Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.49.1
Date: 2025-07-24
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katja.hebestreit@gmail.com>
Depends: R (>= 3.5.0), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges, Seqinfo,
        GenomicRanges, SummarizedExperiment, rtracklayer, parallel,
        betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
git_url: https://git.bioconductor.org/packages/BiSeq
git_branch: devel
git_last_commit: 3b6b7d2
git_last_commit_date: 2025-07-24
Repository: Bioconductor 3.22
Date/Publication: 2025-07-25
NeedsCompilation: no
Packaged: 2025-07-25 21:46:35 UTC; biocbuild
Built: R 4.5.1; ; 2025-07-26 12:41:32 UTC; windows
