SampleSet-class         S4 class object SampleSet
agreement               Function to measure intra-replicate agreement
                        for methylation data.
fromGenStudFiles        Creates a S4 object of class 'SampleSet' from
                        GenomeStudio files
fromRGChannelSet        Creates an object of class SampleSet from a
                        RGChannelSet minfi
funtooNorm              The funtooNorm normalization function
funtooNorm-package      funtooNorm
getGRanges              Build GRange object of methylation probes
getNormBeta             Computes Beta values from normalized signals
getNormM                Computes M values,log2(Meth/Unmeth), from
                        normalized signals
getRawBeta              Computes Beta value from raw signals
getSnpM                 Computes M values after normalization of SNP
                        data.
plotValidationGraph     plot of Validation Graph for determing number
                        of components
show,SampleSet-method   Show Object SampleSet
