ontoCAT
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ontoCAT.
Ontology traversal and search
Bioconductor version: 3.6
The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online.
Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky
Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>
citation("ontoCAT")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ontoCAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ontoCAT")| ontoCAT package | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Classification, DataRepresentation, Software |
| Version | 1.29.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | Apache License 2.0 |
| Depends | rJava, methods |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RMassBank |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ontoCAT_1.29.0.tar.gz |
| Windows Binary | ontoCAT_1.29.0.zip |
| Mac OS X 10.11 (El Capitan) | ontoCAT_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ontoCAT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ontoCAT |
| Package Short Url | https://bioconductor.org/packages/ontoCAT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |