iSeq
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see iSeq.
Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
Bioconductor version: 3.6
This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.
Author: Qianxing Mo
Maintainer: Qianxing Mo <qmo at bcm.edu>
Citation (from within R, enter
citation("iSeq")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSeq")| iSeq | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Sequencing, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
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| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iSeq_1.30.0.tar.gz |
| Windows Binary | iSeq_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | iSeq_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSeq |
| Package Short Url | https://bioconductor.org/packages/iSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |