Package: proBAMr
Type: Package
Title: Generating SAM file for PSMs in shotgun proteomics data
Version: 1.43.1
Date: 2025-04-30
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang@vanderbilt.edu>
Description: Mapping PSMs back to genome. The package builds SAM file
        from shotgun proteomics data The package also provides function
        to prepare annotation from GTF file.
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi
Imports: GenomicRanges, Biostrings, GenomicFeatures, txdbmaker,
        rtracklayer
Suggests: GenomeInfoDbData, RUnit, BiocGenerics
biocViews: ImmunoOncology, Proteomics, MassSpectrometry, Software,
        Visualization
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/proBAMr
git_branch: devel
git_last_commit: c2450bb
git_last_commit_date: 2025-04-30
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
Packaged: 2025-06-05 01:18:58 UTC; biocbuild
Built: R 4.5.0; ; 2025-06-05 13:41:20 UTC; windows
