BiocWorkflowTools
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocWorkflowTools.
Tools to aid the development of Bioconductor Workflow packages
Bioconductor version: 3.9
Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.
Author: Mike Smith [aut, cre], Andrzej Oleś [aut]
Maintainer: Mike Smith <grimbough at gmail.com>
Citation (from within R, enter
citation("BiocWorkflowTools")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocWorkflowTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocWorkflowTools")| Converting Rmarkdown to F1000Research LaTeX Format | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ReportWriting, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4) |
| Imports | BiocStyle, bookdown, devtools, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocWorkflowTools_1.10.0.tar.gz |
| Windows Binary | BiocWorkflowTools_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | BiocWorkflowTools_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocWorkflowTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocWorkflowTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocWorkflowTools/ |
| Package Short Url | https://bioconductor.org/packages/BiocWorkflowTools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |