CAnD
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CAnD.
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Bioconductor version: 3.9
Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.
Author: Caitlin McHugh, Timothy Thornton
Maintainer: Caitlin McHugh <mchughc at uw.edu>
citation("CAnD")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAnD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAnD")| Detecting heterogenity in population structure across chromosomes with the "CAnD" package | R Script | |
| Reference Manual |
Details
| biocViews | GeneticVariability, Genetics, SNP, Software, StatisticalMethod |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, ggplot2, reshape |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CAnD_1.16.0.tar.gz |
| Windows Binary | CAnD_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | CAnD_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CAnD |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CAnD |
| Bioc Package Browser | https://code.bioconductor.org/browse/CAnD/ |
| Package Short Url | https://bioconductor.org/packages/CAnD/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |