMatrixStats, MultiAssayExperiment, scran, SummarizedExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HDF5Array_1.6.0.tar.gz |
| Windows Binary | HDF5Array_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | HDF5Array_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HDF5Array |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HDF5Array |
| Package Short Url | https://bioconductor.org/packages/HDF5Array/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |