gcatest
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see gcatest.
Genotype Conditional Association TEST
Bioconductor version: 3.6
GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.
Author: Wei Hao, Minsun Song, John D. Storey
Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>
citation("gcatest")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gcatest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gcatest")| gcat Package | R Script | |
| Reference Manual |
Details
| biocViews | DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.2) |
| Imports | lfa |
| System Requirements | |
| URL | https://github.com/StoreyLab/gcatest |
| Bug Reports | https://github.com/StoreyLab/gcatest/issues |
See More
| Suggests | knitr, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gcatest_1.8.0.tar.gz |
| Windows Binary | gcatest_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | gcatest_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gcatest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gcatest |
| Package Short Url | https://bioconductor.org/packages/gcatest/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |