Package	Download_score
maCorrPlot	118
RGalaxy	49
gpls	253
hopach	340
MinimumDistance	151
DMRcate	1075
Mirsynergy	37
adSplit	141
metaseqR	44
affyPLM	978
flowQB	44
DART	127
edgeR	23760
BADER	122
SLGI	62
reb	52
shinyTANDEM	39
seqbias	73
graph	19243
SSPA	114
microRNA	216
casper	122
DNAcopy	4976
rtracklayer	20557
BiocStyle	5505
BRAIN	173
cellGrowth	40
flowFP	204
bgx	119
impute	10602
Biostrings	48775
BiocInstaller	239
XVector	49616
BiocGenerics	57494
tkWidgets	1392
ROC	1110
baySeq	483
blima	120
IdMappingAnalysis	43
TargetScore	129
dyebias	140
RMassBank	167
rTANDEM	44
MEDIPS	180
Rsubread	2163
MBCB	124
SPEM	144
CRImage	151
BGmix	44
plier	173
NuPoP	127
flowMatch	132
massiR	121
lapmix	115
HybridMTest	162
rGADEM	370
oligo	1646
dualKS	55
gaucho	32
DEDS	48
CNVrd2	125
ScISI	59
oneChannelGUI	55
gage	841
ChIPseeker	1958
ASSIGN	166
lmdme	126
tweeDEseq	180
GraphAlignment	117
affylmGUI	171
VanillaICE	253
flowPeaks	205
iASeq	110
R453Plus1Toolbox	146
GSEAlm	147
methylMnM	124
COPDSexualDimorphism	6
OSAT	143
AffyTiling	41
Cormotif	139
SMAP	70
GSRI	137
cancerclass	330
mosaics	219
RpsiXML	62
AllelicImbalance	160
CompGO	39
inSilicoMerging	38
pathview	4541
sapFinder	43
DEGseq	218
supraHex	378
fmcsR	265
npGSEA	121
interactiveDisplay	154
AnnotationHub	11537
parody	141
lumi	1217
OrderedList	137
genoCN	113
HCsnip	36
rnaSeqMap	50
LPEadj	73
Clonality	54
PREDA	138
ibh	116
maPredictDSC	121
openCyto	635
chroGPS	50
GeneGA	101
vtpnet	133
DASiR	29
MoPS	29
phenoTest	167
TEQC	145
MotIV	61
oligoClasses	1626
netresponse	137
flowWorkspace	1145
flowStats	478
RGSEA	123
MeSHDbi	269
chopsticks	151
RTN	218
GGtools	65
PathNet	126
Basic4Cseq	130
epivizr	166
DAVIDQuery	31
motifRG	45
ffpe	133
MineICA	133
meshr	174
msQC	0
EDDA	41
QUALIFIER	46
RedeR	325
CexoR	128
methyAnalysis	53
flowClean	242
simpleaffy	115
flowDensity	298
bigmemoryExtras	41
GeneSelector	48
charm	57
survcomp	1316
EBSeq	392
arrayMvout	131
clippda	137
panp	155
Genominator	53
CALIB	55
PGSEA	88
cellHTS	46
prot2D	33
virtualArray	14
SpacePAC	125
biosvd	43
XDE	148
convert	185
HiTC	193
HTSeqGenie	73
EBarrays	227
cqn	324
randPack	121
stepwiseCM	38
FRGEpistasis	106
iontree	35
GENE.E	32
SomatiCA	29
trigger	136
makecdfenv	222
a4Classif	154
CancerMutationAnalysis	50
MantelCorr	110
DTA	122
LMGene	52
manta	47
SpeCond	140
logitT	64
CNORode	151
DrugVsDisease	184
methVisual	48
plateCore	47
compcodeR	139
inSilicoDb	35
KEGGSOAP	22
nondetects	71
GraphPAC	126
ROntoTools	214
rols	437
DNaseR	9
SomaticSignatures	210
flowQ	41
RLMM	123
rHVDM	50
LiquidAssociation	130
MiRaGE	127
ASEB	120
Mulcom	134
maigesPack	81
biomvRCNS	133
CGHnormaliter	136
cn.farms	132
explorase	45
Rmagpie	138
gwascat	629
mcaGUI	51
nnNorm	132
pdmclass	49
RefPlus	78
rMAT	45
rSFFreader	36
SANTA	105
splots	234
sSeq	200
wavClusteR	117
MethylAid	144
DOQTL	30
cosmiq	194
GeneTraffic	11
PatientGeneSets	6
externalVector	14
MultiMed	108
GeneSpring	12
ballgown	575
STAN	43
AIMS	377
erccdashboard	138
GeneR	17
systemPipeR	1218
TSCAN	634
riboSeqR	122
simulatorZ	34
IdeoViz	126
MSGFgui	36
EBSeqHMM	56
focalCall	29
metagene	49
pepXMLTab	112
seqplots	40
GOsummaries	58
Metab	130
RdbiPgSQL	11
Rredland	8
stam	8
keggorth	7
GeneTS	7
gespeR	101
iPAC	140
logicFS	149
msmsTests	288
maanova	74
PROcess	155
DeconRNASeq	298
hypergraph	200
GWASTools	630
easyRNASeq	186
OCplus	150
gaia	53
NTW	114
NetSAM	152
ChIPsim	148
gcrma	1180
viper	746
BEAT	128
SamSPECTRAL	186
INPower	120
Rsamtools	23691
bumphunter	2699
DESeq2	22428
ggbio	1943
limma	34377
minfi	2381
annotate	17209
seqLogo	3813
mzR	3242
pcaMethods	5152
mzID	3004
Category	1653
genoset	56
ExpressionView	53
BiocCheck	1746
zlibbioc	54575
DESeq	185
widgetTools	1391
DynDoc	1386
ShortRead	6241
CNTools	177
pdInfoBuilder	175
copa	132
DriverNet	110
isobar	150
Rdisop	437
IPPD	41
genefu	360
ArrayExpressHTS	50
domainsignatures	41
VariantFiltering	145
macat	80
SIM	135
MassSpecWavelet	1679
altcdfenvs	164
RbcBook1	197
RefNet	38
CGHbase	419
iBMQ	96
GeneMeta	163
biovizBase	5151
metahdep	121
flowViz	997
fdrame	130
HELP	128
Icens	431
BitSeq	59
trio	166
PADOG	336
quantsmooth	644
pathifier	135
ARRmNormalization	122
sagenhaft	123
xps	45
SBMLR	134
scsR	40
CSSP	42
GGBase	59
multiscan	126
minet	766
CorMut	42
affycoretools	407
graphite	3172
DirichletMultinomial	4767
miRNApath	119
beadarray	671
RDAVIDWebService	65
BayesPeak	49
vbmp	154
DEGreport	614
h5vc	148
rpx	335
Rcpi	171
RNASeqPower	216
TSSi	44
Vega	39
twilight	154
Rariant	47
tigre	142
plgem	156
rbsurv	145
a4	158
GeneRegionScan	141
COMPASS	141
eiR	124
MassArray	106
pkgDepTools	72
OLIN	150
splicegear	52
STRINGdb	1346
puma	164
SplicingGraphs	147
pickgene	114
HTqPCR	120
CoverageView	121
SeqArray	933
TypeInfo	99
trackViewer	620
bioDist	282
ACME	165
mgsa	166
rama	53
ChIPseqR	155
spotSegmentation	46
segmentSeq	144
PCpheno	52
PECA	126
LPE	141
CAFE	132
RDRToolbox	181
SeqGSEA	230
HDTD	96
crlmm	297
phyloseq	5454
AnnotationFuncs	49
arrayQuality	222
globaltest	1781
flowPhyto	16
ctc	289
CNVtools	45
SAGx	62
HTSFilter	233
bgafun	50
bioassayR	133
codelink	155
BioSeqClass	52
RchyOptimyx	47
SimBindProfiles	73
biocGraph	259
flowBeads	125
messina	114
paircompviz	118
BiSeq	143
snm	171
imageHTS	63
spkTools	127
flowMap	67
BaseSpaceR	129
HTSanalyzeR	52
PLPE	129
monocle	3330
PING	142
joda	46
pcaGoPromoter	40
pvac	126
HEM	131
cghMCR	153
CORREP	60
customProDB	151
iterativeBMA	133
REDseq	158
idiogram	134
MiPP	135
eisa	57
qrqc	57
dks	106
qcmetrics	140
plrs	41
webbioc	139
flowFlowJo	23
oposSOM	148
rqubic	144
RTopper	132
a4Base	188
GOSim	107
CRISPRseek	183
iChip	129
NCIgraph	122
GEOsubmission	133
triform	48
r3Cseq	142
Repitools	320
birta	45
aCGH	245
gCMAPWeb	39
cobindR	47
pcot2	62
ArrayExpress	434
beadarraySNP	76
ChIPXpress	112
clst	126
spliceSites	38
OLINgui	132
geNetClassifier	172
IdMappingRetrieval	48
prada	63
ReadqPCR	229
rfPred	120
RWebServices	24
SeqVarTools	455
spliceR	38
cosmoGUI	14
Pviz	128
riboSeq	0
biocDatasets	10
shinyMethyl	164
fbat	11
Rdbi	16
rflowcyt	15
pamr	19
missMethyl	1051
quantro	292
switchBox	145
FourCSeq	34
MSGFplus	36
derfinderHelper	553
PSEA	57
GenomicTuples	113
derfinder	554
csaw	559
groHMM	114
facopy	25
ALDEx2	1213
COSNet	112
exonfindR	0
IMPCdata	94
MSnID	314
STATegRa	121
paxtoolsr	114
flowCHIC	123
Ruuid	16
GeneGroupAnalysis	10
RMAGEML	11
simulatorAPMS	11
pxr	0
nethet	124
PROPER	141
FlowSOM	1080
CGHcall	392
bridge	57
CopyNumber450k	24
PhenStat	120
bsseq	1475
MCRestimate	53
flowFit	39
GeneAnswers	61
sscore	67
msmsEDA	294
dexus	50
SCAN.UPC	192
flowClust	767
AtlasRDF	26
htSeqTools	48
GEOquery	9726
sangerseqR	824
apComplex	139
agilp	144
RPA	146
GenomicAlignments	23216
GenomicRanges	44865
VariantAnnotation	11637
SRAdb	453
GenomeInfoDb	55843
CellNOptR	211
GOstats	1505
GSEABase	8897
GenomicFiles	1251
biomaRt	22063
multtest	12000
siggenes	3229
goTools	134
vsn	5008
pRoloc	280
MeasurementError.cor	118
rTRM	171
S4Vectors	55451
geneplotter	4815
chipseq	647
clipper	148
SPIA	608
RBGL	9267
xcms	1616
hpar	293
GOTHiC	133
staRank	95
AGDEX	132
NetPathMiner	107
goProfiles	169
GeneExpressionSignature	148
FGNet	137
annotationTools	157
LBE	220
VegaMC	122
HilbertVis	206
TCC	265
stepNorm	131
maskBAD	126
Rtreemix	139
matchBox	104
ABSSeq	175
flipflop	38
GraphAT	145
PAnnBuilder	50
DSS	809
RamiGO	35
factDesign	136
Streamer	130
NOISeq	615
HMMcopy	366
ddCt	155
BAC	50
RUVSeq	912
nudge	42
qpcrNorm	140
metagenomeSeq	1613
dagLogo	141
coGPS	125
EBcoexpress	135
KEGGprofile	54
attract	151
marray	1907
plethy	54
geneRxCluster	127
SNPchip	58
RSVSim	127
ncdfFlow	1092
GeneticsDesign	48
cellHTS2	208
affyILM	146
Risa	200
CAMERA	482
NarrowPeaks	46
PROMISE	143
iBBiG	144
clusterStab	150
QDNAseq	366
qvalue	18681
alsace	40
flowPlots	115
methylumi	1522
flowMerge	172
ternarynet	114
Starr	50
DBChIP	51
MethylSeekR	197
Harshlight	144
intansv	143
fastLiquidAssociation	118
FunciSNP	45
diffGeneAnalysis	119
EasyqpcR	47
RBioinf	139
exomeCopy	244
betr	46
KEGGREST	36163
categoryCompare	136
CGHregions	150
affyContam	160
gaga	147
affyio	7977
affxparser	1569
KEGGgraph	5304
annmap	117
rTRMui	121
tspair	55
ConsensusClusterPlus	2990
RNAinteract	101
a4Preproc	193
OrganismDbi	2861
UNDO	116
a4Reporting	152
occugene	116
inveRsion	44
sizepower	129
genArise	118
predictionet	46
GEWIST	105
phenoDist	36
ELBOW	39
SQUADD	58
DiffBind	1106
cummeRbund	270
frma	175
rhdf5	20702
ArrayTools	56
MANOR	136
aroma.light	1899
Heatplus	495
RCytoscape	36
safe	653
MergeMaid	57
metaArray	56
GOSemSim	18909
copynumber	135
qpgraph	207
arrayQualityMetrics	471
sigaR	43
maSigPro	325
DEGraph	112
SLqPCR	130
gprege	41
iterativeBMAsurv	115
OTUbase	130
RmiR	51
hapFabia	126
xmapbridge	114
ABarray	156
RMAPPER	14
RCASPAR	104
PICS	161
farms	71
qusage	404
sRAP	44
DupChecker	24
savR	43
yaqcaffy	51
gCMAP	46
OutlierD	53
pvca	278
pathRender	136
a4Core	199
ChIPQC	383
BUS	132
neaGUI	25
nem	62
pRolocGUI	150
ppiStats	64
CNORfeeder	134
cleaver	246
pint	40
Rcade	57
snapCGH	93
MmPalateMiRNA	48
flowBin	130
BAGS	130
chipenrich	166
flowCyBar	108
affyPara	58
AffyRNADegradation	128
BiRewire	197
TransView	104
gaggle	75
GeneNetworkBuilder	137
plw	56
Rchemcpp	36
RRHO	140
SigFuge	123
waveTiling	46
maDB	22
Pbase	33
iFlow	9
makePlatformDesign	10
Polyfit	35
MEIGOR	130
mQTL.NMR	29
ClassifyR	346
M3D	31
hiReadsProcessor	123
proteoQC	32
MethylMix	147
SemDist	108
matchprobes	11
rain	150
MGFM	116
NGScopy	29
derfinderPlot	165
SigCheck	105
mvGST	27
seqTools	153
BridgeDbR	121
MAIT	186
MBAmethyl	91
flowcatchR	129
MPFE	96
specL	118
ToPASeq	34
arrayMagic	8
AnnBuilder	10
SemSim	5
RTools4TB	7
iSPlot	5
Rintact	8
RSNPper	11
saps	15
cpvSNP	116
rgsepd	107
gQTLBase	35
BeadExplorer	6
SAGElyzer	7
ChromoViz	7
QuartPAC	96
AnalysisPageServer	30
mdqc	136
MSnbase	3104
BrainStars	47
GlobalAncova	978
clusterProfiler	20433
CGEN	124
Rbowtie	488
fabia	208
hiAnnotator	136
triplex	135
SNAGEE	117
CSAR	146
les	135
omicade4	204
deepSNV	192
iClusterPlus	424
flowType	45
BiGGR	122
timecourse	150
goseq	1437
GSCA	116
EDASeq	1726
flowMeans	186
Rgraphviz	9264
affy	7875
AnnotationForge	2085
BiocParallel	41728
DEXSeq	1442
genefilter	11849
GenomicFeatures	18715
gmapR	176
Gviz	3375
IRanges	54350
preprocessCore	14190
VariantTools	181
PANR	123
DOSE	19388
AnnotationDbi	36221
cn.mops	269
BHC	90
illuminaio	2867
MLInterfaces	432
BSgenome	15888
Biobase	49430
biocViews	4423
GEOmetadb	267
flowUtils	72
MMDiff	32
TargetSearch	132
synapter	179
MIMOSA	51
flowCore	2751
BioMVCClass	140
made4	302
ReactomePA	2742
ASSET	151
MVCClass	146
BCRANK	146
MEDME	122
mmnet	32
piano	455
PSICQUIC	55
cisPath	108
sigPathway	69
OmicCircos	235
metaMS	215
CoCiteStats	133
fastseg	790
RIPSeeker	52
GOFunction	48
Roleswitch	44
RNAither	59
geneRecommender	129
seqCNA	59
chimera	50
ProCoNA	35
ssviz	121
coRNAi	42
GeneOverlap	591
daMA	126
jmosaics	26
flowCL	46
CNORfuzzy	136
GenomeGraphs	59
DFP	137
BiocCaseStudies	58
snpStats	2093
frmaTools	133
affycomp	161
unifiedWMWqPCR	90
TitanCNA	143
UniProt.ws	461
metaSeq	126
RTCA	129
BicARE	161
epigenomix	128
ChemmineR	830
CNAnorm	127
Sushi	75
sva	7403
genomeIntervals	212
affypdnn	55
wateRmelon	855
topGO	2837
clonotypeR	49
GLAD	232
annaffy	305
Resourcerer	22
Clomial	108
ChIPpeakAnno	1060
EBImage	2810
cleanUpdTSeq	134
PAPi	42
ReQON	65
ChAMP	705
nucleR	156
networkBMA	51
RankProd	288
spikeLI	112
ensemblVEP	142
GSVA	7244
ChemmineOB	327
DMRforPairs	54
rsbml	176
MotifDb	597
flowTrans	157
ITALICS	127
deltaGseg	114
ontoCAT	39
MSstats	539
BufferedMatrixMethods	129
hyperdraw	150
asmn	7
motifStack	710
flagme	118
GSAR	151
CAGEr	280
affyQCReport	63
SJava	21
CMA	191
BioNet	286
gene2pathway	15
HilbertVisGUI	91
BeadDataPackR	568
weaver	132
ReportingTools	585
ArrayTV	42
ssize	158
SwimR	33
Rolexa	34
proteinProfiles	102
LVSmiRNA	46
exomePeak	49
AgiMicroRna	197
exonmap	13
rBiopaxParser	193
ADaCGH2	143
AffyCompatible	71
BufferedMatrix	132
cycle	134
IsoGeneGUI	53
anota	141
roar	124
DECIPHER	2833
MLSeq	181
cosmo	15
GeneticsPed	150
ENVISIONQuery	44
MiChip	121
AffyExpress	59
ddgraph	38
girafe	163
prebs	126
tilingArray	183
TurboNorm	131
clstutils	127
CNEr	3420
TFBSTools	3487
procoil	125
ecolitk	145
hexbin	37
MLP	178
ExiMiR	128
TDARACNE	52
ccrepe	173
tRanslatome	215
KCsmart	137
Ringo	214
mBPCR	129
ampliQueso	35
genomes	136
iSeq	109
lol	36
lpNet	128
ChromHeatMap	137
mitoODE	39
COHCAP	60
GRENITS	111
antiProfiles	119
CNORdt	130
cnvGSA	130
CoGAPS	326
keggorthology	238
GeneSelectMMD	142
ontoTools	19
PWMEnrich	205
QuasR	372
NormqPCR	210
edd	18
limmaGUI	148
Mfuzz	1378
spade	31
Agi4x44PreProcess	20
GSReg	120
netbiov	58
interactiveDisplayBase	5457
metabomxtr	112
miRNAtap	191
compEpiTools	125
methylPipe	151
Rnits	113
GOexpress	138
RUVnormalize	122
rRDP	118
CoRegNet	59
regionReport	182
EnrichmentBrowser	550
CFAssay	101
kebabs	164
mygene	357
proBAMr	111
Rqc	310
polyester	131
ASGSCA	115
geecc	35
GenomicInteractions	428
GenoView	16
MBASED	115
OncoSimulR	118
PAA	127
pepStat	109
SNPRelate	1718
tracktables	206
FEM	41
SGSeq	334
snpMatrix	14
genomation	691
pgUtils	13
xmapcore	10
pairseqsim	3
Seqnames	0
GeneRfold	7
arrayQCplot	3
GeneticsBase	10
gQTLstats	37
mdgsa	34
affydata	5
gff3Plotter	4
TRONCO	127
seqPattern	789
CODEX	145
ChIPComp	115
CAnD	36
FISHalyseR	106
birte	26
Imetagene	30
dupRadar	159
RCy3	906
RareVariantVis	119
SIMAT	113
podkat	119
EnrichedHeatmap	600
Prostar	127
DAPAR	162
lfa	294
ENCODExplorer	34
erma	155
caOmicsV	26
EMDomics	132
Path2PPI	112
OperaMate	18
BEclear	128
SVM2CRM	28
GENESIS	374
AnnotationHubData	366
TIN	108
TPP	155
SICtools	99
RCyjs	118
FlowRepositoryR	34
goCluster	2
hierGWAS	115
GEOsearch	16
R4RNA	641
mAPKL	40
traseR	117
globalSeq	98
BrowserVizDemo	17
rCGH	146
INSPEcT	117
diffHic	159
systemPipeRdata	0
TimerQuant	0
exprExternal	3
dcGSA	95
biobroom	256
canceR	144
chromDraw	114
TarSeqQC	39
SISPA	43
MEAL	138
CNPBayes	25
rcellminer	136
motifbreakR	228
genotypeeval	41
GUIDEseq	135
cogena	135
DNABarcodes	179
LedPred	92
mogsa	261
pmm	103
sbgr	12
seq2pathway	207
XBSeq	32
ABAEnrichment	35
CopywriteR	49
acde	121
scde	412
soGGi	388
muscle	374
IONiseR	127
GoogleGenomics	24
variancePartition	953
sincell	114
pandaR	155
destiny	672
NanoStringQCPro	50
RTCGAToolbox	525
Rhtslib	24313
rnaseqcomp	116
similaRpeak	115
mirIntegrator	123
immunoClust	122
HIBAG	158
FamAgg	118
pwOmics	161
normalize450K	93
SWATH2stats	109
SummarizedExperiment	40008
ggtree	22236
applera	3
iSNetwork	4
bim	5
GenomeBase	2
reposTools	3
rfcdmin	4
SNAData	3
kimod	16
lpsymphony	933
ldblock	139
Guitar	182
regioneR	1883
LOLA	263
OmicsMarkeR	29
DChIPRep	31
gcatest	126
GeneBreak	116
miRcomp	114
sigsquared	110
FindMyFriends	33
edge	151
LowMACA	40
SNPhood	115
gdsfmt	2100
parglms	104
Cardinal	254
LEA	612
Oscope	124
MeSHSim	17
gtrellis	168
DMRcaller	141
coMET	99
ProteomicsAnnotationHubData	31
R3CPET	108
HilbertCurve	138
RTCGA	480
msa	1807
TCGAbiolinks	4416
eudysbiome	104
SELEX	122
CausalR	116
ComplexHeatmap	15862
MethTargetedNGS	108
BrowserViz	179
rGREAT	662
sidap	0
InPAS	127
mtbls2	0
widgetInvoke	6
mmgmos	4
multiClust	131
myvariant	129
diggit	110
DeMAND	95
metagenomeFeatures	31
iCheck	113
bamsignals	1021
NanoStringDiff	136
cytofkit	35
miRLAB	128
BBCAnalyzer	117
IVAS	125
CNVPanelizer	119
ensembldb	9762
skewr	105
conumee	210
GreyListChIP	1017
iGC	109
ELMER	224
PGA	32
OGSA	27
metaX	13
RiboProfiling	145
RUVcorr	114
RNAprobR	31
DiffLogo	122
ProtGenerics	11490
RnBeads	315
netbenchmark	28
SEPA	23
Prize	28
synlet	105
flowVS	154
RBM	112
MatrixRider	114
BubbleTree	132
fCI	107
RnaSeqSampleSize	149
subSeq	123
pathVar	37
y2hStat	3
iCOBRA	285
BioQC	160
biomformat	5499
transcriptR	117
profileScoreDist	96
ENmix	301
ropls	1155
consensusSeekeR	123
JunctionSeq	23
flowAI	561
tofsims	22
EWCE	270
tximport	3427
clustComp	111
scater	6979
cellity	111
ExperimentHubData	287
EpiCluster	0
PCAN	106
MethPed	101
OncoScore	110
genphen	22
CINdex	106
ISoLDE	82
isomiRs	160
Glimma	1052
MMDiff2	102
EGSEA	264
EGAD	110
diffloop	36
epivizrStandalone	104
clusterExperiment	321
CytoML	443
ccmap	125
normr	171
ASpli	145
DeepBlueR	38
recount	398
GRmetrics	131
alpine	42
MetaboSignal	157
YAPSA	128
BiocWorkflowTools	195
philr	191
gCrisprTools	108
bigmelon	111
synergyfinder	244
M3Drop	594
matter	245
TVTB	110
yarn	146
anamiR	15
CCPROMISE	107
proFIA	29
DelayedArray	42123
BUMHMM	124
sparseDOSSA	38
ramwas	121
gcapc	103
coseq	178
cellTree	28
sevenbridges	112
EmpiricalBrownsMethod	140
GenVisR	302
ROTS	232
chromPlot	219
ExperimentHub	7769
garfield	93
nucleoSim	103
psygenet2r	105
sscu	96
QUBIC	154
CountClust	25
EBSEA	95
BatchQC	152
BgeeDB	162
pcaExplorer	403
oppar	115
pqsfinder	150
Uniquorn	107
epivizrData	147
dSimer	14
covEB	98
esetVis	110
MetCirc	122
methylKit	656
rDGIdb	88
AMOUNTAIN	110
MGFR	105
CVE	18
LOBSTAHS	133
switchde	100
chromstaR	112
geneAttribution	105
CellMapper	97
statTarget	136
geneXtendeR	99
uSORT	104
MutationalPatterns	321
annotatr	482
BaalChIP	112
HelloRanges	147
phosphonormalizer	84
IWTomics	115
clusterSeq	109
MWASTools	171
RJMCMCNucleosomes	107
CrispRVariants	131
GSALightning	86
PanVizGenerator	23
ggcyto	826
splineTCDiffExpr	1
IHW	699
iCARE	173
SMITE	101
Mergeomics	109
contiBAIT	50
ExpressionAtlas	222
dada2	2397
doppelgangR	201
SwathXtend	102
HDF5Array	14806
Linnorm	222
AneuFinder	137
debrowser	154
miRNAmeConverter	107
scran	4718
DRIMSeq	299
DEFormats	263
MultiDataSet	1184
epivizrServer	139
pbcmc	11
LymphoSeq	114
ImmuneSpaceR	52
Director	75
covRNA	104
netprioR	90
FunChIP	49
geneplast	131
MADSEQ	106
fgsea	19217
maftools	2509
ASAFE	92
ImpulseDE	13
MODA	101
qsea	114
SNPediaR	89
RCAS	155
eegc	51
CancerSubtypes	80
LINC	16
SIMLR	212
MAST	2083
MoonlightR	127
psichomics	111
SPLINTER	99
StarBioTrek	47
yamss	110
flowPloidy	108
CancerInSilico	30
fCCAC	102
GOpro	147
KEGGlincs	114
chimeraviz	145
samExploreR	17
QuaternaryProd	107
Chicago	130
SC3	360
BasicSTARRseq	102
RGraph2js	104
metaCCA	136
MBttest	96
RImmPort	81
DNAshapeR	125
bacon	169
GenRank	15
biosigner	131
CONFESS	120
GMRP	100
recoup	106
MultiAssayExperiment	6295
GenoGAM	25
BadRegionFinder	105
splineTimeR	117
ClusterSignificance	100
odseq	103
genbankr	68
InteractionSet	1938
SpidermiR	54
CHRONOS	105
PureCN	197
Harman	175
msPurity	116
bioCancer	116
Pigengene	139
NetCRG	0
sights	106
crossmeta	167
GEM	98
GeneGeneInteR	98
ctsGE	103
BayesKnockdown	98
IPO	212
SVAPLSseq	15
GAprediction	93
PharmacoGx	277
Anaquin	103
signeR	121
readat	16
FitHiC	114
DEsubs	100
Pi	55
meshes	191
PathoStat	181
regsplice	100
SRGnet	18
crisprseekplus	39
BPRMeth	121
GRridge	30
RnaSeqGeneEdgeRQL	4
scone	148
scDD	168
treeio	21487
TCseq	452
splatter	444
ChIPexoQual	114
REMP	115
EventPointer	116
MIGSA	26
hicrep	13
motifcounter	100
twoddpcr	98
BioCor	119
AnnotationFilter	10923
STROMA4	35
semisup	94
methylInheritance	105
ATACseqQC	400
TReNA	4
GA4GHshiny	110
DASC	3
ndexr	105
miRBaseConverter	154
methInheritSim	109
motifmatchr	1376
Scale4C	109
Rhdf5lib	23180
phenopath	125
epivizrChart	105
BiocSklearn	129
scmap	242
RVS	95
AUCell	2548
TFHAZ	96
multiMiR	296
methyvim	17
ChIPanalyser	107
openPrimeRui	65
InterMineR	98
SeqSQC	190
TnT	76
panelcn.mops	118
rhdf5client	162
ontoProc	241
iterClust	40
stageR	207
tenXplore	90
vulcan	105
runibic	105
oncomix	95
iranges	1
biostrings	1
karyoploteR	813
MCbiclust	104
discordant	125
TCGAbiolinksGUI	36
sampleClassifier	107
GISPA	44
multiOmicsViz	46
RaggedExperiment	833
GenomicScores	664
ImpulseDE2	22
IMAS	102
epiNEM	154
NADfinder	107
RIVER	99
CATALYST	581
pgca	83
RITAN	112
IsoformSwitchAnalyzeR	284
RTNsurvival	103
scoreInvHap	106
OPWeight	96
HiCcompare	266
rexposome	129
GENIE3	1294
zFPKM	157
Onassis	22
cytolib	2623
SPONGE	92
DEP	577
MSstatsQC	106
Rbowtie2	287
TMixClust	121
BASiCS	166
apeglm	3684
openPrimeR	173
scfind	14
chromVAR	1187
bnbc	199
DelayedMatrixStats	16036
anota2seq	120
PathwaySplice	14
methimpute	102
JASPAR2018	5
scPipe	126
topdownr	109
pcxn	55
loci2path	104
TFEA.ChIP	126
MAGeCKFlute	353
annbuilder	0
goSTAG	108
DMRScan	84
geneClassifiers	94
Logolas	16
RTNduals	113
swfdr	107
cellscape	91
timescape	107
Organism.dplyr	413
rqt	82
IntEREst	106
MaxContrastProjection	16
branchpointer	124
GA4GHclient	123
banocc	114
netReg	20
flowTime	110
GenomicDataCommons	1037
pathprint	15
metavizr	25
basecallQC	110
ideal	132
PPInfer	216
heatmaps	294
TSRchitect	24
IntramiRExploreR	93
coexnet	23
mfa	133
SingleCellExperiment	16089
beachmat	15929
diffuStats	110
oneSENSE	31
EpiDISH	678
SCnorm	146
CEMiTool	183
seqcombo	93
miRsponge	12
amplican	128
seqCAT	110
cbaf	112
trena	33
TFARM	95
ANF	107
chromswitch	31
restfulSE	146
transcriptogramer	105
esATAC	129
ivygapSE	99
MetaCyto	118
PROPS	97
gep2pep	98
omicsPrint	106
LineagePulse	36
geoquery	1
affyplm	0
rhvdm	0
biobase	1
mimager	109
funtooNorm	110
POST	17
mapscape	82
DaMiRseq	132
BiocFileCache	25893
cydar	132
wiggleplotr	176
biotmle	106
BioMedR	5
BLMA	118
cellbaseR	118
msgbsR	107
zinbwave	874
RProtoBufLib	2624
ClusterJudge	99
consensusOV	133
microbiome	1762
DMCHMM	96
Doscheda	108
M3C	601
IrisSpatialFeatures	6
miRmine	52
MIRA	125
slalom	136
progeny	462
mpra	112
bcSeq	99
MetaNeighbor	133
signet	12
biocinstaller	1
flowclust	0
GOfuncR	335
bsgenome	0
shortread	0
RGMQL	63
DropletUtils	2479
RcisTarget	1090
omicplotR	105
Trendy	101
ChIPSeqSpike	18
Rgin	17
DominoEffect	101
kissDE	106
iSEE	518
martini	99
SEPIRA	31
GSEABenchmarkeR	123
iCNV	106
TissueEnrich	245
rWikiPathways	392
SparseSignatures	101
CytoDx	123
mdp	92
ccfindR	118
PowerExplorer	15
RNAdecay	81
SIAMCAT	162
GDSArray	235
onlineFDR	74
kmknn	0
topgo	0
MetID	99
coRdon	197
GeneAccord	21
HPAanalyze	172
hierinf	79
tximeta	997
NormalyzerDE	208
IsoCorrectoR	122
OMICsPCA	107
levi	78
LoomExperiment	612
countsimQC	282
FCBF	45
MTseeker	7
PrecisionTrialDrawer	18
snpmatrix	1
scFeatureFilter	91
drawProteins	201
omicRexposome	110
GDCRNATools	233
BiFET	105
CTDquerier	99
DEComplexDisease	23
gsean	103
BEARscc	77
iteremoval	19
TTMap	97
CellScore	96
ddPCRclust	121
scmeth	109
MDTS	88
GeneStructureTools	116
IMMAN	90
adaptest	13
ASICS	135
BioNetStat	78
RandomWalkRestartMH	56
BiocOncoTK	74
ORFik	200
OmaDB	236
iasva	103
sigFeature	293
FastqCleaner	120
gwasurvivr	128
icetea	95
sesame	809
slinky	18
mlm4omics	6
NBSplice	22
BUScorrect	96
consensus	88
nuCpos	89
celaref	110
brainImageR	6
EnhancedVolcano	5088
MetNet	98
plotGrouper	85
primirTSS	97
FoldGO	36
XINA	90
BiocPkgTools	163
ExCluster	80
gpart	22
cicero	250
breakpointR	106
consensusDE	105
AssessORF	184
QSutils	160
NeighborNet	32
AffiXcan	97
HIREewas	94
Wrench	1612
cTRAP	111
BDMMAcorrect	36
TimeSeriesExperiment	20
cntools	1
logitt	1
VCFArray	102
gostats	1
category	1
rgraphviz	2
bayseq	1
edger	1
mCSEA	137
CHARGE	13
pogos	138
srnadiff	91
enrichplot	19731
MetaGxOvarian	4
dmrseq	217
FELLA	163
phantasus	211
SummarizedBenchmark	40
perturbatr	16
decontam	1645
InTAD	101
hipathia	202
igvR	154
RSeqAn	118
sevenC	93
singleCellTK	340
singscore	1471
CAGEfightR	260
MSstatsQCgui	87
slingshot	1526
CAMTHC	11
Rmmquant	98
CellTrails	102
methylGSA	157
scruff	109
appreci8R	103
ipdDb	181
LRBaseDbi	107
miRSM	95
DEqMS	279
sparsenetgls	84
SIMD	95
COCOA	122
HiCBricks	169
tRNAdbImport	127
ProteoMM	114
artMS	120
compartmap	40
RNASeqR	16
MPRAnalyze	109
rScudo	93
plpe	0
DelayedDataFrame	99
deco	18
annotationdbi	1
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
seqlogo	0
roma	2
hmdbQuery	114
MACPET	20
powerTCR	321
GARS	105
vidger	152
DEScan2	110
diffcoexp	170
tRNAscanImport	107
Sconify	97
GateFinder	103
DEsingle	275
plyranges	1190
seqsetvis	120
missRows	97
diffcyt	466
TFutils	113
ChIC	24
SDAMS	103
TCGAutils	715
netSmooth	110
TxRegInfra	16
BiocVersion	60024
maser	160
Ularcirc	105
GIGSEA	85
qPLEXanalyzer	99
condcomp	7
ACE	131
OUTRIDER	207
strandCheckR	100
INDEED	76
SCBN	107
multiHiCcompare	161
REBET	93
BiocNeighbors	10937
ERSSA	99
glmSparseNet	213
mixOmics	2678
bayNorm	124
KinSwingR	94
abseqR	101
MSstatsTMT	286
universalmotif	882
tRNA	144
transite	101
PepsNMR	139
scTensor	108
decompTumor2Sig	145
ADAM	191
IsoCorrectoRGUI	93
DNABarcodeCompatibility	79
genomicranges	0
pkgdeptools	0
degseq	1
epihet	18
SpatialCPie	115
RCM	104
SMAD	85
Rcwl	116
BiocSingular	12721
alevinQC	120
fishpond	264
miRspongeR	85
qckitfastq	102
Structstrings	155
PoTRA	15
CNVRanger	123
GNET2	89
batchelor	3897
DeMixT	132
proBatch	29
TNBC.CMS	41
survtype	92
CellMixS	116
ngsReports	108
DiscoRhythm	108
profileplyr	254
scRecover	95
scMerge	495
SubCellBarCode	98
metagene2	112
netboost	83
gpuMagic	85
RNAmodR	123
RNAmodR.AlkAnilineSeq	97
TOAST	441
SQLDataFrame	90
scGPS	119
Autotuner	11
AlphaBeta	93
brendaDb	94
scBFA	99
muscat	532
SingleR	4230
gramm4R	9
deltaCaptureC	90
MOSim	101
idr2d	89
biscuiteer	108
CrossICC	5
ASpediaFI	20
scPCA	122
CNVfilteR	97
HCAExplorer	8
MMUPHin	177
DMCFB	95
scTGIF	193
mitch	92
geometadb	1
arrayexpress	0
CluMSID	95
widgettools	1
PCAtools	1226
divergence	85
doseR	96
scds	487
projectR	116
Xeva	159
mbkmeans	382
ADAMgui	104
BANDITS	118
HumanTranscriptomeCompendium	54
NBAMSeq	187
TreeSummarizedExperiment	2062
nanotatoR	38
CopyNumberPlots	161
GladiaTOX	86
lipidr	153
scAlign	20
RNAmodR.RiboMethSeq	101
ViSEAGO	144
PhyloProfile	109
BUSpaRse	224
ncGTW	167
Qtlizer	89
APAlyzer	114
waddR	80
target	95
Spaniel	113
signatureSearch	189
lionessR	97
PERFect	34
peakPantheR	95
pulsedSilac	13
BioTIP	111
GCSscore	22
netboxr	16
biomart	1
PAIRADISE	129
bigPint	28
Rhisat2	223
adductomicsR	99
topconfects	183
phemd	29
SpectralTAD	114
Modstrings	191
CoRegFlux	8
RcwlPipelines	116
CHETAH	130
evaluomeR	100
PrInCE	96
qsmooth	174
MOFA	10
ssrch	89
PAST	90
infercnv	1153
TPP2D	93
celda	772
pipeFrame	156
VennDetail	294
XCIR	12
KnowSeq	103
AWFisher	99
Maaslin2	959
SigsPack	89
GenomicOZone	114
calm	76
microbiomeDASim	89
SharedObject	136
pwrEWAS	25
debCAM	100
methylCC	110
flowSpy	8
MethCP	15
ssPATHS	87
tradeSeq	557
MACSQuantifyR	74
MSstatsSampleSize	24
oppti	84
RNAsense	84
cliqueMS	126
selectKSigs	89
onechannelgui	1
rsamtools	1
graper	87
cola	153
GAPGOM	18
OVESEG	107
cytofast	12
rmelting	95
Melissa	94
atSNP	121
BioMM	21
pram	97
DepecheR	107
CellBench	161
pathwayPCA	108
AMARETTO	192
hypeR	139
sitePath	97
sRACIPE	104
OmicsLonDA	22
RepViz	92
HCABrowser	10
dcanr	170
SynMut	90
StructuralVariantAnnotation	240
animalcules	245
enrichTF	49
mnem	153
MMAPPR2	26
MetaVolcanoR	56
SBGNview	189
RNAmodR.ML	97
gemini	80
circRNAprofiler	112
SCANVIS	102
HiLDA	103
IgGeneUsage	87
fcScan	104
VariantExperiment	78
proDA	257
sojourner	19
ReactomeGSA	240
LinkHD	100
ALPS	11
flowSpecs	117
SAIGEgds	131
blacksheepr	105
schex	178
DEWSeq	98
scDblFinder	1618
OmnipathR	708
methrix	124
fcoex	18
MEB	89
GmicR	103
gscreend	95
SEtools	205
brainflowprobes	43
BiocSet	339
ceRNAnetsim	78
MBQN	97
iterativebmasurv	0
cummerbund	1
geneticsbase	0
arrayqualitymetrics	0
gseabase	0
chippeakanno	0
CSSQ	88
PubScore	11
packFinder	95
BSgenome.Hsapiens.UCSC.hg19	8
frenchFISH	74
tscR	18
dittoSeq	1388
tidybulk	327
receptLoss	82
ribor	92
ribosomeProfilingQC	120
Dune	79
ROCpAI	79
vasp	7
HIPPO	89
BiocDockerManager	16
FRASER	147
glmGamPoi	4872
MsCoreUtils	3600
CoreGx	318
spicyR	195
distinct	250
scry	281
SingleCellSignalR	242
TADCompare	116
stats	1
DegNorm	95
SPsimSeq	189
Rtpca	101
dichromat	3
magrittr	9
sendmailR	1
scDataviz	115
RegEnrich	97
BiocIO	19674
zellkonverter	1496
Nebulosa	1232
idpr	102
ISAnalytics	76
ncRNAtools	92
proActiv	104
rsemmed	77
DEXICA	0
pageRank	88
vcfR	1
MSPrep	177
ChromSCape	99
NewWave	116
famat	96
MSstatsTMTPTM	7
marr	89
MSEADbi	7
MSstatsConvert	473
biocthis	258
VERSO	83
GSgalgoR	85
NanoMethViz	127
megadepth	164
ADImpute	109
SpatialDecon	225
flowGraph	78
RLassoCox	87
KEGG.db	1
datasets	1
grid	1
graphat	1
PFP	13
dearseq	237
BgeeCall	83
SimFFPE	84
DAMEfinder	97
DIAlignR	63
basilisk.utils	3235
ctgGEM	11
scTHI	84
eisaR	140
combi	119
rhdf5filters	19681
RNAAgeCalc	106
structToolbox	145
cytomapper	340
dpeak	26
metaseqR2	114
GGPA	80
methylSig	120
peco	89
TBSignatureProfiler	97
sparseMatrixStats	15574
rfaRm	84
ROSeq	96
CARNIVAL	176
spqn	86
weitrix	93
AnVIL	533
facets	0
parallel	1
tcltk	1
simplifyEnrichment	956
multicrispr	96
RadioGx	102
multiGSEA	166
MouseFM	179
PeacoQC	257
wpm	96
brew	35
RColorBrewer	9
MultiBaC	111
escape	430
transomics2cytoscape	103
SpatialExperiment	4505
uncoverappLib	96
QFeatures	2551
hummingbird	81
RIPAT	29
Rfastp	173
metabolomicsWorkbenchR	110
UMI4Cats	92
ANCOMBC	1228
SCATE	21
FilterFFPE	97
tomoda	92
aggregateBioVar	105
bambu	300
CellaRepertorium	35
GWAS.BAYES	94
densvis	1352
dasper	16
AnVILBilling	83
ExperimentSubset	108
tidySingleCellExperiment	233
FScanR	20
AlpsNMR	116
SplicingFactory	79
mina	74
bnem	98
UTAR	0
CNVgears	34
ttgsea	88
mumosa	106
BumpyMatrix	484
omicsmarker	0
prostar	0
rlang	419
base	1
grDevices	1
calib	0
simpleSingleCell	0
sigpathway	1
PoDCall	68
biobtreeR	80
easyreporting	91
EnMCB	94
scMAGeCK	12
reconsi	86
netDx	55
struct	166
GeneTonic	329
clustifyr	183
SCOPE	101
TreeAndLeaf	150
rrvgo	535
cmapR	438
TAPseq	99
exomePeak2	88
EpiTxDb	106
GCSConnection	10
sarks	86
NoRCE	92
BRGenomics	89
MatrixGenerics	41096
SynExtend	95
scClassify	148
scHOT	95
optimalFlow	101
snapcount	94
PloGO2	47
CiteFuse	115
sangeranalyseR	216
org.Hs.eg.db	16
flowCut	151
BrainSABER	15
splines	1
stats4	1
tools	1
utils	1
ToxicoGx	109
corral	107
fmrs	131
HCAMatrixBrowser	4
CytoTree	16
scCB2	96
pipeComp	95
labeling	65
ILoReg	91
ggtreeExtra	1094
MesKit	116
HPAStainR	14
Omixer	89
VplotR	97
Spectra	1880
periodicDNA	84
ResidualMatrix	3719
preciseTAD	99
GenomeInfoDbData	19
PhosR	153
MethReg	86
SeqGate	89
systemPipeShiny	98
GCSFilesystem	9
BayesSpace	283
MSstatsPTM	214
microbiomeExplorer	108
musicatk	118
AnVILPublish	94
SCFA	81
customCMPdb	102
MOGAMUN	87
tidySummarizedExperiment	342
moanin	200
ReactomeContentService4R	100
VarCon	82
geneLenDataBase	11
hgu133plus2.db	7
GO.db	15
Homo.sapiens	6
GenomicDistributions	136
pga	0
hicbricks	0
rstudio	1
string	0
methods	1
compiler	1
degraph	1
NPARC	107
CeTF	115
pmp	141
rSWeeP	92
basilisk	3370
MEAT	92
gmoviz	91
ExploreModelMatrix	214
MicrobiotaProcess	505
randRotation	78
GPA	88
MOMA	95
iSEEu	162
OpenStats	79
timeOmics	121
regutools	110
LACE	178
cBioPortalData	384
BSgenome.Hsapiens.UCSC.hg38	11
scuttle	9279
getDEE2	89
GSEAmining	97
padma	95
GWENA	246
bitops	109
bluster	5654
infinityFlow	116
rebook	158
snifter	157
POMA	198
TimiRGeN	36
recountmethylation	115
nearBynding	86
TileDBArray	104
msImpute	232
velociraptor	174
Informeasure	83
rnaEditr	98
spatialHeatmap	227
scp	240
scRepertoire	605
lefser	531
recount3	297
cfDNAPro	113
metabCombiner	133
MOFA2	531
Herper	146
metapod	4766
shinyepico	100
PFAM.db	12
TxDb.Hsapiens.UCSC.hg19.knownGene	6
censcyt	94
GEOfastq	107
nempi	94
affio	0
ga4ghclient	0
cindex	0
graphics	1
CAEN	80
CONSTANd	83
scClassifR	6
NanoStringNCTools	397
InteractiveComplexHeatmap	402
ORFhunteR	88
TrajectoryUtils	1926
MACSr	126
Summix	81
HiCDCPlus	125
TrajectoryGeometry	72
OSCA.workflows	31
midasHLA	85
clusterprofiler	1
MsBackendMgf	455
OSCA.intro	53
geva	86
CelliD	216
BioNERO	263
fedup	85
CIMICE	86
methylscaper	117
epidecodeR	84
conclus	10
CNViz	92
cellmigRation	79
mirTarRnaSeq	97
tricycle	234
FEAST	154
DExMA	96
supersigs	170
multiSight	14
quantiseqr	524
fgga	83
SingleMoleculeFootprinting	98
MatrixQCvis	188
GenomicSuperSignature	102
epigraHMM	95
msqrob2	185
rawrr	205
spiky	81
BUSseq	95
dStruct	81
svaNUMT	91
Dino	91
segmenter	101
spatzie	80
NanoTube	114
NeuCA	54
scanMiRApp	86
enhancerHomologSearch	84
orthogene	345
metapone	90
ggmsa	543
nullranges	182
transformGamPoi	111
biodbHmdb	98
CyTOFpower	61
benchdamic	102
surfaltr	83
netOmics	25
txcutr	83
RLSeq	29
MSstatsLiP	114
RiboCrypt	88
scatterHatch	79
sccomp	127
BSgenome.Hsapiens.NCBI.GRCh38	1
KaryoploteR	0
SCArray	106
ramr	86
GeomxTools	402
planet	209
fobitools	95
Travel	5
dce	92
OSCA.advanced	13
MsBackendMassbank	112
hca	92
miQC	144
OSCA	6
PhenoGeneRanker	67
dir.expiry	3316
memes	240
CytoGLMM	101
condiments	132
cyanoFilter	91
wppi	67
MungeSumstats	968
treekoR	103
cbpManager	89
XNAString	88
BloodGen3Module	131
vissE	140
KBoost	74
decoupleR	1208
HGC	93
MQmetrics	21
MSstatsLOBD	85
m6Aboost	81
DelayedTensor	90
scanMiR	106
FLAMES	113
FindIT2	92
mitoClone2	109
iPath	75
GEOexplorer	95
BentoBox	0
methylclock	191
spatialDE	130
BioPlex	8
traviz	75
ProteoDisco	88
MsBackendRawFileReader	98
biodbKegg	72
biodbUniprot	84
scTreeViz	88
NxtIRFcore	14
synapsis	77
GeoDiff	104
sparrow	343
pairkat	113
pengls	74
hermes	245
netZooR	92
GBScleanR	109
RiboDiPA	90
SOMNiBUS	84
autonomics	88
PhIPData	104
OSCA.basic	19
lisaClust	166
mia	1446
drugTargetInteractions	93
barcodetrackR	90
interacCircos	90
sechm	190
awst	87
diffUTR	78
POWSC	99
Rbec	92
DelayedRandomArray	95
ReactomeGraph4R	53
systemPipeTools	91
HubPub	138
cosmosR	119
RCSL	90
csawBook	4
ebimage	1
cageminer	98
scShapes	80
VAExprs	79
genomicInstability	98
veloviz	80
ggspavis	221
scAnnotatR	198
rGenomeTracks	86
MicrobiomeProfiler	157
imcRtools	253
ODER	10
svaRetro	93
epistack	86
biodbLipidmaps	38
Cepo	159
deconvR	108
cliProfiler	85
mosbi	85
TargetDecoy	96
ggmanh	263
rprimer	104
CNVMetrics	88
BOBaFIT	95
coMethDMR	102
crisprBase	158
VGAM	15
mulcom	1
IlluminaHumanMethylation450kmanifest	6
ichorCNA	0
ScaledMatrix	12509
MsFeatures	1401
MetaboCoreUtils	1805
VaSP	98
TraRe	12
satuRn	284
MAGAR	137
mfuzz	0
ComPrAn	84
ModCon	74
PDATK	172
IRISFGM	21
InterCellar	104
sitadela	85
miaViz	302
SingleRBook	3
airpart	103
LRcell	85
ptairMS	83
ppcseq	91
DeepPINCS	88
immunotation	86
miloR	418
tLOH	84
granulator	144
mistyR	129
biodb	163
epialleleR	96
bayespeak	0
OSCA.multisample	15
csdR	80
BindingSiteFinder	91
MAI	95
plotgardener	259
bugsigdbr	200
rmspc	78
tanggle	107
scReClassify	96
atena	93
tripr	82
biodbChebi	101
HPiP	88
monaLisa	196
cytoKernel	100
TRESS	99
easier	121
CellBarcode	104
Cogito	87
microbiomeMarker	371
miaSim	107
targetsearch	0
OGRE	93
MSA2dist	128
lineagespot	84
beer	92
MsBackendMsp	364
Motif2Site	84
MobilityTransformR	68
cellxgenedp	115
Rbwa	90
seqArchR	93
qsvaR	180
bandle	93
SPOTlight	279
epimutacions	92
msnbase	1
APL	180
DifferentialRegulation	89
Macarron	127
STdeconvolve	147
EpiCompare	61
RgnTX	83
ScreenR	77
SUITOR	73
PanViz	49
EpiMix	88
mslp	71
flextable	24
pillar	65
emmeans	40
mathjaxr	1
Seurat	49
ggnewscale	55
IlluminaHumanMethylationEPICmanifest	6
ontologyIndex	20
parsnip	14
reprex	73
rrcov	23
rsample	18
RSQLite	179
PSCBS	7
aroma.affymetrix	9
sitmo	7
BASiCStan	119
SimBu	179
ggthemes	14
ggseqlogo	17
poweRlaw	11
extraDistr	9
TFMPvalue	8
seriation	33
heatmaply	14
RcppArmadillo	188
rstudioapi	136
oncoscanR	90
haven	57
infer	13
waldo	173
carData	2
parallelly	196
uuid	222
gtools	31
Hmisc	36
htmlTable	28
survival	248
bslib	326
mgcv	183
stringr	95
brio	163
stringi	322
colorspace	144
lme4	91
rprojroot	72
pkgbuild	146
shinydashboard	3
modeldata	12
pROC	24
paws.database	15
paws.management	15
paws.analytics	15
pls	3
beeswarm	1
robust	19
rmio	0
binom	0
fit.models	0
prodlim	35
classInt	21
coin	1
reshape2	3
xtable	3
withr	249
markdown	82
ggrepel	229
TH.data	113
TeachingDemos	2
slam	10
gtx	0
hardhat	47
kableExtra	20
polynom	2
selectr	1
gam	12
mvtnorm	84
pcaPP	21
rappdirs	2
jsonlite	226
CVST	1
foreach	4
SMVar	7
metaMA	7
fresh	13
BSgenome.Mmusculus.UCSC.mm10	6
RSpectra	82
ISLET	87
EnsDb.Hsapiens.v79	6
leidenAlg	1
dynamicTreeCut	1
VDJdive	87
fs	223
pio	0
phangorn	4
plot3D	3
plotrix	7
pim	0
PresenceAbsence	0
pulsar	0
qgraph	1
questionr	1
readbitmap	0
RCircos	0
randomForestSRC	2
ratelimitr	0
RGCCA	0
rlecuyer	0
RItools	2
rmeta	1
rncl	1
rotl	2
Rttf2pt1	1
Rssa	0
seewave	0
ShatterSeek	0
sna	2
som	1
smoother	1
spatstat.linnet	5
spatstat	5
spatstat.data	27
spgs	0
statnet	0
SuppDists	3
svd	2
tensor	1
tictoc	10
tkrplot	0
TFisher	1
TINC	0
tokenizers	3
tree	1
tripack	0
uniqueAtomMat	0
tseries	9
vioplot	1
WeightSVM	0
WriteXLS	4
waveslim	1
IRdisplay	1
yulab.utils	60
aggregation	0
abe	0
animation	1
bacr	0
BatchJobs	1
bartMachineJARs	0
beanplot	1
bibtex	1
bigmemory.sri	3
bigsparser	1
bindrcpp	1
bst	0
ccube	0
BWStest	2
clusterRepro	0
cNORM	0
CNAqc	0
clusterGeneration	1
zip	178
gh	141
gitcreds	15
rversions	16
mailR	0
pracma	18
fastmatch	17
googledrive	23
later	147
reactome.db	11
R6	21
iSEEhub	180
MsExperiment	1369
BH	219
scifer	91
curl	385
SpatialFeatureExperiment	205
mc2d	2
geometry	1
magic	1
backports	127
caTools	20
numDeriv	1
vsclust	84
survminer	6
assertthat	2
doParallel	3
R.methodsS3	4
R.oo	59
R.utils	41
RBesT	1
RMySQL	3
downloader	1
ChAMPdata	1
ruv	1
prettydoc	1
metabinR	73
glmmADMB	0
INLA	0
IRkernel	1
RESOLVE	87
Statial	100
diffobj	2
lmtest	4
rstatix	16
doubletrouble	99
stJoincount	94
microSTASIS	81
svglite	21
nasapower	1
biglm	4
dendsort	0
lmomco	1
SPEI	1
soilDB	1
lmerTest	1
hierfstat	0
pegas	2
boot	89
IFAA	80
proxy	2
ellipse	8
xts	33
fastGHQuad	1
fastICA	53
fuzzyjoin	0
labelled	19
corrplot	40
covr	4
densityClust	1
rcmdcheck	2
dials	16
shinystan	1
rstantools	12
speedglm	0
LiblineaR	10
PKI	8
ROCR	2
RhpcBLASctl	1
SQUAREM	1
psych	122
qvcalc	0
ranger	27
rio	19
ggforce	32
askpass	138
clue	58
crrry	0
PsNR	0
vaplot	0
lixoftConnectors	0
crul	115
csSAM	0
ctmle	0
data.tree	5
DHARMa	1
d3Network	0
cvAUC	1
debugme	1
DistributionUtils	2
dpclust3p	0
ergm	1
emulator	0
extRemes	0
fail	0
filehash	1
FField	0
fftwtools	1
fishMod	0
FME	0
fpp	0
formula.tools	1
gbm	107
geiger	0
gbRd	1
gapfill	0
gee	1
ggstance	3
ggcorrplot	1
glasso	0
gomms	0
glmmTMB	3
gmm	1
heatmap.plus	0
httpcode	1
huge	0
hunspell	44
JBTools	0
imager	1
ipmisc	0
jomo	1
jiebaRD	0
kSamples	1
LearnBayes	1
lobstr	2
metaBMA	0
mg14	0
metadat	1
mitools	1
minerva	0
mockery	1
misc3d	1
mlogit	0
multcompView	11
mpath	0
natserv	1
mvnfast	0
NEMO	0
nnls	14
OceanView	0
nor1mix	1
neuRosim	0
oompaBase	6
optmatch	3
pairwiseComparisons	0
parsedate	3
GenomelnfoDb	0
admiral.test	0
admiral	2
blogdown	0
gganimate	1
admiraldev	2
distill	0
golem	11
GA	112
httr2	163
av	1
narray	0
pak	3
mrgda	1
mlr3misc	1
ndjson	0
qpdf	3
NMproject	1
reactlog	0
Rwave	6
tables	1
RSiena	0
Tplyr	2
registry	1
diceR	1
clusterCrit	1
PreciseSums	0
ids	1
forrester.metadata	0
storr	0
creatr	0
leidenbase	11
morpheus	1
rgeos	14
listenv	54
seqArchRplus	82
mantelcorr	0
rbibutils	12
mlmm.gwas	0
CHORD	0
DO.db	8
echarts4r	4
fishHook	1
helperMut	0
ieugwasr	0
RCurl.back	0
smartdata	0
TxDb.Mmusculus.UCSC.mm10.ensGene	0
cmprsk	4
ggpubr	19
ccaPP	0
quadprog	1
base64enc	1
changepoint	22
asciicast	1
dlstats	0
bs4Dash	6
gt	44
mapdata	1
keras	3
mrgvalidate	1
paradox	1
nlmixr2extra	1
nlmixr2plot	1
Rcsdp	0
V8	90
RODBC	2
repurrrsive	0
RsSimulx	0
xpose	0
rxode2	1
gettz	0
RcppCCTZ	1
BiocInstallerf	0
Cairo	11
csv	1
coro	1
corrr	0
WeightIt	3
flexsurv	1
geepack	8
gnm	0
JM	0
mrgsolve	1
mlr3measures	2
NonCompart	1
RPostgreSQL	4
shiny.router	1
splines2	1
transformr	0
sortable	3
RsSimulx.1	0
Rsmlx.2	0
ncdf4.1	0
Rsmlx.1	0
rvcheck	3
MNP	0
ATE	1
BlakerCI	0
viridislite	0
preprocesscore	1
comapr	93
TEKRABber	171
LinTInd	86
crisprBowtie	153
xcore	81
MBECS	103
UCell	1514
rgoslin	135
PSMatch	1893
TREG	84
GenProSeq	75
nnSVG	181
fastreeR	106
pareg	63
ompBAM	133
GRaNIE	152
qmtools	90
crisprBwa	80
tomoseqr	78
iSEEhex	156
syntenet	133
CTSV	94
scDDboost	84
SpliceWiz	150
eds	381
HiCDOC	105
crisprDesign	141
deseq	1
GenomAutomorphism	77
xfun	392
DT	97
arrow	21
abaenrichment	0
tibble	18
ggdendro	16
metap	11
scattermore	13
sctransform	10
aws.signature	6
rainbow	10
fda	11
BSgenome.Cfamiliaris.UCSC.canFam3	6
googlesheets4	24
paws.common	123
sn	11
rmarkdown	351
nlme	210
ExomeDepth	1
R.huge	8
aroma.apd	9
rARPACK	5
dqrng	49
zCompositions	11
dbplyr	200
latticeExtra	5
hwriter	1
scrime	6
estimability	31
qlcMatrix	16
PRROC	6
qap	10
GenABEL	1
GenABEL.data	1
EasyCellType	106
viridisLite	39
ATACseqTFEA	94
forcats	17
shinyWidgets	72
shinyjqui	1
XML	105
DMRcatedata	1
future	188
httpuv	268
umap	11
tidyselect	268
car	33
cli	355
cpp11	252
glue	206
clipr	6
credentials	69
xml2	95
shinyBS	7
viridis	188
lattice	154
strucchange	1
paws.networking	15
paws.machine.learning	15
paws.application.integration	15
paws.customer.engagement	15
pbmcapply	1
bbmle	12
bigutilsr	0
rapidjsonr	1
profileModel	0
lubridate	84
coda	19
lava	45
timeDate	38
GlobalOptions	1
irlba	13
isoband	26
yaml	279
cowplot	75
ggridges	29
leiden	20
pbapply	21
argparse	12
rly	0
geoR	0
splancs	11
glmnet	16
gmodels	1
glmnetUtils	9
tidymodels	13
lambda.r	1
matrixStats	168
mime	8
sys	121
GetoptLong	1
rjson	48
lifecycle	108
EnsDb.Hsapiens.v86	8
crisprVerse	112
FlowSorted.Blood.EPIC	10
shinydashboardPlus	18
venn	10
sccore	1
grr	1
RcppSpdlog	1
plot3Drgl	0
pspline	2
preseqR	1
RInside	0
ritis	0
RJSONIO	13
ROI	1
Rmpi	1
RSNNS	0
rredlist	1
Rserve	1
Rook	0
rzmq	1
SDMTools	1
slider	15
signature.tools.lib.v2.1.2	0
SnowballC	4
solrium	0
SomaDataIO	3
spatstat.random	37
statnet.common	2
spls	0
stabledist	5
statsExpressions	3
survey	5
taxize	2
stinepack	3
tergm	0
tiff	3
tidytext	4
tm	5
tmvtnorm	1
TraMineR	0
trimcluster	0
tuneR	0
urca	7
VennDiagram	1
tweedie	0
tzdb	29
VIBER	0
vroom	74
warp	14
WikidataR	0
WikidataQueryServiceR	0
workflowsets	12
weights	3
WRS2	2
xlsx	1
abc	0
ADGofTest	0
ASCAT	1
asnipe	0
aod	2
AUC	1
arm	4
bindr	1
bigstatsr	1
bold	1
bio3d	3
BMix	1
bootstrap	0
BSgenome.Hsapiens.1000genomes.hs37d5	0
chron	2
cghFLasso	0
circular	1
clValid	1
bioconductor-geomxtools	0
zoo	27
officer	24
rcdklibs	10
crayon	184
crosstalk	68
crisprViz	120
mnormt	12
MatrixModels	40
tidyverse	18
gemma.R	99
lazyeval	2
partykit	3
DescTools	7
exactRankTests	1
TENxIO	93
gdata	40
BiocFHIR	83
DNAfusion	86
ccImpute	87
maptools	16
qtl2	1
qtl	3
MetaPhOR	101
mouse4302.db	0
Formula	9
sandwich	13
rsvg	2
RIdeogram	0
qpcR	0
ghql	0
EMMREML	1
aqp	1
asremlPlus	0
jquerylib	1
poppr	1
clustermq	2
systemfonts	259
class	30
cellnoptr	1
bsplus	1
inline	2
earth	2
epitools	0
mda	1
mixtools	1
colourpicker	4
lpSolve	7
deldir	39
usethis	175
whisker	18
threejs	1
spData	8
seqminer	10
KernSmooth	75
AER	1
pbkrtest	48
tarchetypes	5
safetyexploreR	0
cmdstanr	1
targets	8
cobs	1
CovSel	0
cubature	1
dfidx	0
dr	0
dndscv	0
distr	1
DRR	1
dtangle	0
doMC	2
doSNOW	1
DPClust	0
feather	0
extrafont	1
ffbase	0
ff	3
fftw	0
GeneNet	0
ggm	1
goftest	1
hdf5r	12
gsalib	0
gsw	0
hdm	0
httpgd	2
idr	0
ISOcodes	1
kohonen	1
lavaan	13
lazy	0
liquidSVM	0
logcondens	0
lhs	15
longitudinal	0
MatchIt	4
metaplus	0
mlegp	0
ordinal	8
peperr	0
PheWAS	0
pdp	1
org.Ss.eg.db	1
dm	1
cem	1
DBItest	0
datamods	16
gghighlight	1
latex2exp	1
broom.helpers	18
learnr	3
n1qn1	0
nhanesA	0
matrixcalc	1
ggtext	3
protolite	1
mets	1
gtsummary	4
polyclip	64
parameters	13
plumber	19
performance	12
RSEIS	9
vegawidget	0
systemfit	0
seurat	1
progress	81
irr	0
tfrmt	1
tensorflow	10
MsQuality	94
DMwR	0
getSVCNVperGene0.94	0
gUtils	1
lle	0
mutSigExtractor	0
ssh.utils	0
TwoSampleMR	1
org.Dm.eg.db	0
org.At.tair.db	1
biostatUtil	0
PerformanceAnalytics	1
Rd2roxygen	0
MCPcounter	1
babelmixr2	1
assertr	1
AsioHeaders	4
badger	1
bbr	1
ggeffects	3
nlmixr2	1
pmforest	1
shinyMobile	1
RcppGSL	2
rxode2random	1
rxode2ll	1
xaringan	1
reactable	1
yaImpute	1
rxode2parse	1
shinybusy	13
pkgdown	154
foghorn	0
sensobol	1
mapproj	2
deseq2	2
scidb	0
ascii	1
binr	0
clinPK	0
flexdashboard	1
downlit	118
Epi	3
ggdist	6
lambdr	0
lotri	0
metafor	6
plm	0
scico	0
RMariaDB	19
spacetime	2
lixoftConnectors.1	0
scatterpie	43
blockcluster	0
OncoBayes2	0
sjstats	1
sc3	0
crisprScore	167
COTAN	114
RCX	95
MetaboAnnotation	271
updateObject	78
BioCGenerics	0
CBEA	85
biodbMirbase	21
biodbNcbi	84
biodbExpasy	57
protGear	92
GenomicInteractionNodes	86
RAREsim	75
RolDE	90
borealis	94
cogeqc	99
omicsViewer	84
rifi	80
sSNAPPY	180
standR	165
SpotClean	124
spaSim	89
ATACCoGAPS	52
factR	88
XVectorb	0
org.Mm.eg.db	13
gmp	16
caret	33
gert	118
farver	170
mutoss	9
SeuratObject	35
ALL	11
aws.s3	6
ash	6
fds	6
IlluminaHumanMethylation450kanno.ilmn12.hg19	7
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
readxl	36
tinytex	353
posterior	12
httr	70
TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	9
aroma.core	9
RcppHNSW	21
RcppZiggurat	6
rsvd	7
GWASExactHW	7
reticulate	82
phyclust	1
DBI	338
generics	12
shinyFiles	11
filelock	48
EnsDb.Hsapiens.v75	6
TSP	14
egg	6
NMF	15
patchwork	77
callr	264
dtplyr	19
cluster	82
broom	114
dplyr	97
fontawesome	114
shiny	274
rvest	174
paws.compute	97
sass	280
vctrs	125
ggplot2	307
Rcpp	347
commonmark	242
renv	115
segmented	31
modelr	21
optparse	48
pander	2
party	89
paws	15
pryr	10
pscl	2
bigparallelr	0
brglm	0
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GeoMxWorkflows	1
waved	1
agridat	1
sdtmchecks	0
FlowSorted.Blood.450k	0
breakpointRdata	0
sceptre	0
geojsonlint	0
SpatialEpi	0
SeuratWrapper	0
QCvis	1
HaploBlocker	1
GOdb	1
HSAUR	1
ifultools	1
randomcolor	1
zli	1
iRanges	1
latentnet	1
lpridge	1
pedigreemm	1
tibbke	1
pipebind	1
ITKR	1
Unicode	1
bmspal	1
properties	1
tern.rbmi	1
drugfindR	1
MBCluster.Seq	1
xCell	1
pivotalReporters	1
ComBatFamQC	1
rmcfs	1
qiimer	1
timevis	1
RNifti	1
unikn	1
usebox	1
nlstools	1
EMAtools	1
datacutr	1
lbe	1
preColours	1
ggsankey	0
jskm	0
msatR	0
renderthis	1
survMS	0
InformationValue	0
MKmisc	0
themeSanofi	1
digitalDLSorteR	1
tidyproteomics	1
sradb	1
fineimp	1
GenOrd	1
PCAmixdata	1
ModelR	1
chromoMap	1
ivs	1
QNB	1
PropCIs	1
MAtrixModels	1
initiate.archr	1
matrixStatst	1
pivotalAbundances	1
lockfit	1
monolix2rx	1
jJava	1
PCDSpline	1
CePa	1
Polytect	12
ReducedExperiment	12
geyser	11
AlphaSimR	1
dgof	1
h5mread	47
QGDA	1
leafgl	1
dipsaus	1
reactable.extras	1
DAISIEprep	1
dandelionR	3
SpectraVis	0
chevreulPlot	0
standby	1
gggenomes	0
chevreulShiny	0
MeSH.db	0
SFSI	1
qctools	1
conflrhlx	1
DoubletDecon	1
ympes	1
bWGR	1
scarHRD	1
teal.builder.checks	0
DECoN	0
MATRIX	1
ProfilerAPI2	1
bonemarrowref.SeuratData	1
uwo	1
matrixGenerics	1
EmbedSOM	1
rtables.officer	0
blocksdesign	1
turner	1
paran	1
PhViD	1
stabilityTools	1
beachmat.tiledb	14
hypothesis	1
hta.ard	1
bonsai	1
ELViS	2
reformulas	1
jazzPanda	0
poem	0
sparsevctrs	0
SSOAP	1
Runiversal	1
ggsurfvit	1
BARTools	1
popEpi	1
iclusterplus	1
BioInstaller	1
citril.metadata	0
cicerone	1
mmrbws	1
RTriangle	1
revealxpress	1
colorSpec	1
tidygate	1
cclust	1
DGCA	0
SpiecEasi	0
dropletutils	1
obliqueRF	1
Seraut	1
org.Ssalar.eg.db	1
gneDB	1
verification	0
gsEasy	0
eigenMS	0
CENTIPEDE	0
RaMS	1
eatRep	1
statgenSTA	1
TrIdent	11
PopVar	1
SpATS	1
mist	3
smoppix	9
maaslin3	9
SpatialPack	1
random.cdisc.data	1
xCell2	10
autoslideR	1
FCPS	1
protoclust	1
SpatialExperimentIO	11
biocmake	7
PICB	7
nc	1
rempsyc	1
MSstatsBioNet	3
CARDspa	1
MCODE	1
arkdb	0
pmqtsreport	0
TropFishR	0
terapadog	0
TENET	0
DNAcycP2	0
mpralm	0
NNsig	1
sdw	1
SurvMetrics	1
openalexR	1
SRAdbV2	1
BioMarks.ProteomeR	1
seqtime	0
tracklayer	0
shinydashboarq	0
ctv	1
CETS	1
PSweight	1
CMScaller	0
clixyzabc	1
desplot	1
NetBenchmark	0
BayesMendel	0
gmqn	0
phargorn	0
DWSClient	1
rtfmt	1
BulkSignalR	5
depmapSLr	1
cpp11bigwig	1
minga	1
pRRophetic	1
scQTLtools	6
MetaboDynamics	6
DropletQC	1
chevreulProcess	2
HiCParser	3
bedbaser	3
XeniumIO	4
emoji	1
switchstep	1
s3	1
duckplyr	1
pneumotypr	1
Rigraphlib	0
R6P	0
OSTA.data	0
CPSM	0
SVP	0
alabaster.sfe	0
FDRreg	0
TreeTools	1
argusDS.studio.visualisations	1
ChronosDSTools	1
bibliometrix	1
quanteda.textstats	1
CodeDepends	1
qs2	1
EnvDataQC	0
magittr	0
rmail	0
BinaryTrial	0
ESTIMATE	0
MATRIXS	1
vtable	1
koalaNetworkDriveData	1
Andromeda	1
fastmat	1
COCONUT	1
ccclust	1
AAVess	0
irGSEA	0
PopGenome	0
plotthis	0
ParallelLogger	1
seraut	1
ondisc	1
VISION	1
arpr	0
legocolors	0
MetaQC	0