flowClust
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowClust.
Clustering for Flow Cytometry
Bioconductor version: 3.9
Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
Author: Raphael Gottardo <raph at stat.ubc.ca>, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <gfinak at fhcrc.org>
Maintainer: Greg Finak <gfinak at fhcrc.org>, Mike Jiang <wjiang2 at fhcrc.org>
citation("flowClust")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowClust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowClust")| Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Clustering, FlowCytometry, ImmunoOncology, Software, Visualization |
| Version | 3.22.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.5.0) |
| Imports | BiocGenerics, methods, Biobase, graph, ellipse, flowViz, flowCore, clue, corpcor, mnormt, parallel |
| System Requirements | GNU make |
| URL |
See More
| Suggests | testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto |
| Linking To | |
| Enhances | |
| Depends On Me | flowMerge, flowTrans |
| Imports Me | CONFESS, flowTrans, flowType, openCyto |
| Suggests Me | BiocGenerics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowClust_3.22.0.tar.gz |
| Windows Binary | flowClust_3.22.0.zip |
| Mac OS X 10.11 (El Capitan) | flowClust_3.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowClust |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowClust |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowClust/ |
| Package Short Url | https://bioconductor.org/packages/flowClust/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |