add_legend              add_legend
alluvial_enriched       alluvial_enriched
alluvial_enrichment_tests
                        alluvial_enrichment_tests
calculate_centrality_scores
                        calculate_centrality_scores
default_size            default_size
draw_alluvial_plot      draw_alluvial_plot
example_clusters        Randomly generated example datasets for XINA
                        users. A dataset containing the XINA clustering
                        results.
extract_data_column     extract_data_column
find_similar_clusters   find_similar_clusters
generate_count_table    generate_count_table
generate_superset       generate_superset
get_color_for_nodes     get_color_for_nodes
get_colors              get_colors
get_comigrations_by_name
                        get_comigrations_by_name
get_condition_biased_comigrations
                        get_condition_biased_comigrations
get_layout              get_layout
get_mTOR_proteins       get_mTOR_proteins
get_random_data         get_random_data
get_stats               get_stats
get_theme_blank         get_theme_blank
get_unknown_ppi_nodes   get_unknown_ppi_nodes
gn                      A character vector containing 19,396 human
                        genes This is for the randome data generation
                        of XINA
gn_desc                 A character vector containing 19,396 human gene
                        descriptions This is for the randome data
                        generation of XINA
hprd_ppi                Protein-protein interaction resource downloaded
                        from HPRD DB A data frame containing HRPD
                        protein-protein interaction data
length2                 length2
load_previous_results   load_previous_results
make_random_xina_data   make_random_xina_data
mutate_colors           mutate_colors
organize_clusters       organize_clusters
plot_NA                 plot_NA
plot_clusters           plot_clusters
plot_clusters_all       plot_clusters_all
plot_condition_compositions
                        plot_condition_compositions
plot_enrichment_results
                        plot_enrichment_results
rank_centrality         rank_centrality
string_example          Protein-protein interaction resource downloaded
                        from STRING DB for XINA's example dataset A
                        data frame containing protein-protein
                        interactions
xina_analysis           xina_analysis
xina_clustering         xina_clustering
xina_enrichment         xina_enrichment
xina_plot_all           xina_plot_all
xina_plot_bycluster     xina_plot_bycluster
xina_plot_single        xina_plot_single
xina_result_example     Previously processed xina analysis using XINA's
                        random example data A list containing
                        'xina_analysis' results
