Bioc.gff
This is the development version of Bioc.gff; to use it, please install the devel version of Bioconductor.
Read and write GFF and GTF files
Bioconductor version: Development (3.22)
Parse GFF and GTF files using C++ classes. The package also provides utilities to read and write GFF3 files. The GFF (General Feature Format) format is a tab-delimited file format for describing genes and other features of DNA, RNA, and protein sequences. GFF files are often used to describe the features of genomes.
Author: Michael Lawrence [aut], Hervé Pagès [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("Bioc.gff")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Bioc.gff")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 0.99.15 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | BiocBaseUtils, BiocGenerics, BiocIO, curl, GenomicRanges, IRanges, methods, Rsamtools, S4Vectors, Seqinfo, stats, utils, XVector |
| System Requirements | |
| URL | https://github.com/Bioconductor/Bioc.gff |
| Bug Reports | https://github.com/Bioconductor/Bioc.gff/issues |
See More
| Suggests | BiocFileCache, BiocStyle, GenomicFeatures, knitr, httr2, rmarkdown, rvest, tinytest, txdbmaker, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | S4Vectors, XVector, IRanges |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Bioc.gff |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Bioc.gff |
| Package Short Url | https://bioconductor.org/packages/Bioc.gff/ |
| Package Downloads Report | Download Stats |