chroGPS
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see chroGPS.
Visualizing the epigenome
Bioconductor version: 3.6
We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.
Author: Oscar Reina, David Rossell
Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>
citation("chroGPS")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chroGPS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chroGPS")| Manual for the chroGPS library | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Software, Visualization |
| Version | 1.27.3 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>=2.14) |
| Depends | R (>= 3.1.0), GenomicRanges, methods, Biobase, MASS, graphics, stats, changepoint |
| Imports | cluster, DPpackage, ICSNP |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | parallel, XML, rgl |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chroGPS_1.27.3.tar.gz |
| Windows Binary | chroGPS_1.27.3.zip |
| Mac OS X 10.11 (El Capitan) | chroGPS_1.27.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chroGPS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chroGPS |
| Package Short Url | https://bioconductor.org/packages/chroGPS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |