MethTargetedNGS
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see MethTargetedNGS.
Perform Methylation Analysis on Next Generation Sequencing Data
Bioconductor version: 3.6
Perform step by step methylation analysis of Next Generation Sequencing data.
Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>
Citation (from within R, enter
citation("MethTargetedNGS")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethTargetedNGS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethTargetedNGS")| Introduction to MethTargetedNGS | R Script | |
| Reference Manual |
Details
| biocViews | Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.2), stringr, seqinr, gplots, Biostrings |
| Imports | |
| System Requirements | HMMER3 |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MethTargetedNGS_1.10.0.tar.gz |
| Windows Binary | MethTargetedNGS_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | MethTargetedNGS_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MethTargetedNGS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethTargetedNGS |
| Package Short Url | https://bioconductor.org/packages/MethTargetedNGS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |