ndexr

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see ndexr.

NDEx R client library

Bioconductor version: 3.6

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Frank Kramer <frank.kramer at med.uni-goettingen.de>, Florian Auer <florian.auer at med.uni-goettingen.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at med.uni-goettingen.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Network, Pathways, Software
Version	1.0.4
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	BSD
Depends	igraph
Imports	httr, jsonlite, plyr, tidyr
System Requirements
URL	https://github.com/frankkramer-lab/ndexr
Bug Reports	https://github.com/frankkramer-lab/ndexr/issues

Suggests	BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ndexr_1.0.4.tar.gz
Windows Binary	ndexr_1.0.4.zip
Mac OS X 10.11 (El Capitan)	ndexr_1.0.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ndexr
Package Short Url	https://bioconductor.org/packages/ndexr/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive