MetaDICT
This is the development version of MetaDICT; to use it, please install the devel version of Bioconductor.
Microbiome data integration method via shared dictionary learning
Bioconductor version: Development (3.22)
MetaDICT is a method for the integration of microbiome data. This method is designed to remove batch effects and preserve biological variation while integrating heterogeneous datasets. MetaDICT can better avoid overcorrection when unobserved confounding variables are present.
Author: Bo Yuan [aut, cre]
, Shulei Wang [aut]
Maintainer: Bo Yuan <boyuan5 at illinois.edu>
citation("MetaDICT")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MetaDICT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | BatchEffect, Clustering, Microbiome, Sequencing, Software |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0) |
| Imports | stats, RANN, igraph, vegan, edgeR, ecodist, ggplot2, viridis, ggpubr, ape, cluster, matrixStats |
| System Requirements | |
| URL | https://github.com/BoYuan07/MetaDICT |
| Bug Reports | https://github.com/BoYuan07/MetaDICT/issues |
See More
| Suggests | knitr, rmarkdown, DT, ggraph, tidyverse, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | MetaDICT_0.99.3.tgz |
| macOS Binary (arm64) | MetaDICT_0.99.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaDICT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaDICT |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaDICT/ |
| Package Short Url | https://bioconductor.org/packages/MetaDICT/ |
| Package Downloads Report | Download Stats |