simulatorZ
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see simulatorZ.
Simulator for Collections of Independent Genomic Data Sets
Bioconductor version: 3.6
simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSet and RangedSummarizedExperiment objects.
Author: Yuqing Zhang, Christoph Bernau, Levi Waldron
Maintainer: Yuqing Zhang <zhangyuqing.pkusms at gmail.com>
citation("simulatorZ")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("simulatorZ")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simulatorZ")| SimulatorZ | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, Survival |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1), methods, BiocGenerics, Biobase, SummarizedExperiment, survival, CoxBoost |
| Imports | graphics, stats, gbm, Hmisc, S4Vectors, IRanges, GenomicRanges |
| System Requirements | |
| URL | https://github.com/zhangyuqing/simulatorZ |
| Bug Reports | https://github.com/zhangyuqing/simulatorZ |
See More
| Suggests | RUnit, BiocStyle, curatedOvarianData, parathyroidSE, superpc |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | doppelgangR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | simulatorZ_1.12.0.tar.gz |
| Windows Binary | simulatorZ_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | simulatorZ_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/simulatorZ |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/simulatorZ |
| Package Short Url | https://bioconductor.org/packages/simulatorZ/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |