graper
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see graper.
Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes
Bioconductor version: 3.9
This package enables regression and classification on high-dimensional data with different relative strengths of penalization for different feature groups, such as different assays or omic types. The optimal relative strengths are chosen adaptively. Optimisation is performed using a variational Bayes approach.
Author: Britta Velten [aut, cre], Wolfgang Huber [aut]
Maintainer: Britta Velten <britta.velten at embl.de>
citation("graper")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("graper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graper")| example_linear | HTML | R Script |
| example_logistic | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, Classification, Regression, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.6) |
| Imports | Matrix, Rcpp, stats, ggplot2, methods, cowplot, matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat |
| Linking To | Rcpp, RcppArmadillo, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | graper_1.0.0.tar.gz |
| Windows Binary | graper_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | graper_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/graper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/graper |
| Bioc Package Browser | https://code.bioconductor.org/browse/graper/ |
| Package Short Url | https://bioconductor.org/packages/graper/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |